Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq293582 120 6e-22
seq294625 107 4e-18
seq301054 98.7 2e-15
seq298782 98.7 2e-15
seq286929 98.7 2e-15
seq269752 98.7 2e-15
seq244471 98.7 2e-15
seq234340 98.7 2e-15
seq224028 98.7 2e-15
seq180136 98.7 2e-15
seq138622 98.7 2e-15
seq113443 98.7 2e-15
seq66988 98.7 2e-15
seq45347 98.7 2e-15
seq6294 98.7 2e-15
>seq293582
Length=2029
Score = 120 bits (132), Expect = 6e-22
Identities = 312/471 (66%), Gaps = 6/471 (1%)
Strand=Plus/Minus
Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGT 230229
|| || || ||||| ||||||||| | ||||| || || || | || ||||| ||
Sbjct 1460 TCCTTCGCGGAGCGGATCGTCGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCCGGAAGC 1401
Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCT--CGGTCTGTCTA 230287
|||||||||||||| ||||| ||| || ||||||| ||||| || ||| | |
Sbjct 1400 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCGGGCCTAACGTTCT--CCA 1343
Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT-ATGTATTCA 230346
|||| || ||| | ||||| || || || | |||| || |||| || ||
Sbjct 1342 ACGAATTGATCTCGAGGGACGAAGGCCTGCACTGCGATTTCG-CGTGCTTGATCTACGGT 1284
Query 230347 AAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAA 230406
| | | | ||||| ||| ||| || | || | | || || || ||
Sbjct 1283 TTGTTGAACATGAAGCTGAGCGAGGAGCGGGTTAAGAAGATTGTGGCGGACGCGGTGGAG 1224
Query 230407 AACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAA 230466
| ||| | |||||| | || ||||| | || ||| | || | || ||||||| ||
Sbjct 1223 ATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGTGGTCTGGTGGGGATGAACGGCGAT 1164
Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAG 230526
|| ||| | ||| ||||| ||||| || || || | || || || | || |||| |
Sbjct 1163 CTGATGAGCACGTATATCGAGTTCGTGGCGGATCGGTTGTTGGTGGCGTTGGGGTACGGG 1104
Query 230527 AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAG 230586
|| ||||||| |||| || |||| | |||||||| |||||| | || ||||||
Sbjct 1103 AAGATGTACAAGGTGCAGAATCCGTTTGATTGGATGGAGCTGATTTCGTTGCAGGGGAAG 1044
Query 230587 ACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637
|| ||||||||||| ||| | || | || || |||| | || |||||||
Sbjct 1043 ACGAACTTCTTCGAGAAGAGGGTTGGGGAGTACCAGAAGGCTTCTGTGATG 993
>seq294625
Length=4757
Score = 107 bits (118), Expect = 4e-18
Identities = 170/241 (71%), Gaps = 2/241 (1%)
Strand=Plus/Minus
Query 230384 AAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTC 230443
||||| || | || | || || | ||| | |||||| | || ||||| | || || |
Sbjct 4030 AAATCGTTTCCGACTCGGTGGAGATCGAGAGAGAGTTCGTCTGCGACGCGTTACCGTG-C 3972
Query 230444 GC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGC 230502
|| || | || ||||| | ||| || ||| | |||||||||| ||||| || ||| |
Sbjct 3971 GCTCTCGTGGGGATGAATGGTGACCTCATGAGTAAGTACATCGAGTTCGTTGCTGACAGG 3912
Query 230503 ATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATG 230562
|||| || || | || | | |||| |||||||| | |||| || || | | |||
Sbjct 3911 CTTTTGGTGTCATTGGGATGTGGGAAATTGTACAACGCACAGAATCCATTCGATTGGATG 3852
Query 230563 GAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG 230622
||||| |||||| | ||||||||||| || |||||||| || | || | || ||||||
Sbjct 3851 GAGCTGATTTCGTTACAAGGGAAGACGAATTTCTTCGAGAAAAGAGTTGGAGAGTATCAG 3792
Query 230623 A 230623
|
Sbjct 3791 A 3791
>seq301054
Length=11359
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 10566 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10507
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 10506 CCCACGGTGGGC 10495
>seq298782
Length=8879
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 4363 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4304
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 4303 CCCACGGTGGGC 4292
>seq286929
Length=6020
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 349 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 290
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 289 CCCACGGTGGGC 278
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 563 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 622
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 623 CCCACGGTGGGC 634
>seq269752
Length=10266
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 9221 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9162
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 9161 CCCACGGTGGGC 9150
>seq244471
Length=4916
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 1083 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1142
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 1143 CCCACGGTGGGC 1154
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 1249 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1308
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 1309 CCCACGGTGGGC 1320
>seq234340
Length=924
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 654 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 595
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 594 CCCACGGTGGGC 583
>seq224028
Length=17568
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 199 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 140
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 139 CCCACGGTGGGC 128
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 348 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 289
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 288 CCCACGGTGGGC 277
>seq180136
Length=10801
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 9000 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9059
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 9060 CCCACGGTGGGC 9071
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 9304 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9363
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 9364 CCCACGGTGGGC 9375
Score = 95.1 bits (104), Expect = 3e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 9150 GCCCGTCTAGCTCAGATGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9209
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 9210 CCCACGGTGGGC 9221
>seq138622
Length=8941
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 8148 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8089
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 8088 CCCACGGTGGGC 8077
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 8428 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8369
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 8368 CCCACGGTGGGC 8357
>seq113443
Length=2771
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 978 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 919
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 918 CCCACGGTGGGC 907
>seq66988
Length=18579
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 16210 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16151
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 16150 CCCACGGTGGGC 16139
>seq45347
Length=5345
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 2610 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2669
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 2670 CCCACGGTGGGC 2681
>seq6294
Length=16445
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 1721 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1780
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 1781 CCCACGGTGGGC 1792
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1051536510336780
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |