Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq17702 125 6e-24 seq3419 122 8e-23 seq3318 104 2e-17 >seq17702 Length=19512 Score = 125 bits (138), Expect = 6e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| |||||||||||||| ||||||||| | || |||||||| || || || Sbjct 10324 CATGCAGATCTTTGTAAAAACTCTCACCGGCAAGACCATCACTCTTGAGGTTGAGAGCTC 10383 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | |||| | ||||| || ||||| |||||||||||||| || || || || Sbjct 10384 TGACACCGTTGATAACGTCAAGGCGAAGATTCAGGACAAAGAAGGCATCCCTCCTGACCA 10443 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||||||||| || | || || || ||| || | |||||||| Sbjct 10444 GCAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGTACCCTTGCTGATTACAA 10503 Query 27167 CATTCAAAAGGAGTCGACC 27185 ||| || || ||||| ||| Sbjct 10504 CATACAGAAAGAGTCCACC 10522 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||||||| | || |||||||| || || || Sbjct 10553 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTTGAGAGCTCT 10612 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||| |||||||||||||| || || || || Sbjct 10613 GACACCATTGATAACGTCAAGGCGAAGATTCAGGACAAAGAAGGCATCCCTCCTGACCAG 10672 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | |||| ||||||||| || | || || || ||| || | ||||||||| Sbjct 10673 CAGAGGCTTATATTCGCCGGCAAGCAGCTCGAGGATGGTCGCACCCTTGCTGATTACAAC 10732 Query 27168 ATTCAAAAGGAGTCGACC 27185 || || || ||||| ||| Sbjct 10733 ATACAGAAAGAGTCCACC 10750 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| |||||| | ||||| || || ||||| || Sbjct 11237 ATGCAGATTTTTGTGAAGACCTTGACAGGCAAGACCATTACCCTCGAGGTGGAGAGCTCT 11296 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || ||||| || || ||||| || ||||| || || Sbjct 11297 GACACCATAGACAATGTGAAGGCTAAGATTCAGGATAAGGAAGGTATCCCACCAGACCAG 11356 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | || || || || |||||||| | || || | || |||||| Sbjct 11357 CAACGGTTGATCTTTGCAGGGAAGCAGTTGGAAGATGGGCGAACACTTGCTGACTACAAC 11416 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || ||||||||| | || ||||| | ||| | ||||| || Sbjct 11417 ATTCAGAAAGAGTCGACCCTCCACCTGGTTCTTCGTCTTCGGGGGGG 11463 >seq3419 Length=773737 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || || ||| | || || | ||||| ||| || Sbjct 377102 ATGCAGATTTTTGTGAAGACTCTTACTGGGAAGACAATCACCTTGGAAGTTGAAAGTTCA 377043 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| ||||| |||||||| ||||| || ||||| || ||| Sbjct 377042 GATACCATTGACAATGTCAAGACTAAAATCCAAGACAAGGAAGGGATTCCACCAGACCAA 376983 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || ||||| || | |||| | | ||||||||| Sbjct 376982 CAGAGGCTGATTTTTGCTGGTAAGCAGTTGGAGGATGGGAGGACCTTAGCTGATTACAAC 376923 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || | |||||||| | || ||||| ||||| || Sbjct 376922 ATTCAGAAGGAGTCAACTCTCCATTTGGTGCTTCGATTGCGTGGTGGAAT 376873 Score = 105 bits (116), Expect = 6e-18 Identities = 162/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || || || || | || || || |||||||| || Sbjct 377557 ATGCAAATCTTTGTGAAAACCCTCACTGGGAAAACCATCACACTGGAAGTGGAGAGTTCT 377498 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || ||||| ||||| || || || || || ||||| Sbjct 377497 GACACAATTGATAATGTTAAAGCCAAGATTCAGGACAAGGAGGGAATCCCCCCTGATCAG 377438 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || |||| || |||||||| | ||||| | |||| || | || |||||| Sbjct 377437 CAGAGGTTGATATTTGCGGGCAAACAGCTAGAAGATGGCAGGACC-TTGCTGACTACAAC 377379 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || | || ||||| | || | || ||||| || Sbjct 377378 ATTCAGAAGGAGTCTACTCTTCACTTGGTGCTTCGCCTTCGTGGTGGTAT 377329 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||| |||| || ||| |||| ||| | || |||||| || Sbjct 381298 CATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAGGTGGAAAGTTC 381239 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || |||||| |||||||| || || || |||||||| || Sbjct 381238 TGACACCATTGATAACGTAAAGGCAAAAATCCAAGACAAGGAGGGAATCCCACCCGACCA 381179 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | || || || || | || || | |||| | | || ||||| Sbjct 381178 GCAGAGGTTGATCTTTGCTGGGAAGCAGCTAGAGGATGGGAGGACCTTGGCAGACTACAA 381119 Query 27167 CATTCAAAAGGAGTCGAC 27184 |||||||||||| || || Sbjct 381118 CATTCAAAAGGAATCAAC 381101 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| || || ||| | |||||| | ||| | ||| || Sbjct 381753 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAGACCATTACTTTGGAATTTGAAAGTTCT 381694 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || |||||||||||||| || || || ||||| || ||| Sbjct 381693 GATACCATTGATAATGTTAAGGCCAAAATTCAAGACAAGGAGGGAATCCCACCGGACCAA 381634 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||||| || || || ||| | ||||| | || || | || |||||| Sbjct 381633 CAAAGGTTAATATTTGCTGGTAAGCAACTTGAAGATGGAAGAACTCTTGCTGACTACAAC 381574 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| ||| |||| ||||| | || | || ||||| || Sbjct 381573 ATCCAGAAAGAGTCAACCCTACACTTGGTGCTTCGACTCCGTGGTGGTAT 381524 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || |||||||| || ||| |||| || | || || || || Sbjct 377330 ATGCAGATATTTGTTAAGACTCTGACAGGGAAGACTATAACCTTGGAGGTCGAGAGTTCT 377271 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || || ||||| || ||||| || ||||| ||||| Sbjct 377270 GATACAATTGACAATGTAAAAGCCAAGATCCAAGATAAGGAAGGAATCCCACCAGATCAG 377211 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || ||||| | ||||| || ||| || | || |||||| Sbjct 377210 CAGAGGCTTATCTTTGCAGGAAAACAGCTTGAAGATGGTCGTACCCTTGCAGACTACAAC 377151 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || |||||||| || ||| | || ||||| Sbjct 377150 ATCCAAAAGGAATCCACCCTCCACTTGGT 377122 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || ||||| || || | |||||||| || || || || Sbjct 376874 ATGCAGATATTTGTGAAGACGCTGACAGGAAAAACCATTACTCTCGAGGTTGAGAGTTCT 376815 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | |||||| || || ||||||||||| || || || || ||||| Sbjct 376814 GATACAATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATTCCTCCTGATCAG 376755 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || |||| || | ||| | | ||||||||| Sbjct 376754 CAGAGGTTGATCTTTGCAGGTAAGCAGCTGGAGGATGGACGTACCCTGGCAGATTACAAC 376695 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||| ||| | ||| | || | || | || ||||| Sbjct 376694 ATCCAGAAGGAGTCCACCCTGCATCTTGTCCTCCGACTTCGTGGTGG 376648 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || || |||||| | | || || || || || || Sbjct 378013 ATGCAAATCTTTGTGAAAACACTTACTGGCAAGACCGTCACCCTCGAGGTTGAGAGCTCT 377954 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||| || || || || || || || || || Sbjct 377953 GACACTATTGATAATGTCAAGGCTAAGATTCAGGATAAGGAGGGAATCCCTCCAGACCAG 377894 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || |||||||| | || || | || | | || |||||| Sbjct 377893 CAGAGATTGATTTTTGCTGGCAAACAGCTTGAGGATGGCCGCACTCTGGCTGACTACAAC 377834 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | || |||||| | ||| || |||||||||| Sbjct 377833 ATCCAAAAGGAGTCAACCCTCCACTTGGTTCTCCGTCTGAGGGGTGGCAT 377784 >seq3318 Length=237370 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || | || ||||| | Sbjct 45473 ATGCAGATCTTCGTCAAGACACTCACCGGCAAGACCATCACCTTGGAGGTGGAGAGCAGC 45532 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||||||||| || ||||| || || Sbjct 45533 GACACCATCGACAACGTTAAGGCTAAGATCCAGGACAAAGAAGGGATCCCACCGGACCAG 45592 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| ||||| | |||||| | ||| | ||||||||||| Sbjct 45593 CAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGTACCCTAGCCGATTACAAC 45652 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| ||||| | || | ||| | || | || ||||| || Sbjct 45653 ATCCAAAAGGAATCGACTCTCCACCTTGTTCTCCGCCTCCGTGGTGGGAT 45702 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | || || || || || || | Sbjct 46157 ATGCAGATCTTCGTCAAGACCCTTACAGGGAAGACGATCACCCTCGAGGTAGAGAGCAGC 46216 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || ||||| || ||||| || || || || Sbjct 46217 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 46276 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||| || || | || ||| | |||| | |||| || ||| Sbjct 46277 CAGAGGCTGATCTTCGCCGGAAAGCAGCTTGAGGACGGCAGGACCCTCGCCGACTATAAC 46336 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||||||| | ||| ||||| | ||| | || ||||| || Sbjct 46337 ATTCAGAAGGAGTCGACCCTCCATCTGGTTCTCCGTCTTCGTGGTGGGAT 46386 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | || || ||||| || || | Sbjct 45701 ATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACGATCACCCTTGAGGTTGAGGGCAGC 45760 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || || || || ||||| || || || || Sbjct 45761 GACACAATTGACAACGTTAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAG 45820 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||| || || | || ||| | |||| | | ||||||||| Sbjct 45821 CAGAGGCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGGACCTTGGCGGATTACAAC 45880 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| |||||| | || ||||| | ||| | || ||||| || Sbjct 45881 ATCCAGAAGGAATCGACCCTCCACTTGGTGCTCCGTCTCCGTGGTGGGAT 45930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434821826369280