Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq284040 120 3e-22
seq259261 118 1e-21
seq25275 114 1e-20
seq156932 95.1 1e-14
seq228143 91.5 2e-13
seq216886 82.4 9e-11
>seq284040
Length=2693
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
||||| || || |||| |||| |||||| ||| |||||| || || |||||||| |||
Sbjct 985 CCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCC 926
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
| ||||| |||| || |||||||| || ||||| || | ||||||||||| | ||
Sbjct 925 AAAGTCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGG 866
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135
| | ||||||||| ||| | || | || | | | | ||||||| ||||||
Sbjct 865 ATTCCTTCCTTGTCC-TGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCAC 807
Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| | |||||| ||||| || || | |||||| || ||||| |||||
Sbjct 806 CTCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 759
>seq259261
Length=7884
Score = 118 bits (130), Expect = 1e-21
Identities = 156/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033
||||| || | ||| |||||| || || ||||| || || || |||| |||| ||
Sbjct 2585 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCCGTCCTC 2526
Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093
||||| || || ||||| ||||| ||||||||||| | ||| | || |||||||||
Sbjct 2525 GAGCTGTTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTG 2466
Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152
||| || || | ||| | | | ||||||| ||||| || || | |||||| || |
Sbjct 2465 GATCTTGGCCTTCA-CGTTGTCGATCGTGTCGGAGGATTCGACCTCCAACGTGATCGTCT 2407
Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
| |||||||| || || || ||||| ||||||||
Sbjct 2406 TCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2373
>seq25275
Length=8276
Score = 114 bits (126), Expect = 1e-20
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||||||||| | ||||| || | ||| |||||| || || |||||||| |||
Sbjct 5245 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCC 5186
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
| ||| || |||| || |||||||| || || || || | | ||||||||| | ||
Sbjct 5185 AAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 5126
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133
| | ||||||||| |||||| || | | | | ||||| |||| ||
Sbjct 5125 ATACCCTCCTTGTCTTGGATTTTCGCCTTCACGTTATCGATAGTGTCCGAGCTC---TCG 5069
Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || | |||||||||||| || ||||| || || ||||||||||||||
Sbjct 5068 ACTTCCAACGTGATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCAT 5019
Score = 109 bits (120), Expect = 6e-19
Identities = 165/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||||||||| | ||||| || | || |||||| || || || || || ||
Sbjct 5017 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTTGACTCCTTCTGGATGTTATAGTCGGCA 4958
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| || |||| || |||||||| || || || || |||| ||||||||| | ||
Sbjct 4957 AGAGTACGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGA 4898
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132
| | ||||||| | ||| |||| | | ||| | | | ||||| ||| |||
Sbjct 4897 ATACCTTCCTTGT-CTTGAATTTTAGCCTTCACGTTGTCAATGGTGTCAGAGCT---TTC 4842
Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || | ||||||||||||||| || || || || ||||||||||||||
Sbjct 4841 GACCTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 4791
Score = 87.8 bits (96), Expect = 2e-12
Identities = 161/232 (69%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015
||| ||||| || || | |||||||| | || ||||| ||||| ||||| |||||
Sbjct 5702 TCCACCTCTCAATCGAAGAACCAAATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGC 5643
Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075
|| || || | || || ||||||||||| || || || || | ||||||||| | ||
Sbjct 5642 AAGCGTACGACCATCCTCGAGCTGCTTACCCGCAAAGATCAGCCTCTGCTGGTCTGGTGG 5583
Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 43131
| | |||||| | | ||| | || | | ||| | | | ||||| |||| |
Sbjct 5582 GATACCCTCCTTAT-CTTGAATCTTAGCCTTCACGTTGTCGATGGTGTCGGAGCTC---T 5527
Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || |||| |||||||| || || || | ||||| |||||||| |||||
Sbjct 5526 CAACCTCGAGAGTGATGGTCTTTCCGGTCAATGTCTTCACAAAGATCTGCAT 5475
>seq156932
Length=6713
Score = 95.1 bits (104), Expect = 1e-14
Identities = 141/196 (72%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || || ||||| || |||| || || || ||||| |||||
Sbjct 4020 CTCCTTCTGGATGTTGTAGTCCGCAAGAGTACGGCCGTCCTCGAGTTGTTTACCGGCGAA 4079
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| | |||||||||||| | || | || |||||||| ||| || |||| |||
Sbjct 4080 GATCAATCGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGT 4138
Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167
| | | ||||| ||| ||| || || | |||||||||||||| || | ||||
Sbjct 4139 TGTCGATGGTGTCAGAGCT---TTCTACTTCAAGAGTGATGGTTTTGCCGGTCAAGGTCT 4195
Query 43168 TTACAAAGATTTGCAT 43183
| || |||||||||||
Sbjct 4196 TGACGAAGATTTGCAT 4211
>seq228143
Length=6931
Score = 91.5 bits (100), Expect = 2e-13
Identities = 148/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
|||||||| | ||| ||||| || || ||||| || || || || || |||| ||
Sbjct 2621 ACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTTCGGCCGTCCTCG 2562
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094
||||| ||||| || || ||||||| ||||||||| | || | || |||||||| |
Sbjct 2561 AGCTGTTTACCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGG 2502
Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTT 43151
|| || |||| | | | |||||| ||| || || || | |||||||||
Sbjct 2501 ATCTTGGCCTTGACGTTATCGATGGTGTCGGAGCTC---TCGACCTCCAAAGTGATGGTT 2445
Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || || || ||||| || ||||| |||||
Sbjct 2444 TTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 2413
>seq216886
Length=3225
Score = 82.4 bits (90), Expect = 9e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| |||| || || ||| ||||||||| |||| |||||||||||||||| ||||
Sbjct 1852 AAAAAGTTTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 1911
Query 60117 TCACCACTATACTAC 60131
| |||||||||||||
Sbjct 1912 TTACCACTATACTAC 1926
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 568501729805680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |