Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3419 131 1e-25 seq17702 114 8e-21 seq3318 98.7 6e-16 seq2991 89.7 3e-13 >seq3419 Length=773737 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || |||||||| | |||| || || ||| |||||| ||||| || ||||||| | Sbjct 377559 CCACCCCTAAGACGAAGAACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCTGCA 377618 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||| ||||| || |||||||| || | || || || || || Sbjct 377619 AGAGTGCGACCATCTTCAAGCTGTTTGCCAGCAAATATCAACCTTTGCTGATCTGGTGGA 377678 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||||| | ||| || | ||||||||| || || || Sbjct 377679 ATACCTTCCTTGTCCTGAATCTTT-GCTTTGACATTGTCAATTGTGTCAGAACTTTCAAC 377737 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || || ||||||||||| | |||||||| |||||||||||| Sbjct 377738 TTCCAATGTGATAGTTTTACCGGTCAGGGTTTTCACGAAAATCTGCATG 377786 Score = 125 bits (138), Expect = 4e-24 Identities = 167/228 (73%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | |||||| || ||||| |||||| |||||||| || || | | Sbjct 377332 CCACCACGAAGGCGAAGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCA 377391 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | | ||||| || ||||| || |||||||| || | ||| || || || || Sbjct 377392 AG-GTCCTGCCATCTTCTAGCTGTTTGCCCGCAAATATCAACCTCTGCTGATCAGGGGGG 377450 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||||| | |||||| || ||||||||| |||||||| Sbjct 377451 ATTCCCTCCTTGTCCTGAATCTTG-GCTTTAACATTATCAATTGTGTCAGAACTCTCCAC 377509 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| || || | ||||||||||| || ||||| Sbjct 377510 TTCCAGTGTGATGGTTTTCCCAGTGAGGGTTTTCACAAAGATTTGCAT 377557 Score = 118 bits (130), Expect = 7e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | |||||| || || || ||| || || ||||| || || | ||| |||| Sbjct 381536 AGTCGAAGCACCAAGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCAGCAAGAGTTCTT 381595 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| ||||| ||||||||||| | ||||||||||| || | ||||||| Sbjct 381596 CCATCTTCAAGTTGCTTACCAGCAAATATTAACCTTTGTTGGTCCGGTGGGATTCCCTCC 381655 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | ||||| || ||| || || || || | ||||| || Sbjct 381656 TTGTCT-TGAATTTTGGCCTTAACATTATCAATGGTATCAGAACTTTCAAATTCCAAAGT 381714 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || ||||||||||| ||||| Sbjct 381715 AATGGTCTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 381753 Score = 109 bits (120), Expect = 3e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | || ||||| |||||||||||||| || |||| Sbjct 381071 CCACCACGAAGACGAAGGACAAGGTGCAGAGTTGATTCCTTTTGAATGTTGTAGTCTGCC 381130 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || | | | || || || || || || ||||| || || | ||| ||||| || || Sbjct 381131 AAGGTCCTCCCATCCTCTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGTGGG 381190 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||||| ||| ||||| || ||| || ||| ||||| || ||||| Sbjct 381191 ATTCCCTCCTTGTCTTGGAT-TTTTGCCTTTACGTTATCAATGGTGTCAGAACTTTCCAC 381249 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || || || || || || || || || ||||||||||||||| Sbjct 381250 CTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATG 381298 Score = 109 bits (120), Expect = 3e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | |||||| ||||| || |||||||| || ||||| |||| Sbjct 381298 GCCACCACGAAGACGGAGCACCAAGTGGAGTGTAGATTCCTTTTGGATATTATAGTCTGC 381357 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| |||| | || ||||| || ||||| |||||||| | | |||||||| || || Sbjct 381358 AAGGGTTCTTCCATCCTCAAGCTGCTTACCAGCAAATATGAGCCTTTGTTGGTCTGGTGG 381417 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||| ||||| || || | ||| || || ||||| | Sbjct 381418 GATACCCTCCTTGTCCTGGAT-TTTTGCCTTGACATTGTCAATAGTATCAGAACTCTCAA 381476 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || ||||| || || | || || || ||||| ||||| Sbjct 381477 CTTCCAAAGTGATGGTTTTCCCAGTAAGAGTCTTAACGAAAATTTGCAT 381525 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||||||||||||| |||||| |||||||| ||||| | | || | | | || || Sbjct 376893 CACCAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCTAAGGTCCTCCCATCCTC 376952 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 | || ||||| ||||| || | | ||||||||| || || | || ||||||||| Sbjct 376953 CAACTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGTGGAATCCCTTCCTTGTCTTG 377012 Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 ||| ||| || || || | ||| || ||| || || ||||||| ||| || || | Sbjct 377013 GAT-TTTAGTCTTGACATTGTCAATGGTATCTGAACTTTCAACTTCCAAGGTGATTGTCT 377071 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | || ||||||||||||||||| Sbjct 377072 TCCCAGTAAGAGTCTTCACAAAAATCTGCAT 377102 Score = 100 bits (110), Expect = 2e-16 Identities = 166/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||| | ||||| ||||| || ||||||||| ||||| || || | Sbjct 377786 GCCACCCCTCAGACGGAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCAGC 377845 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || ||||| ||||| || ||||| || || | ||| ||||| || || Sbjct 377846 CAGAGTGCGGCCATCCTCAAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGAGG 377905 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | ||||||||| || ||||| | || || || ||| ||||| |||||| | Sbjct 377906 GATTCCCTCCTTATCCTGAATCTTA-GCCTTGACATTATCAATAGTGTCAGAGCTCTCAA 377964 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA--TGTTGA 34711 | || | ||| | || || || || | ||||||||||| || |||| |||||| Sbjct 377965 CCTCGAGGGTGACGGTCTTGCCAGTAAGTGTTTTCACAAAGATTTGCATCTGTTGA 378020 >seq17702 Length=19512 Score = 114 bits (126), Expect = 8e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||| |||||||||| ||||| ||||| || || || | ||| || || |||| || Sbjct 10305 ACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGCAAGGGTGCGTCCGTCCTCC 10246 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || || || || || | |||||||||||| || || | || ||||| ||| | Sbjct 10245 AGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCAGGAGGTATCCCTTCCTTATCTTGG 10186 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| |||| ||| ||| | ||| |||||| ||||| || |||| ||||| || || Sbjct 10185 ATC-TTTGCTTTCACGTTGTCAATAGTGTCTGAACTCTCGACCTCCAGAGTTATGGTCTT 10127 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | |||||||| || || ||||| Sbjct 10126 GCCGGTGAGAGTTTTCACGAAGATTTGCAT 10097 Score = 98.7 bits (108), Expect = 6e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34477 TCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCT 34536 || || || | |||||| | |||| ||||| || ||| || |||||||| || || Sbjct 11466 TCACCCCCCCGAAGACGAAGAACCAGGTGGAGGGTCGACTCTTTCTGAATGTTGTAGTCA 11407 Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 | |||||||||| | ||||| | || || || ||||| || || || || ||||| || Sbjct 11406 GCAAGTGTTCGCCCATCTTCCAACTGCTTCCCTGCAAAGATCAACCGTTGCTGGTCTGGT 11347 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTC 34655 || | || ||||| || ||||| | || || | || ||||| |||||| Sbjct 11346 GGGATACCTTCCTTATCCTGAATCTTA-GCCTTCACATTGTCTATGGTGTCAGAGCTCTC 11288 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || | ||| || || || || || || || ||||||||||||||||| Sbjct 11287 CACCTCGAGGGTAATGGTCTTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 11237 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | ||| | || || ||| || || || ||||||||||| | Sbjct 11235 CCTCCGCGAAGGCGGAGCACGAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCCGCC 11176 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | | || || || || ||||| ||||| || ||||| |||||||| || || Sbjct 11175 AGGGTCCTGCCATCCTCCAGCTGCTTACCTGCAAAGATCAAACGTTGTTGGTCTGGTGGG 11116 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| || |||| || | || || | ||| || || |||||| || Sbjct 11115 ATCCCTTCCTTATCCTGGATC-TTCGCCTTCACATTGTCAATGGTATCAGAGCTCTCTAC 11057 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || || || || || |||| || |||||||||||||||||| Sbjct 11056 CTCCAGAGTGATGGTCTTTCCAGTTAGGGTCTTCACAAAAATCTGCATG 11008 >seq3318 Length=237370 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||| |||||| || |||||| ||||||||||| || | Sbjct 46155 CCACCACGAAGACGGAGAACCAGATGGAGGGTTGACTCCTTCTGAATGTTATAGTCGGCG 46096 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | |||| || || || || ||||| || || | | ||| ||||| || || Sbjct 46095 AGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 46036 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | ||||||||| |||||| || Sbjct 46035 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTGTCAATTGTGTCGCTGCTCTCTAC 45977 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| ||||| || || || | || || || || |||||||| Sbjct 45976 CTCGAGGGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCAT 45929 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||| |||||| || |||||| ||||||||||| || | Sbjct 46383 CCACCACGAAGACGGAGAACCAGATGGAGGGTCGACTCCTTCTGAATGTTATAGTCGGCG 46324 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | |||| ||||| || || ||||| || || | | ||| ||||| || || Sbjct 46323 AGGGTCCTGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 46264 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | ||| ||||| |||||| || Sbjct 46263 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCTAC 46205 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| ||||| || || || | || || || || |||||||| Sbjct 46204 CTCGAGGGTGATCGTCTTCCCTGTAAGGGTCTTGACGAAGATCTGCAT 46157 >seq2991 Length=32481 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| ||||| | || | || | ||| || || |||||| || || |||||||| | Sbjct 26345 CGCCACCTCTCAACCGAAGAACGAGATGCAGTGTTGACTCCTTCTGGATATTATAATCGG 26286 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || | || ||||| || |||||||| || || | |||||| |||||||| | Sbjct 26285 CGAGGGTACGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGG 26226 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||| || | || || | || || || | ||| Sbjct 26225 GAATGCCCTCCTTGTCCTGGATC-TTGGCCTTCACATTGTCGATGGTATCAGAGGACTCT 26167 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || | |||||| || ||||| || || || || || || |||||||| || Sbjct 26166 ACCTCTAGGGTTATGGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCATCTT 26114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314661461435012