Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2991 100 2e-16 seq3318 98.7 9e-16 >seq2991 Length=32481 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| ||||| || || | || | ||| || || ||| || || |||||||||||||| Sbjct 26344 GCCACCTCTCAACCGAAGAACGAGATGCAGTGTTGACTCCTTCTGGATATTATAATCGGC 26285 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 || || || | || |||||||| || || || || || |||||||||||||| | ||| Sbjct 26284 GAGGGTACGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 26225 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || ||| |||||| ||| || || | | | | ||||| ||||| || Sbjct 26224 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGGACTCTAC 26165 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || | || || | || ||||||| || || || ||||| |||||||||| Sbjct 26164 CTCTAGGGTTATGGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCATCTTTA 26112 >seq3318 Length=237370 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || ||||| || || |||||||| || || || |||| || |||||||| || || || Sbjct 45663 TCCTTTTGGATGTTGTAATCGGCTAGGGTACGGCCGTCTTCGAGCTGTTTTCCGGCGAAG 45604 Query 39154 ATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || ||||||||||||| ||||||| | || ||||||||| ||| || | | | ||| Sbjct 45603 ATCAGACGCTGCTGGTCCGGTGGGATCCCT-TCTTTGTCCTGGATCTT-AGCCTTAACGT 45546 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||||| |||||| |||| ||||| | || || || || || || | Sbjct 45545 TGTCGATGGTGTCGCTGCTCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGTGTCTTGA 45486 Query 39272 CAAAGATTTGCATCT 39286 | ||||| ||||||| Sbjct 45485 CGAAGATCTGCATCT 45471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429452603914532