Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_029120.1 Length=60875 Score E Sequences producing significant alignments: (Bits) Value seq4995 282 2e-71 >seq4995 Length=1147 Score = 282 bits (312), Expect = 2e-71 Identities = 180/196 (92%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 58287 TTTCCAGTTCTGCTATGCGCTTACTTCCATCCGCGATTACTCCCTCGTAATATTCACGCT 58346 ||||||||| || || |||||||| ||||||| ||| || || |||||||| ||||||| Sbjct 767 TTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAACACCTTCGTAATACTCACGCT 708 Query 58347 GCTCGTTGAGTTTTGATTTTGCTGCTTCAAGCTCAACGCGCAGCTTCCCTACCGTAAGCG 58406 |||||||||||||||||||||||| |||||||||||| ||||| |||||||| || |||| Sbjct 707 GCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCG 648 Query 58407 CAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 58466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 647 CAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 588 Query 58467 CCAGCAGTGCCAGCAC 58482 |||||||| ||||||| Sbjct 587 CCAGCAGTTCCAGCAC 572 Score = 149 bits (164), Expect = 2e-31 Identities = 177/237 (75%), Gaps = 11/237 (5%) Strand=Plus/Minus Query 58991 GCTCACTTCACACCTCTCTGTTTGTTGATAAGTTCAATATCCTGCTGGCAACTGGCGCAA 59050 ||||||||| |||||||||||| |||||||||| | ||||| ||||||||| || ||| Sbjct 469 GCTCACTTCGAACCTCTCTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAA 410 Query 59051 GTTCGGCATCCGCGAACAGCCTGGCGTCGCCGCTCATCTATCGGATCGCCACACTCGCAA 59110 || || || || |||| || |||||| || ||||||||||||||||||||||| ||| Sbjct 409 GTCCGACAACCCTGAACGACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAA 350 Query 59111 CAATGAGTAGCAGATGGGGCAT--TACTTTCGGATTTGTATTT---TTGCAGGGAGAGAT 59165 |||||||| |||||| || | | || || | |||| |||| | | | Sbjct 349 CAATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTG-----T 295 Query 59166 TGCGCTGCAATTCTTCGATTTCAGCGGCATTGTCGATGATATCTGCCAT-TTTCCTT 59221 ||||||| |||||||| ||||| | || || ||||| |||||||| |||| || Sbjct 294 TGCGCTGTAATTCTTCTATTTCTGATGCTGAATCAATGATGTCTGCCATCTTTCATT 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194637333078216