Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq293582 120 6e-22 seq294625 107 4e-18 seq301054 98.7 2e-15 seq298782 98.7 2e-15 seq286929 98.7 2e-15 seq269752 98.7 2e-15 seq244471 98.7 2e-15 seq234340 98.7 2e-15 seq224028 98.7 2e-15 seq180136 98.7 2e-15 seq138622 98.7 2e-15 seq113443 98.7 2e-15 seq66988 98.7 2e-15 seq45347 98.7 2e-15 seq6294 98.7 2e-15 >seq293582 Length=2029 Score = 120 bits (132), Expect = 6e-22 Identities = 312/471 (66%), Gaps = 6/471 (1%) Strand=Plus/Minus Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGT 230229 || || || ||||| ||||||||| | ||||| || || || | || ||||| || Sbjct 1460 TCCTTCGCGGAGCGGATCGTCGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCCGGAAGC 1401 Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCT--CGGTCTGTCTA 230287 |||||||||||||| ||||| ||| || ||||||| ||||| || ||| | | Sbjct 1400 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCGGGCCTAACGTTCT--CCA 1343 Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT-ATGTATTCA 230346 |||| || ||| | ||||| || || || | |||| || |||| || || Sbjct 1342 ACGAATTGATCTCGAGGGACGAAGGCCTGCACTGCGATTTCG-CGTGCTTGATCTACGGT 1284 Query 230347 AAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAA 230406 | | | | ||||| ||| ||| || | || | | || || || || Sbjct 1283 TTGTTGAACATGAAGCTGAGCGAGGAGCGGGTTAAGAAGATTGTGGCGGACGCGGTGGAG 1224 Query 230407 AACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAA 230466 | ||| | |||||| | || ||||| | || ||| | || | || ||||||| || Sbjct 1223 ATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGTGGTCTGGTGGGGATGAACGGCGAT 1164 Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAG 230526 || ||| | ||| ||||| ||||| || || || | || || || | || |||| | Sbjct 1163 CTGATGAGCACGTATATCGAGTTCGTGGCGGATCGGTTGTTGGTGGCGTTGGGGTACGGG 1104 Query 230527 AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAG 230586 || ||||||| |||| || |||| | |||||||| |||||| | || |||||| Sbjct 1103 AAGATGTACAAGGTGCAGAATCCGTTTGATTGGATGGAGCTGATTTCGTTGCAGGGGAAG 1044 Query 230587 ACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 || ||||||||||| ||| | || | || || |||| | || ||||||| Sbjct 1043 ACGAACTTCTTCGAGAAGAGGGTTGGGGAGTACCAGAAGGCTTCTGTGATG 993 >seq294625 Length=4757 Score = 107 bits (118), Expect = 4e-18 Identities = 170/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 230384 AAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTC 230443 ||||| || | || | || || | ||| | |||||| | || ||||| | || || | Sbjct 4030 AAATCGTTTCCGACTCGGTGGAGATCGAGAGAGAGTTCGTCTGCGACGCGTTACCGTG-C 3972 Query 230444 GC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGC 230502 || || | || ||||| | ||| || ||| | |||||||||| ||||| || ||| | Sbjct 3971 GCTCTCGTGGGGATGAATGGTGACCTCATGAGTAAGTACATCGAGTTCGTTGCTGACAGG 3912 Query 230503 ATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATG 230562 |||| || || | || | | |||| |||||||| | |||| || || | | ||| Sbjct 3911 CTTTTGGTGTCATTGGGATGTGGGAAATTGTACAACGCACAGAATCCATTCGATTGGATG 3852 Query 230563 GAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG 230622 ||||| |||||| | ||||||||||| || |||||||| || | || | || |||||| Sbjct 3851 GAGCTGATTTCGTTACAAGGGAAGACGAATTTCTTCGAGAAAAGAGTTGGAGAGTATCAG 3792 Query 230623 A 230623 | Sbjct 3791 A 3791 >seq301054 Length=11359 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 10566 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10507 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 10506 CCCACGGTGGGC 10495 >seq298782 Length=8879 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4363 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4304 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4303 CCCACGGTGGGC 4292 >seq286929 Length=6020 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 349 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 290 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 289 CCCACGGTGGGC 278 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 563 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 622 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 623 CCCACGGTGGGC 634 >seq269752 Length=10266 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 9221 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9162 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9161 CCCACGGTGGGC 9150 >seq244471 Length=4916 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1083 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1142 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1143 CCCACGGTGGGC 1154 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1249 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1308 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1309 CCCACGGTGGGC 1320 >seq234340 Length=924 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 654 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 595 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 594 CCCACGGTGGGC 583 >seq224028 Length=17568 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 199 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 140 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 139 CCCACGGTGGGC 128 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 348 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 289 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 288 CCCACGGTGGGC 277 >seq180136 Length=10801 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 9000 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9059 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9060 CCCACGGTGGGC 9071 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 9304 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9363 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9364 CCCACGGTGGGC 9375 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 9150 GCCCGTCTAGCTCAGATGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9209 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9210 CCCACGGTGGGC 9221 >seq138622 Length=8941 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 8148 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8089 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8088 CCCACGGTGGGC 8077 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 8428 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8369 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8368 CCCACGGTGGGC 8357 >seq113443 Length=2771 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 978 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 919 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 918 CCCACGGTGGGC 907 >seq66988 Length=18579 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 16210 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16151 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 16150 CCCACGGTGGGC 16139 >seq45347 Length=5345 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2610 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2669 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2670 CCCACGGTGGGC 2681 >seq6294 Length=16445 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1721 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1780 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1781 CCCACGGTGGGC 1792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1051536510336780