Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3345 109 7e-19 seq3444 102 1e-16 seq3490 93.3 5e-14 >seq3345 Length=549657 Score = 109 bits (120), Expect = 7e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || || || || ||||| ||||| || || || |||||| ||||| ||||| ||||| Sbjct 163839 TGAAGCCCTTCGTCTCGTGAAATGAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACCG 163898 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 ||||| |||| ||| |||| |||||||| || || ||||||||||| || || ||||| Sbjct 163899 CGCTTTTTCAGCCAGAAAATCGCGCAGAAGGAACCCGAGAAGAAGATTCCTTCGACACAA 163958 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 || || || | || || ||||| |||| Sbjct 163959 GCGAAGGCCACGAGACGCTCGGCAAAGG 163986 >seq3444 Length=1312069 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || |||||||| ||||||||||| ||||| || | || ||| ||||| | ||| Sbjct 1026607 TGAGGCCTTGGTGTGCCAGCATTGAACAGGGTAGGAGAAGCATGAGTGAACCATCGTTGA 1026666 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | | ||| || | | ||||| ||||| || | | ||| || || | ||| Sbjct 1026667 GACATCATATGGTACGTTTTAATAACAGATTCAATATCATTCTTGTGAATTCCAACAGCG 1026726 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119 || | ||| | ||||| |||||| ||| || | | || | || || || | || || Sbjct 1026727 ACTCTCATCAGCATGTGCTGTGGCCTTT-CAACAACCTTCCCTTGAACCTTTAAGAGGTA 1026785 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | | ||||||||||||||| ||||| ||| || | ||| | ||||| Sbjct 1026786 GGACCTCTCAAGGGTTTTGAATCCAAAATAATCATAGTCAAAATCCCG 1026833 >seq3490 Length=2069338 Score = 93.3 bits (102), Expect = 5e-14 Identities = 188/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || ||||||||||| || | | |||||||| || || |||||||||||||| || | Sbjct 1569186 AATCCATCCATCTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTCCCT--C 1569243 Query 11600 ATAC--CACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | | |||||| | | ||| | ||||| ||||||||||||||||| || ||||| | Sbjct 1569244 CTCCGAGACCAGCTCCTCTCTGCCTTCCCACTGCATCAATCTCATCAATAAACACAATGC 1569303 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 | ||| ||| ||| | || || | ||| | || || ||||| || || | Sbjct 1569304 AGGGTGCCTTTGATTTGGCTTTCTCGAACAAATCTCTCACTCTGGAAGCACCAACTCCCA 1569363 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 |||||| |||||| || | || |||| || || ||| || || | ||| || | Sbjct 1569364 CAAACAACTCCACGAACTCTGATGCAGCACAAGAGAAGAAGGGCACCCCAGCTTCTCCAG 1569423 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | | |||| || | | ||||| || |||||||| Sbjct 1569424 CAACTGCTCTAGCTAATAATGTCTTACCAGTACCTGG 1569460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627892545494400