Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq294625 91.5 1e-13 >seq294625 Length=4757 Score = 91.5 bits (100), Expect = 1e-13 Identities = 249/371 (67%), Gaps = 9/371 (2%) Strand=Plus/Plus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || ||||| ||||| |||| ||||||||||| || | |||||||| || || || Sbjct 4081 CAGGCGAAATCGCAGTGTAATCCTTCGTCTCGTGAAATCAACTCGTTGGAGAAGGTCAAT 4140 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGAA 16320 || ||||| || |||||||| |||||||| || || ||| || ||||| ||||| Sbjct 4141 CCAGGCATCAAACCGCGTTTCTTCAACCAGAAGATAGC-GCAGAAGCTTCCCGAGAAGAA 4199 Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG 16380 ||| || || || | || || || || | |||||||| ||| | || || Sbjct 4200 TATCCCTTCGACGCAAGCGAAGGCAATGATACGTTCCGCAAACGACTCCGAGCCAT--CG 4257 Query 16381 AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT 16440 ||||| || |||| | ||| || | | | ||| || || || | || Sbjct 4258 -ATCCACCTCATCGCCCAATTGGCCTTCTTCTGGACGCAAGGAATGGTCTCCACAGCGCG 4316 Query 16441 AAACAATTTC-TCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACA 16499 ||||| || |||| | || | || | || || || || | || || ||||||| Sbjct 4317 AAACAGCCTCATCTTGTCGTTGGA-GTCCTTGATGTAGGTCTCGAGGAGCAAGCTGTACA 4375 Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG-AAGCATCGAGCCTCCGCT 16558 | || ||||| |||||||| || || ||||| ||||| ||| ||||| |||||||| || Sbjct 4376 TCTCGGAGTGAATGTTCTCGATTGCGATCTGGAATCCGTAGAAAGCA-CGAGCCTCGGCG 4434 Query 16559 ATTTGTACTTC 16569 | ||| || || Sbjct 4435 ACTTGAACCTC 4445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 508448797391920