Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06]
17,764 sequences; 369,781,828 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq3444 107 3e-18
>seq3444
Length=1312069
Score = 107 bits (118), Expect = 3e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813
||||| ||||| | ||| | ||||| | ||| | || | || |||||||| ||| ||
Sbjct 1026245 CCTCCTTGATCAACATAACGTGCAGTATCATTGAATACCCGCAGCATTGGAACAATACCA 1026304
Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873
||||| ||||||||||| ||| |||||| || || |||||| || || || ||
Sbjct 1026305 TTAGAAGTACCATTTGTCCCACGAATATAGCTCCCTGTTGCACGGATGTTGTGAACTGAG 1026364
Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933
| || || ||||| || ||| ||| | |||||| ||||| || ||||| |||
Sbjct 1026365 ACACCAATCCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTATCATATATG 1026424
Query 76934 CCCTCTATACTATCATCCATCATG 76957
||||| || |||||||| |||||
Sbjct 1026425 CCCTCAATGCTATCATCTTTCATG 1026448
Score = 104 bits (114), Expect = 3e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| || ||||| |||| |||||||| ||||||||||||||| || ||| | | || |
Sbjct 1026619 GTGCCAGCATTGAACAGGGTAGGAGAAGCATGAGTGAACCATCGTTGAGACATCATATGG 1026678
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
|| |||| |||||| | ||| ||||| | |||||||| |||||||| | ||||| |
Sbjct 1026679 TACGTTTTAATAACAGATTCAATATCATTCTTGTGAATTCCAACAGCGACTCTCATCAGC 1026738
Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173
|| ||||| || | ||| ||| ||| | | || || | ||| || | || |
Sbjct 1026739 ATGTGCTGTGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAGGACCTCTCAAGG 1026798
Query 77174 GTTTTAAAACCAAAATA 77190
||||| || ||||||||
Sbjct 1026799 GTTTTGAATCCAAAATA 1026815
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712776092916480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |