Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq4995 843 0.0 seq2936 118 4e-22 seq9577 89.7 2e-13 >seq4995 Length=1147 Score = 843 bits (934), Expect = 0.0 Identities = 494/512 (96%), Gaps = 0/512 (0%) Strand=Plus/Minus Query 3687 TTGCTTTCTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 3746 |||| | ||||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 512 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 453 Query 3747 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 3806 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 452 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 393 Query 3807 GGCCAGGCGTCTTCGCTCATCTATGGGATCGCCACACTCGCAACAATGAGTGGCAGATAT 3866 | ||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| Sbjct 392 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 333 Query 3867 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCAATTTC 3926 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 332 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 273 Query 3927 TGATGCTGAATCAATGAGGTCTGCCATCTTTCATTAATCCCTGAATTGTTGGTTAATACG 3986 ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 272 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAACTGTTGGTTAATACG 213 Query 3987 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 4046 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 212 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 153 Query 4047 CATGTTCACCGTTCCTTAAAGACGCCGTTTAACATGCCGATCGCCAGACTTAAATGAGTC 4106 |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 152 CATGTTCATCGTTCCTTAAAGACGCCGTTTAACATGCCGATTGCCAGGCTTAAATGAGTC 93 Query 4107 GGTGTGAATCCCATTAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 4166 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 92 GGTGTGAATCCCATCAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 33 Query 4167 TCATCGACGTTTTTATCCGGAAACTGCTGTCT 4198 |||||||||||||||||||||||||||||||| Sbjct 32 TCATCGACGTTTTTATCCGGAAACTGCTGTCT 1 Score = 158 bits (174), Expect = 4e-34 Identities = 105/117 (90%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 3379 TGCTGCTCCCAGCTCAACTCTCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 3438 ||||| | | |||||||| | ||| ||||| || || |||||||| |||||||||||||| Sbjct 688 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 629 Query 3439 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 3495 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 628 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 572 >seq2936 Length=29339 Score = 118 bits (130), Expect = 4e-22 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 22553 TCATTGCCATACGGAATTCCGGATGAGCATTCATCAGGCGGGCAAGAATGTGAATAAAGG 22612 ||||| ||| | |||| ||||||| ||||||||||||| ||||||| | ||| |||| Sbjct 26258 TCATTTGCATTTGAAATTAGGGATGAGTATTCATCAGGCGGTCAAGAATATAAATTAAGG 26317 Query 22613 CCGGATAAAACTTGTGCTTATTTTTCTTTACGGTCTTTAAAAAGGCCGTAATATCCAGCT 22672 || |||||| || |||||| | ||||||||| ||| ||||||||||| ||||| |||| Sbjct 26318 CCCAATAAAAATTCTGCTTAGTCTTCTTTACGATCTGTAAAAAGGCCGCAATATGCAGCC 26377 Query 22673 GAACGGTCTGGTTATAGGTACATTGAGCAACTG 22705 | ||| | |||||| || | ||||||| Sbjct 26378 CACGGGTGGGCGGATAGGTTCACGGGGCAACTG 26410 >seq9577 Length=1753 Score = 89.7 bits (98), Expect = 2e-13 Identities = 62/69 (90%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 22831 CCCGGTAGTGATCTTATTTCATTATGGTGAAAGTTGGAACCTCTT-ACGTGCCGATCAAC 22889 |||||||||||||||||| || ||||||||||||||||||||| |||| ||||||||| Sbjct 1684 CCCGGTAGTGATCTTATTCCAACTTGGTGAAAGTTGGAACCTCTTAACGTTCCGATCAAC 1743 Query 22890 GTCTCATTT 22898 |||||| || Sbjct 1744 GTCTCAGTT 1752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184405891830552