Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3444 107 3e-18 >seq3444 Length=1312069 Score = 107 bits (118), Expect = 3e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | ||||| | ||| | || | || |||||||| ||| || Sbjct 1026245 CCTCCTTGATCAACATAACGTGCAGTATCATTGAATACCCGCAGCATTGGAACAATACCA 1026304 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||| ||||||||||| ||| |||||| || || |||||| || || || || Sbjct 1026305 TTAGAAGTACCATTTGTCCCACGAATATAGCTCCCTGTTGCACGGATGTTGTGAACTGAG 1026364 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || ||| ||| | |||||| ||||| || ||||| ||| Sbjct 1026365 ACACCAATCCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTATCATATATG 1026424 Query 76934 CCCTCTATACTATCATCCATCATG 76957 ||||| || |||||||| ||||| Sbjct 1026425 CCCTCAATGCTATCATCTTTCATG 1026448 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| |||| |||||||| ||||||||||||||| || ||| | | || | Sbjct 1026619 GTGCCAGCATTGAACAGGGTAGGAGAAGCATGAGTGAACCATCGTTGAGACATCATATGG 1026678 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||| |||||| | ||| ||||| | |||||||| |||||||| | ||||| | Sbjct 1026679 TACGTTTTAATAACAGATTCAATATCATTCTTGTGAATTCCAACAGCGACTCTCATCAGC 1026738 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || ||||| || | ||| ||| ||| | | || || | ||| || | || | Sbjct 1026739 ATGTGCTGTGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAGGACCTCTCAAGG 1026798 Query 77174 GTTTTAAAACCAAAATA 77190 ||||| || |||||||| Sbjct 1026799 GTTTTGAATCCAAAATA 1026815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712776092916480