Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3318 156 4e-33 seq17702 114 1e-20 seq3447 107 2e-18 seq3419 100 3e-16 >seq3318 Length=237370 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||||| || || ||||||||||||||||||||||| | Sbjct 46155 CCACCACGAAGACGGAGAACCAGATGGAGGGTTGACTCCTTCTGAATGTTATAGTCGGCG 46096 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | |||| ||||||||||| |||||||| ||||| | ||| ||||| | ||| Sbjct 46095 AGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 46036 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || | || || | ||| | | | |||||||| ||| || Sbjct 46035 ATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCAATTGTGTCGCTGCTCTCTAC 45977 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 45976 CTCGAGGGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCAT 45929 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||||| || || ||||||||||||||||||||||| | Sbjct 46383 CCACCACGAAGACGGAGAACCAGATGGAGGGTCGACTCCTTCTGAATGTTATAGTCGGCG 46324 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | |||| || |||||||| |||||||| ||||| | ||| ||||| | ||| Sbjct 46323 AGGGTCCTGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 46264 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || | || || | ||| | | | |||||||| ||| || Sbjct 46263 ATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCTAC 46205 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || ||||| || || || || ||||| ||||| |||||||| Sbjct 46204 CTCGAGGGTGATCGTCTTCCCTGTAAGGGTCTTGACGAAGATCTGCAT 46157 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || |||||||| ||||| || || | Sbjct 45927 CCACCACGGAGACGGAGCACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCCGCC 45868 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| | |||| ||||||||||| |||||||| ||||| | ||| ||||| | ||| Sbjct 45867 AAGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 45808 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| || | || || | |||| | | | |||||||| ||| || Sbjct 45807 ATGCCCTCCTTATCC-TGGATCTTGGCCTTAACGTTGTCAATTGTGTCGCTGCCCTCAAC 45749 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || ||||| |||||||| || ||||| ||||| |||||||| Sbjct 45748 CTCAAGGGTGATCGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 45701 Score = 118 bits (130), Expect = 1e-21 Identities = 145/193 (75%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 ||||| || ||||| || |||| ||||| || |||| |||||||| || |||||||| Sbjct 45663 TCCTTTTGGATGTTGTAATCGGCTAGGGTACGGCCGTCTTCGAGCTGTTTTCCGGCGAAG 45604 Query 41732 ATCAGGCGCTGTTGGTCCGC-GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 ||||| ||||| ||||||| |||| | || || |||||| ||| || ||| |||| Sbjct 45603 ATCAGACGCTGCTGGTCCGGTGGGATCCCT-TCTTTGTCCTGGATCTTAGCCTT-AACGT 45546 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | |||||||| ||||||||||| || || || || || || || ||||| | Sbjct 45545 TGTCGATGGTGTCGCTGCTCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGTGTCTTGA 45486 Query 41850 CGAAAATCTGCAT 41862 |||| |||||||| Sbjct 45485 CGAAGATCTGCAT 45473 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || ||||||||| ||||||||||| | Sbjct 46611 CCACCACGAAGACGAAGAACCAGGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGCC 46552 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | |||| || |||||||| || ||||| |||| | ||| ||||| | ||| Sbjct 46551 AATGTCCTGCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGG 46492 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| || | || || | ||| | | | |||||||| ||| || Sbjct 46491 ATCCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCTAC 46433 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || ||||| || || || || ||||| ||||| |||||||| Sbjct 46432 CTCGAGGGTGATCGTCTTCCCTGTAAGGGTCTTGACGAAGATCTGCAT 46385 >seq17702 Length=19512 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||||||| || ||| ||||||||||| || ||||| | |||||||| |||| || Sbjct 10305 ACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGCAAGGGTGCGTCCGTCCTCC 10246 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| ||||| ||||| ||||||||||| | || | | ||||| | | || Sbjct 10245 AGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCAGGAGGTATCCCTTCCTTAT-CTTG 10187 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | ||||||| ||| | | | |||||| ||| ||||||| ||||| || || Sbjct 10186 GATCTTTGCTTTCACGTTGTCAATAGTGTCTGAACTCTCGACCTCCAGAGTTATGGTCTT 10127 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || ||||| || ||||| Sbjct 10126 GCCGGTGAGAGTTTTCACGAAGATTTGCAT 10097 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || || || ||| ||| ||||| ||||| || || | |||||||| | || ||| Sbjct 10761 ACAAGGTGGAGGGTGGACTCTTTCTGTATGTTGTAATCAGCAAGGGTGCGACCATCCTCG 10702 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||||||||| || | ||| ||||| | || | || || |||||| || Sbjct 10701 AGCTGCTTGCCGGCGAATATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCC-TG 10643 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGT 41829 | | || || | ||| | | ||||| ||| ||| ||||| | || || || Sbjct 10642 AATCTTCGCCTTGACGTTATCAATGGTGTCAGAGCT---CTCAACCTCAAGAGTGATGGT 10586 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| || || |||||||| Sbjct 10585 CTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 10553 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || || || ||| ||| ||||| ||||| || || | ||||| || | || ||| Sbjct 10533 ACAAGGTGGAGGGTGGACTCTTTCTGTATGTTGTAATCAGCAAGGGTACGACCATCCTCG 10474 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||||||||| || || | ||| ||||| | || | || || |||||| || Sbjct 10473 AGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCC-TG 10415 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGT 41829 | | || || | ||| | || ||||| ||| ||| ||||| | || || || Sbjct 10414 AATCTTCGCCTTGACGTTATCAACGGTGTCAGAGCT---CTCAACCTCAAGAGTGATGGT 10358 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || || ||||| || ||||||||| Sbjct 10357 CTTGCCGGTGAGAGTTTTTACAAAGATCTGCATG 10324 >seq3447 Length=1078458 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| |||||||| ||||||||||| | ||| ||||| |||| ||| Sbjct 808047 ACCAGGTGCAGTGTGGATTCCTTCTGGATGTTATAGTCCGCGAGCGTGCGGCCGTCCTCG 808106 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || || || || ||||| ||||| ||||| ||||| | || | | |||||| ||| | Sbjct 808107 AGTTGTTTCCCTGCGAAAATCAGCCGCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGG 808166 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 || || |||| || | | | || || ||||| ||||| | ||||| || || Sbjct 808167 ATCTTCGTCTTC-ACATTGTCGATCGTATCCGATGACTCAACCTCTAGGGTTATGGTCTT 808225 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || ||||| |||||||| || Sbjct 808226 CCCGGTTAGGGTTTTCACGAATATCTGCATTTT 808258 >seq3419 Length=773737 Score = 100 bits (110), Expect = 3e-16 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| || || ||| |||||||||||| || || || | || ||||| Sbjct 377568 AGACGAAGAACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCTGCAAGAGTGCGA 377627 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| || ||||||| | || || || | |||| | ||| Sbjct 377628 CCATCTTCAAGCTGTTTGCCAGCAAATATCAACCTTTGCTGATCTGGTGGAATACCTTCC 377687 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGAC--TCCACCTCCACCG 41822 |||||| ||| | ||||||| || | || | ||| | || || || |||| | Sbjct 377688 TTGTCC-TGAATCTTTGCTTTGACATTGTCA-ATTGTGTCAGAACTTTCAACTTCCAATG 377745 Query 41823 TTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || |||||||| ||||| || || ||||||||||||||| Sbjct 377746 TGATAGTTTTACCGGTCAGGGTTTTCACGAAAATCTGCATG 377786 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || ||||| || ||||| |||||||| ||||| | Sbjct 381071 CCACCACGAAGACGAAGGACAAGGTGCAGAGTTGATTCCTTTTGAATGTTGTAGTCTGCC 381130 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| | | | || || |||||||| || || || |||| | ||| ||||| | || Sbjct 381131 AAGGTCCTCCCATCCTCTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGTGGG 381190 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814 | | ||||||||| ||||||| ||| | || || | |||| ||||| Sbjct 381191 ATTCCCTCCTTGTCTTGGATTTTTGCCTTTA-CGTTATCAATGGTGTCAGAACTTTCCAC 381249 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || || || || |||| ||||| || |||||||||||| Sbjct 381250 CTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATG 381298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462201345396800