Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3345 159 4e-34 seq3490 105 8e-18 seq3444 105 8e-18 >seq3345 Length=549657 Score = 159 bits (176), Expect = 4e-34 Identities = 377/558 (68%), Gaps = 16/558 (3%) Strand=Plus/Minus Query 94394 AGTATCCACACCTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAATT--GGACTGCTGA 94451 |||||||| | |||||||| | || |||||||| | | || || |||| || || Sbjct 164388 AGTATCCAGAGATCTGGGAAATGTACAAGAAGGCGGAG--GCGTCGTTCTGGACGGCCGA 164331 Query 94452 AGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAATGAAAATGAAAA 94508 ||||| || ||||| ||||| | ||| ||| ||| | |||| || | ||| Sbjct 164330 GGAGGTTGACCTCTCCCAGGATATCCGCGACTGGGAGAATACCTTAAACGACGACGAACG 164271 Query 94509 GAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAA 94568 | ||||| | || |||| ||||| || || | |||||||||||||| ||||||| Sbjct 164270 CCACTTCATCACTCACGTCCTTGCATTTTTCGCCGCCTCCGATGGAATTGTACTTGAGAA 164211 Query 94569 TATCAATAACAACTTTGCTGA-TGAGGTGCAATCCTCTGAAGCGAGATCCTTCTATGCGT 94627 | || | | ||| || ||| || || |||| || | ||||||||| || Sbjct 164210 TCTCGCTT-CTCGTTTCATGTCTGATGTTCAGGTGGCTGAGGCTCGTGCCTTCTATGGGT 164152 Query 94628 ATCAGTGTCATAAT-GAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTAT 94686 || || ||| || | | || |||| |||||| ||| | || | || Sbjct 164151 TCCAAA-TCGCAATCGAGAATATCCACTCCGAGATGTACAGTCTACTTCTCGAGACTTAC 164093 Query 94687 ATTAAGGA-TGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTAT 94745 |||||||| | | || |||||| | || |||||| ||| | | || | || || | Sbjct 164092 ATTAAGGACTCGAGC-GAGAAGGATCATCTCTTTCGCGCCGTTGAGACCATCCCTTGCGT 164034 Query 94746 TCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGA 94805 ||||| || ||||||||| | ||| | || ||| ||||||| || Sbjct 164033 GGCCAAGAAGGCCGATTGGGCTCTACGCTGGATCGACGGC---TCGGAGACCTTTGCCGA 163977 Query 94806 GCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTAT 94865 ||| ||| | || || || ||||| || || ||||||||||| |||||||||||||| || Sbjct 163976 GCGTCTCGTGGCCTTCGCTTGTGTCGAAGGAATCTTCTTCTCGGGTTCCTTCTGCGCGAT 163917 Query 94866 TTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTC 94925 || ||||| || ||||| ||||| ||||| |||||| ||||||||||||||| || || Sbjct 163916 TTTCTGGCTGAAAAAGCGCGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTCATTTC 163857 Query 94926 TCGTGACGAGGGACTCCA 94943 || ||||| || || || Sbjct 163856 ACGAGACGAAGGGCTTCA 163839 >seq3490 Length=2069338 Score = 105 bits (116), Expect = 8e-18 Identities = 193/279 (69%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || ||||||||||| ||||| || || |||||||| || || | ||||||||| || | Sbjct 1569186 AATCCATCCATCTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTCCCT--C 1569243 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | | ||||| | | ||| ||||||| ||||||||||||||||| || || |||| Sbjct 1569244 CTCCGAGACCAGCTCCTCTCTGCCTTCCCACTGCATCAATCTCATCAATAAACACAATGC 1569303 Query 9732 ATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 9789 | ||| ||| || || || | ||| | ||| || | || || || || Sbjct 1569304 AGGGTGCCTTTGATTTGGCTTTCTCGAACAAATCTC--TCACTCTGGAAGCACCAACTCC 1569361 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 ||||||| |||||| || | || || | ||| || |||||| || || ||| || Sbjct 1569362 CACAAACAACTCCACGAACTCTGATGCAGCACAAGAGAAGAAGGGCACCCCAGCTTCTCC 1569421 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 |||| |||| || | | |||||||| |||||||| Sbjct 1569422 AGCAACTGCTCTAGCTAATAATGTCTTACCAGTACCTGG 1569460 >seq3444 Length=1312069 Score = 105 bits (116), Expect = 8e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 104147 GACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCTCGATGG 104205 |||| || ||||||||| ||||||||||||||| | ||| || | || || || | || Sbjct 1026824 GACTATGATTATTTTGGATTCAAAACCCTTGAGAGGTCCTACCTCTTAAAGGTTCAAGGG 1026765 Query 104206 TGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGA 104265 ||| || ||| |||||| ||||| | ||| | || || | || ||||| | | Sbjct 1026764 AAGGTTGTTG-AAAGGCCACAGCACATGCTGATGAGAGTCGCTGTTGGAATTCACAAGAA 1026706 Query 104266 AGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGC 104325 || ||||| ||||| | | || ||| | | |||||| ||| | ||||| ||| || Sbjct 1026705 TGATATTGAATCTGTTATTAAAACGTACCATATGATGTCTCAACGATGGTTCACTCATGC 1026646 Query 104326 AACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 | || ||||| ||||||||||| |||||||| || ||| Sbjct 1026645 TTCTCCTACCCTGTTCAATGCTGGCACACCAAGGCCTCAA 1026606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583131286939360