Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3419 134 9e-27 seq17702 107 1e-18 seq3318 93.3 3e-14 seq3447 87.8 1e-12 >seq3419 Length=773737 Score = 134 bits (148), Expect = 9e-27 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||||| || || ||||| ||||| | |||||||| | Sbjct 377785 ATGCAGATTTTCGTGAAAACCCTGACCGGTAAAACTATCACATTGGAAGTTGAAAGTTCT 377726 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | ||| ||| ||||| |||||| | || |||||||| Sbjct 377725 GACACAATTGACAATGTCAAAGC-AAAGATTCAGGACAAGGAAGGTATTCCACCAGATCA 377667 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || |||||||| |||||||| || ||||| | |||||| | | |||||||| Sbjct 377666 GCAAAGGTTGATATTTGCTGGCAAACAGCTTGAAGATGGTCGCACTCTTGCAGATTACAA 377607 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 377606 TATTCAGAAGGAGTCCAC 377589 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || || || || |||||||| || |||||||| ||||| | Sbjct 376875 AATGCAGATATTTGTGAAGACGCTGACAGGAAAAACCATTACTCTCGAGGTTGAGAGTTC 376816 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||| | ||| | || | | |||||||| ||| | || || |||| Sbjct 376815 TGATACAATTGATAATGTCAAAGCTAAGA-TCCAAGACAAAGAGGGTATTCCTCCTGATC 376757 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| || || || ||||| || | ||| || | | ||||||| Sbjct 376756 AGCAGAGGTTGATCTTTGCAGGTAAGCAGCTGGAGGATGGACGTACCCTGGCAGATTACA 376697 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || |||||||| Sbjct 376696 ACATCCAGAAGGAGTCCAC 376678 Score = 98.7 bits (108), Expect = 7e-16 Identities = 143/198 (72%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| || ||||| ||||| || ||||| || | Sbjct 377557 ATGCAAATCTTTGTGAAAACCCTCACTGGGAAAACCATCACACTGGAAGTGGAGAGTTCT 377498 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| ||||| | || ||| ||||| || || | || || ||||| Sbjct 377497 GACACAATTGATAATGTTAAAGC-CAAGATTCAGGACAAGGAGGGAATCCCCCCTGATCA 377439 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || |||||||| |||||||| || ||||| | | || || | || ||||| Sbjct 377438 GCAGAGGTTGATATTTGCGGGCAAACAGCTAGAAGATGGCAGGACCTT-GCTGACTACAA 377380 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 377379 CATTCAGAAGGAGTCTAC 377362 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || ||||| ||||| || || ||| | ||| |||| | Sbjct 381753 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAGACCATTACTTTGGAATTTGAAAGTTCT 381694 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| | |||| || ||||| || || | || || || || Sbjct 381693 GATACCATTGATAATGTTAAGGCCAAAA-TTCAAGACAAGGAGGGAATCCCACCGGACCA 381635 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||||||||| || || ||||| ||||| | | | ||| | | || ||||| Sbjct 381634 ACAAAGGTTAATATTTGCTGGTAAGCAACTTGAAGATGGAAGAACTCTTGCTGACTACAA 381575 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || |||||||| || |||| || || Sbjct 381574 CATCCAGAAAGAGTCAACCCTACACTTGGT 381545 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || || || || || || ||||| | |||||||| | Sbjct 377102 ATGCAGATTTTTGTGAAGACTCTTACTGGGAAGACAATCACCTTGGAAGTTGAAAGTTCA 377043 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || || |||| | ||||| ||||| | || ||||| || Sbjct 377042 GATACCATTGACAATGTCAAGACTAAAA-TCCAAGACAAGGAAGGGATTCCACCAGACCA 376984 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| || || || |||| || | | || |||| |||||||| Sbjct 376983 ACAGAGGCTGATTTTTGCTGGTAAGCAGTTGGAGGATGGGAGGACCTTAGCTGATTACAA 376924 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || ||||| || | ||||| || | | ||||| || ||| Sbjct 376923 CATTCAGAAGGAGTCAACTCTCCATTTGGTGCTTCGATTGCGTGGTGGA 376875 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| || || || || ||||| |||||| | |||||||| | Sbjct 381525 ATGCAAATTTTCGTTAAGACTCTTACTGGGAAAACCATCACTTTGGAAGTTGAGAGTTCT 381466 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | || | |||||| ||||| || ||| | || ||||| || Sbjct 381465 GATACTATTGACAATGTCAAGGC-AAAAATCCAGGACAAGGAGGGTATCCCACCAGACCA 381407 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | |||||||| || || || || || || | | | || | | || || || Sbjct 381406 ACAAAGGCTCATATTTGCTGGTAAGCAGCTTGAGGATGGAAGAACCCTTGCAGACTATAA 381347 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| || || ||| | || || || Sbjct 381346 TATCCAAAAGGAATCTACACTCCACTTGGT 381317 >seq17702 Length=19512 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || |||||||| || ||||| | | Sbjct 10553 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTTGAGAGCTCT 10612 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || ||| ||||||||||| | || || || || Sbjct 10613 GACACCATTGATAACGTCAAGGCGAAGATTCAGGACAAAGAAGGCATCCCTCCTGACCAG 10672 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | ||||| |||||||| || || || || | ||||| | | ||||||||| Sbjct 10673 CAGAGGCTTATATTCGCCGGCAAGCAGCTCGAGGATGGTCGCACCCTTGCTGATTACAAC 10732 Query 23791 ATACAAAAAGAGTCCAC 23807 ||||| ||||||||||| Sbjct 10733 ATACAGAAAGAGTCCAC 10749 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| ||||| || || || |||||||| || ||||| | | Sbjct 10325 ATGCAGATCTTTGTAAAAACTCTCACCGGCAAGACCATCACTCTTGAGGTTGAGAGCTCT 10384 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| ||||| | | || || ||| ||||||||||| | || || || || Sbjct 10385 GACACCGTTGATAACGTCAAGGCGAAGATTCAGGACAAAGAAGGCATCCCTCCTGACCAG 10444 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || |||||||| || || || || | || || | | ||||||||| Sbjct 10445 CAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGTACCCTTGCTGATTACAAC 10504 Query 23791 ATACAAAAAGAGTCCAC 23807 ||||| ||||||||||| Sbjct 10505 ATACAGAAAGAGTCCAC 10521 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || ||||| || |||||||| || || || | | Sbjct 11009 ATGCAGATTTTTGTGAAGACCCTAACTGGAAAGACCATCACTCTGGAGGTAGAGAGCTCT 11068 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || || || || ||||| | || ||||| || Sbjct 11069 GATACCATTGACAATGTGAAGGC-GAAGATCCAGGATAAGGAAGGGATCCCACCAGACCA 11127 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||| || || || ||||| || | | || | | ||||| || Sbjct 11128 ACAACGTTTGATCTTTGCAGGTAAGCAGCTGGAGGATGGCAGGACCCTGGCGGATTATAA 11187 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| ||||| Sbjct 11188 CATCCAGAAAGAATCCAC 11205 >seq3318 Length=237370 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| || || || ||||| | || || || || Sbjct 45473 ATGCAGATCTTCGTCAAGACACTCACCGGCAAGACCATCACCTTGGAGGTGGAGAGCAGC 45532 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| | || | | ||||||||||| | || || || || Sbjct 45533 GACACCATCGACAACGTTAAGGCTAAGA-TCCAGGACAAAGAAGGGATCCCACCGGACCA 45591 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| ||||| || ||||||| || || ||| ||||||||| Sbjct 45592 GCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGTACCCTAGCCGATTACAA 45651 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| || || || Sbjct 45652 CATCCAAAAGGAATCGAC 45669 >seq3447 Length=1078458 Score = 87.8 bits (96), Expect = 1e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| || || || || || || || || ||||| || Sbjct 808258 AAAATGCAGATATTCGTGAAAACCCTAACCGGGAAGACCATAACCCTAGAGGTTGAGTCA 808199 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || | || ||| | || || || || || || || || | || ||||| Sbjct 808198 TCGGATACGATCGACAATGTGAAGAC-GAAGATCCAGGATAAGGAGGGAATCCCACCAGA 808140 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| | || || || || |||||||| || |||| ||||| | | || || Sbjct 808139 CCAGCAGCGGCTGATTTTCGCAGGGAAACAACTCGAGGACGGCCGCACGCTCGCGGACTA 808080 Query 23787 CAACATACAAAAAGAGTCCACA 23808 ||||| || || || |||||| Sbjct 808079 TAACATCCAGAAGGAATCCACA 808058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337936421344112