Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq284040 120 3e-22 seq259261 118 1e-21 seq25275 114 1e-20 seq156932 95.1 1e-14 seq228143 91.5 2e-13 seq216886 82.4 9e-11 >seq284040 Length=2693 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || || |||| |||| |||||| ||| |||||| || || |||||||| ||| Sbjct 985 CCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCC 926 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||||| |||| || |||||||| || ||||| || | ||||||||||| | || Sbjct 925 AAAGTCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGG 866 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||||||| ||| | || | || | | | | ||||||| |||||| Sbjct 865 ATTCCTTCCTTGTCC-TGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCAC 807 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||| ||||| || || | |||||| || ||||| ||||| Sbjct 806 CTCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 759 >seq259261 Length=7884 Score = 118 bits (130), Expect = 1e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| || | ||| |||||| || || ||||| || || || |||| |||| || Sbjct 2585 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCCGTCCTC 2526 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||| || || ||||| ||||| ||||||||||| | ||| | || ||||||||| Sbjct 2525 GAGCTGTTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTG 2466 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 ||| || || | ||| | | | ||||||| ||||| || || | |||||| || | Sbjct 2465 GATCTTGGCCTTCA-CGTTGTCGATCGTGTCGGAGGATTCGACCTCCAACGTGATCGTCT 2407 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 | |||||||| || || || ||||| |||||||| Sbjct 2406 TCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2373 >seq25275 Length=8276 Score = 114 bits (126), Expect = 1e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||||||||| | ||||| || | ||| |||||| || || |||||||| ||| Sbjct 5245 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCC 5186 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || |||| || |||||||| || || || || | | ||||||||| | || Sbjct 5185 AAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 5126 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | ||||||||| |||||| || | | | | ||||| |||| || Sbjct 5125 ATACCCTCCTTGTCTTGGATTTTCGCCTTCACGTTATCGATAGTGTCCGAGCTC---TCG 5069 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | |||||||||||| || ||||| || || |||||||||||||| Sbjct 5068 ACTTCCAACGTGATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCAT 5019 Score = 109 bits (120), Expect = 6e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||||||||| | ||||| || | || |||||| || || || || || || Sbjct 5017 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTTGACTCCTTCTGGATGTTATAGTCGGCA 4958 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| || |||||||| || || || || |||| ||||||||| | || Sbjct 4957 AGAGTACGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGA 4898 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | | ||||||| | ||| |||| | | ||| | | | ||||| ||| ||| Sbjct 4897 ATACCTTCCTTGT-CTTGAATTTTAGCCTTCACGTTGTCAATGGTGTCAGAGCT---TTC 4842 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||||||||||||| || || || || |||||||||||||| Sbjct 4841 GACCTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 4791 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| || || | |||||||| | || ||||| ||||| ||||| ||||| Sbjct 5702 TCCACCTCTCAATCGAAGAACCAAATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGC 5643 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || ||||||||||| || || || || | ||||||||| | || Sbjct 5642 AAGCGTACGACCATCCTCGAGCTGCTTACCCGCAAAGATCAGCCTCTGCTGGTCTGGTGG 5583 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 43131 | | |||||| | | ||| | || | | ||| | | | ||||| |||| | Sbjct 5582 GATACCCTCCTTAT-CTTGAATCTTAGCCTTCACGTTGTCGATGGTGTCGGAGCTC---T 5527 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||| |||||||| || || || | ||||| |||||||| ||||| Sbjct 5526 CAACCTCGAGAGTGATGGTCTTTCCGGTCAATGTCTTCACAAAGATCTGCAT 5475 >seq156932 Length=6713 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || ||||| || |||| || || || ||||| ||||| Sbjct 4020 CTCCTTCTGGATGTTGTAGTCCGCAAGAGTACGGCCGTCCTCGAGTTGTTTACCGGCGAA 4079 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | |||||||||||| | || | || |||||||| ||| || |||| ||| Sbjct 4080 GATCAATCGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGT 4138 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| ||| ||| || || | |||||||||||||| || | |||| Sbjct 4139 TGTCGATGGTGTCAGAGCT---TTCTACTTCAAGAGTGATGGTTTTGCCGGTCAAGGTCT 4195 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||||||||| Sbjct 4196 TGACGAAGATTTGCAT 4211 >seq228143 Length=6931 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | ||| ||||| || || ||||| || || || || || |||| || Sbjct 2621 ACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTTCGGCCGTCCTCG 2562 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 ||||| ||||| || || ||||||| ||||||||| | || | || |||||||| | Sbjct 2561 AGCTGTTTACCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGG 2502 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTT 43151 || || |||| | | | |||||| ||| || || || | ||||||||| Sbjct 2501 ATCTTGGCCTTGACGTTATCGATGGTGTCGGAGCTC---TCGACCTCCAAAGTGATGGTT 2445 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || ||||| || ||||| ||||| Sbjct 2444 TTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 2413 >seq216886 Length=3225 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||| || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 1852 AAAAAGTTTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 1911 Query 60117 TCACCACTATACTAC 60131 | ||||||||||||| Sbjct 1912 TTACCACTATACTAC 1926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568501729805680