Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3345 132 6e-26 seq3490 86.0 8e-12 >seq3345 Length=549657 Score = 132 bits (146), Expect = 6e-26 Identities = 118/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 || || || ||||| || || ||||| || || |||||| ||||| ||||| ||||| Sbjct 163839 TGAAGCCCTTCGTCTCGTGAAATGAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACCG 163898 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 ||||| |||| |||||||||||| || || || || ||||||||||| || || ||||| Sbjct 163899 CGCTTTTTCAGCCAGAAAATCGCGCAGAAGGAACCCGAGAAGAAGATTCCTTCGACACAA 163958 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGG 130175 ||||| || | ||||||||| ||||||| Sbjct 163959 GCGAAGGCCACGAGACGCTCGGCAAAGG 163986 >seq3490 Length=2069338 Score = 86.0 bits (94), Expect = 8e-12 Identities = 187/278 (67%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 || |||||||||||||||||||| ||||| || || || || | ||||||||| | | Sbjct 1569186 AATCCATCCATCTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTCCC--TC 1569243 Query 14213 ATAC--CACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 | | ||| || | | ||| | || || || ||||| ||||| || || || || | Sbjct 1569244 CTCCGAGACCAGCTCCTCTCTGCCTTCCCACTGCATCAATCTCATCAATAAACACAATGC 1569303 Query 14271 ATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 | ||| ||| ||| || || | ||||| |||||| ||||| || |||| Sbjct 1569304 AGGGTGCCTTTGATTTGGCTTTCTCGAACAAATCTCTCACTCTGGAAGCACCAACTCCCA 1569363 Query 14331 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCG 14390 |||||| |||||| || | | || | ||| || |||||| || || ||| || | Sbjct 1569364 CAAACAACTCCACGAACTCTGATGCAGCACAAGAGAAGAAGGGCACCCCAGCTTCTCCAG 1569423 Query 14391 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 | | |||| || | | ||||| || || |||||| Sbjct 1569424 CAACTGCTCTAGCTAATAATGTCTTACCAGTACCTGGT 1569461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618297876463840