Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3345 167 3e-36 >seq3345 Length=549657 Score = 167 bits (184), Expect = 3e-36 Identities = 389/571 (68%), Gaps = 23/571 (4%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | ||| || || | |||| |||| ||||| ||| | || |||||| Sbjct 164398 TTTCCGATTCAGTATCCAGAGATCTGGGAAATGTACAAGAAGGCGGAGGCGTCGTTCTGG 164339 Query 59622 TCCGTCGAGGAGATTGACCTCGCC--GGAGACCTGAAGGATTGGGACAAGCTC---AATT 59676 | | ||||||| |||||||| || ||| | | | || ||||| || | || Sbjct 164338 ACGGCCGAGGAGGTTGACCTCTCCCAGGATATCCGC--GACTGGGAGAATACCTTAAACG 164281 Query 59677 ACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTG 59736 ||||||| | || ||||||| ||||| || || ||||| || |||||||||| Sbjct 164280 ACGACGAACGCCACTTCATCACTCACGTCCTTGCATTTTTCGCCGCCTCCGATGGAATTG 164221 Query 59737 TGATGGAAAATATAGACATGAACTTTTCCAAG---GATGTCCAGATTGCCGAGGCCCGGT 59793 | | || ||| | | | | |||| | | ||||| ||| | || ||||| || Sbjct 164220 TACTTGAGAATCTCGC--TTCTCGTTTC-ATGTCTGATGTTCAGGTGGCTGAGGCTCGTG 164164 Query 59794 CGTTCTACGCGTATCAG-TCGTTCAA-CGAGTCTATCCACTCCGAGACGTACTCGCTCAT 59851 | ||||| | || || ||| ||| |||| |||||||||||||| |||| || | Sbjct 164163 CCTTCTATGGGTTCCAAATCG--CAATCGAGAATATCCACTCCGAGATGTACAGTCTACT 164106 Query 59852 GATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC 59911 |||| | | | ||||| || ||||||| | ||| || || ||| | ||||| Sbjct 164105 TCTCGAGACTTACATTAAGGACTCGAGCGAGAAGGATCATCTCTTTCGCGCCGTTGAGAC 164046 Query 59912 G-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAGC 59968 |||| || || | || || || ||||| | | ||||| || || |||| Sbjct 164045 CATCCCTTGC-GTGGCCAAGAAGGCCGATTGGGCTCTACGCTGGATCGACGGCTCGGAGA 163987 Query 59969 ATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTC 60028 | ||||| | |||||| | || || || || || ||||||||||||||||| || || Sbjct 163986 --CCTTTGCCGAGCGTCTCGTGGCCTTCGCTTGTGTCGAAGGAATCTTCTTCTCGGGTTC 163929 Query 60029 GTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAA 60088 ||||| || ||||||||||| |||||||| || || ||||| || || | |||||||| Sbjct 163928 CTTCTGCGCGATTTTCTGGCTGAAAAAGCGCGGTCTGATGCCTGGTCTCACCTTCTCCAA 163869 Query 60089 CGAGCTGATTTCCCGGGACGAGGGCCTCCAT 60119 |||||| ||||| || ||||| || || ||| Sbjct 163868 CGAGCTCATTTCACGAGACGAAGGGCTTCAT 163838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548403000068160