Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3345 98.7 1e-15 seq3514 91.5 2e-13 seq3510 82.4 8e-11 >seq3345 Length=549657 Score = 98.7 bits (108), Expect = 1e-15 Identities = 331/496 (67%), Gaps = 21/496 (4%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || |||||||| || || ||||| |||| ||| || || || ||||||||||| |||| Sbjct 163881 AGACCAGGCATCAGACCGCGCTTTTTCAGCCAGAAAATCGCGCAGAAGGAACCCGAGAAG 163940 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG-GAAGT 74923 ||||| ||||||||||| || ||||| || || || | || || ||| | || | || Sbjct 163941 AAGATTCCTTCGACACAAGCGAAGGCCACGAGACGCT-CGGCAAAGGT-CTCCGAGCCGT 163998 Query 74924 C-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGAC-CGC-AGGGACAGTATCGATCGC 74980 | ||||| ||||||| || || || || | | ||| ||||| || || | || Sbjct 163999 CGATCCAGCGTAGAGCCCAATCGGCCTT--CTTGGCCACGCAAGGGATGGTCTCAACGGC 164056 Query 74981 TTGGAAGAGGCTTGCCTTCTC-TTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGT 75039 | ||||| ||||||| ||| | ||||| | | | || | | || || Sbjct 164057 GCGAAAGAGATGATCCTTCTCGCTCGAG-TCCTTAATGTAAGTCTCGAGAAGTAGACTGT 164115 Query 75040 ACGTCTCCGAATGAATCGACTCG-TTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTC 75097 || |||| || || || |||| ||| ||| ||| || | ||||| | || ||||| Sbjct 164116 ACATCTCGGAGTGGATATTCTCGATTG--CGATTTGGAACCCATAGAAGGCACGAGCCTC 164173 Query 75098 TGCAATCTGTACATC--CTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCC 75155 || | ||| ||||| ||||| | ||| |||||| | || || || || Sbjct 164174 AGCCACCTGAACATCAGACATGAAACGAGAA--GCGAGATTCTCAAGTACAATTCCATCG 164231 Query 75156 GAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGA--GT- 75212 |||||||||||||| || || || |||| |||||||| || ||||| | | || Sbjct 164232 GAGGCGGCGAAAAATGCAAGGACGTGAGTGATGAAGTGGCGTTCGTCGTCGTTTAAGGTA 164291 Query 75213 TTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCA 75272 || ||||| || | ||| | | |||| ||||||| |||||||||| | | Sbjct 164292 TTCTCCCAGTCGCGGATATCCTGGGAGAGGTCAACCTCCTCGGCCGTCCAGAACGACGCC 164351 Query 75273 ATCGCCTTTTTGTACA 75288 |||||| ||||||| Sbjct 164352 TCCGCCTTCTTGTACA 164367 >seq3514 Length=4646585 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 80161 TGCTCCCGGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCATC 80220 ||||||||| |||| | |||||| |||| || ||| |||||||||||| ||||||||| | Sbjct 4507649 TGCTCCCGGCGAGGCTCGAACTCGCGACCTTCGGCTCATAAGACCAACGCTCTAACCAAC 4507590 Query 80221 TGAGTTACGAGAGCCTGGTTGA 80242 |||| |||| ||| |||||||| Sbjct 4507589 TGAGCTACGGGAG-CTGGTTGA 4507569 >seq3510 Length=3337861 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCT-CCCGCTTACTAAACGGGTGCTCTA--CCA 79681 |||||||| |||| | || |||| |||| |||||||||||||||||||||||| ||| Sbjct 4628 TGCTTTCGTTGAGAGTCGAACTCAAGACCTTCCCGCTTACTAAACGGGTGCTCTAACCCA 4569 Query 79682 ATTGAGCTACGAAAGC 79697 | |||||||||||||| Sbjct 4568 ACTGAGCTACGAAAGC 4553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547094490687200