Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq294625 118 1e-21
seq293582 98.7 1e-15
seq161111 98.7 1e-15
seq180108 96.9 4e-15
>seq294625
Length=4757
Score = 118 bits (130), Expect = 1e-21
Identities = 399/613 (65%), Gaps = 10/613 (2%)
Strand=Plus/Plus
Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190
||| || |||||||||||||||| || ||||||| ||| || |||||||| || ||
Sbjct 4077 CAAGCAGGCGAAATCGCAGTGTAATCCTTCGTCTCGTGAAATCAACTCGTTGGAGAAGGT 4136
Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 24249
| ||| ||||| | || || || || | ||| || || | |||| || ||| || |
Sbjct 4137 CAATCCAGGCATCAAACCGCGTTTCTTCAACCAGAAGATAG-CGCAGAAGCTTCCCGAGA 4195
Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC--CGGCGCTGTC 24307
|||| || ||||| || || |||||||| | | ||| || ||| | || | |
Sbjct 4196 AGAATATCCCTTCGACGCAAGCGAAGGCAATGATACGTTCCGCA-AACGACTCCG-AGCC 4253
Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367
|| |||||| | ||||||| ||||||||| | || ||||| || ||||| | |||
Sbjct 4254 ATCGATCCACCTCATCGCCCAATTGGCCTTCTTCTGGACGCAAGGAATGGTCTCCACAGC 4313
Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427
||| || | || || || || || | || || || | | | || ||
Sbjct 4314 GCGAAACAGCCTCATCTTGTCGTTGGAGTCCTTGATGTAGGTCTCGAGGAGCAAGCTGTA 4373
Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487
||| || || |||||||| || || || || || |||||||||||| | ||||||||
Sbjct 4374 CATCTCGGAGTGAATGTTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGAGCCTCGGC 4433
Query 24488 AATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547
| || || ||| | || | | | |||| ||||| || |||||||| |||
Sbjct 4434 GACTTGAACCTCTTTCATGAACCTTCCGGCTAGGTTTTCCAATACGATTCCGTCGGAGGC 4493
Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 24607
|| || || || | || || | || || | | |||| | || || | |||
Sbjct 4494 GGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGTCGTTCGCCGTCGGTGAGGGAGTCCCA 4553
Query 24608 AT--CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665
| | ||| || | || | ||| || || || | ||||| || || || || |||
Sbjct 4554 GTGGCGTTG--GTCCTGTGACAAATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCGGCC 4611
Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGA 24725
|| || ||||| | ||| || | | | || |||| || || ||| ||||||| ||
Sbjct 4612 TTCTTGTACATTTCCCAAATCTGAGGGTAGCGAATAGGGAACATACAGAATCTATCGGGG 4671
Query 24726 TTTTTTGCAAGGA 24738
|| |||||||
Sbjct 4672 TTAGGAGCAAGGA 4684
>seq293582
Length=2029
Score = 98.7 bits (108), Expect = 1e-15
Identities = 106/138 (77%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188
||||| || |||||||||||||| || || ||||| || || ||||||||||| |||
Sbjct 1291 ATCAAGCACGCGAAATCGCAGTGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAAC 1350
Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGA 24247
|| || || ||||| ||||| ||||| || ||||| || |||| |||| || ||| ||
Sbjct 1351 GTTAGGCCCGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGCTTCCGGA 1409
Query 24248 AAAGAAAATTCCTTCTAC 24265
||||| || || || ||
Sbjct 1410 GAAGAAGATGCCCTCGAC 1427
>seq161111
Length=12134
Score = 98.7 bits (108), Expect = 1e-15
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244
||||| || || | || | ||| || | ||| | || | ||||||||||||||| |||
Sbjct 5271 CCTCCTTGGTCAACATAACGAGCTGTATCATTGAAGACACGCAACATTGGAATAATGCCA 5212
Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304
||||||| ||||| || || || || |||||| | | ||| |||||| || ||
Sbjct 5211 TTGGATGTGCCATTTGTTCCACGTATGTAACTTCCAGTTGAACGGATATTATGAACAGAG 5152
Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364
| ||| || || ||||| ||| ||| | || ||| || || || ||||| |||
Sbjct 5151 ACACCAATTCCTCCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTGTCATATATG 5092
Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406
|| || || |||||||| ||||| | ||||| ||||||
Sbjct 5091 CCTTCAATGCTATCATCTTTCATGCATATCAGAAAGCAGCTA 5050
>seq180108
Length=14591
Score = 96.9 bits (106), Expect = 4e-15
Identities = 155/222 (70%), Gaps = 3/222 (1%)
Strand=Plus/Plus
Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244
||||| || || | || | || || | ||| | || | ||||||||||||||| |||
Sbjct 8328 CCTCCTTGGTCAACATAACGGGCAGTATCATTGAAGACACGCAACATTGGAATAATGCCA 8387
Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304
||||||| |||||| || || || || |||||| | |||||||||||| || ||
Sbjct 8388 TTGGATGTACCATTTGTTCCACGTATGTAACTTCCAGTTGCACGAATATTATGAACAGAG 8447
Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364
| ||| || || ||||| ||| ||| | || ||| || || || ||||| |||
Sbjct 8448 ACACCAATTCCTCCTGC---TTTGCTGATAACAGCACATTCCTTGAAAGTGTCATATATG 8504
Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406
|| || || |||||| | ||||| | || || ||||||
Sbjct 8505 CCTTCAATGCTATCACCTTTCATGCATATCAGGAAGCAGCTA 8546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590278712342880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |