Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq17702 125 6e-24 seq2991 91.5 1e-13 >seq17702 Length=19512 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | ||| || | |||| ||| | || || || || |||||||||||||| Sbjct 10325 TGCCACCCCTCAATCGAAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAG 10266 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| |||| || ||||| || || ||| | || ||||||||||| || || | Sbjct 10265 CAAGGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCAGGAG 10206 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || ||||| |||||| ||||| | | || | |||||||| || | Sbjct 10205 GTATCCCTTCCTTATCTTGGATCTTTGCTTTCACGTTGTCAATAGTGTCTGAACTCTCGA 10146 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || |||||||| | ||||| || ||||||||||| ||||||||||| Sbjct 10145 CCTCCAGAGTTATGGTCTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 10097 >seq2991 Length=32481 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || | |||||| | || | ||| | || || || || || ||||| || ||| Sbjct 26344 GCCACCTCTCAACCGAAGAACGAGATGCAGTGTTGACTCCTTCTGGATATTATAATCGGC 26285 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | | || | || || ||||| ||||||||| | ||||||||||| || ||||| || Sbjct 26284 GAGGGTACGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 26225 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| |||| | || | || || | || || || Sbjct 26224 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGGACTCTAC 26165 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| ||||| | || ||||||| || || || ||||| ||||| Sbjct 26164 CTCTAGGGTTATGGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCAT 26117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424842402233568