Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq25275 100 4e-16 seq145598 91.5 2e-13 >seq25275 Length=8276 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || |||||||| || || | ||| | ||| | Sbjct 4791 ATGCAAATCTTTGTCAAAACCCTCACCGGCAAAACCATCACGCTGGAGGTCGAAAGCTCT 4850 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || ||||||||||| || |||||||| || || || || Sbjct 4851 GACACCATTGACAACGTGAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCAG 4910 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || || ||||| ||||| || | ||||| | || || | | || ||||| Sbjct 4911 CAGAGACTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGTACTCTTGCCGACTATAAC 4970 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | || |||||| | |||||| |||| ||||| Sbjct 4971 ATCCAGAAGGAGTCAACCCTTCACTTGGTTCTTCGTTTAAGAGGCGGTAT 5020 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | |||||| | || || || || || ||| | ||| |||| ||| Sbjct 5475 ATGCAGATCTTTGTGAAGACATTGACCGGAAAGACCATCACTCTCGAGGTTGAGAGCTCC 5534 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || || | || || ||||||||||| || ||||| ||||| || || Sbjct 5535 -GACACCATCGACAACGTGAAGGCTAAGATTCAAGATAAGGAGGGTATCCCACCAGACCA 5593 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || || || | |||||| |||| || | | || || || Sbjct 5594 GCAGAGGCTGATCTTTGCGGGTAAGCAGCTCGAGGATGGTCGTACGCTTGCTGACTACAA 5653 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || | ||||||||| | || || ||||||| || Sbjct 5654 CATTCAGAAGGAATCGACCCTTCATTTGGTTCTTCGATTGAGAGGTGGAAT 5704 Score = 89.7 bits (98), Expect = 8e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 124622 GAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAA 124681 |||||| ||||||||||| || || ||||| || |||||||| | || ||||| || || Sbjct 5330 GAAAATCCAAGATAAAGAGGGAATCCCACCAGACCAACAAAGATTGATCTTTGCCGGCAA 5389 Query 124682 ACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCA 124741 || | |||||| | || || | | ||| || || ||||| || |||||||| | || Sbjct 5390 GCAGCTTGAGGATGGCCGTACCCTTGCAGACTACAACATTCAGAAGGAATCAACCCTTCA 5449 Query 124742 TTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| | || || ||||||| || Sbjct 5450 CTTGGTGCTTCGATTGAGAGGTGGGAT 5476 >seq145598 Length=10865 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 124632 GATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAG 124691 || ||||| ||||| || || |||||||| ||| | |||||||| || || ||||||||| Sbjct 9643 GACAAAGAGGGTATCCCTCCAGATCAACAGAGGTTGATTTTTGCTGGCAAGCAATTAGAG 9584 Query 124692 GATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTA 124751 ||| | |||||| | | || || || || || ||||||||||| | ||| | ||| || Sbjct 9583 GATGGACGAACACTTGCTGACTACAACATCCAGAAAGAATCAACACTCCATCTTGTTCTA 9524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751075242860800