Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq294625 149 6e-31 >seq294625 Length=4757 Score = 149 bits (164), Expect = 6e-31 Identities = 385/579 (66%), Gaps = 11/579 (2%) Strand=Plus/Plus Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023 || ||||||||||| |||||||| ||||||| || | ||||| || || ||||| Sbjct 4081 CAGGCGAAATCGCAGTGTAATCCTTCGTCTCGTGAAATCAACTCGTTGGAGAAGGTCAAT 4140 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083 || |||||| || |||||||| ||||| || || ||| ||| || || |||||| Sbjct 4141 CCAGGCATCAAACCGCGTTTCTTCAACCAGAAGATAGCGCAGAAGCTTCCCGAGAAGAAT 4200 Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA 17143 || || |||||| | || || || || | ||||| || ||| | || | | Sbjct 4201 ATCCCTTCGACGCAAGCGAAGGCAATGATACGTTCCGCAAACGAC---TCCGAGCCATCG 4257 Query 17144 ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTA 17203 ||||| || | |||| | ||| || | || | |||| || || || | || | Sbjct 4258 ATCCACCTCATCGCCCAATTGGCCTTCTTCTGGACGCAAGGAATGGTCTCCACAGCGCGA 4317 Query 17204 AATAATTTC-TCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACAT 17262 || | || |||| | || | ||| | || || || |||| ||| | ||||||||| Sbjct 4318 AACAGCCTCATCTTGTCGTTGGA-GTCCTTGATGTAGGTCTCGAGGAGCAAGCTGTACAT 4376 Query 17263 TTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTA 17321 |||||||| |||||||| || || ||||| |||||||| |||||| || || || || | Sbjct 4377 CTCGGAGTGAATGTTCTCGATTGCGATCTGGAATCCGTAGAAAGCA-CGAGCCTCGGCGA 4435 Query 17322 TTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGG 17381 |||||| || ||| | | | ||||| ||||| ||||| |||||| |||| Sbjct 4436 CTTGAACCTCTTTCATGAACCTTCCGGCTAGGTTTTCCAATACGATTCCGTCGGAGGCGG 4495 Query 17382 CGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC--CGGTGTAAGAACGCGCCA 17439 |||| || || | | || | ||||| | | |||| | ||||| || | ||| Sbjct 4496 CGAAGAAGGCGAGGACGTGAGTGATGAAGTGTCGTTCGCCGTCGGTG--AGGGAGTCCCA 4553 Query 17440 GTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTT 17499 || | || | || | ||| || || |||| |||||| || || | ||||| Sbjct 4554 GTGGCGTTGGTCCTGTGACAAATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCGGCCTT 4613 Query 17500 TTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || ||||| | |||||| | | ||| | || ||||| Sbjct 4614 CTTGTACATTTCCCAAATCTGAGGGTAGCGAATAGGGAA 4652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514544443636080