Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq284040 134 9e-27 seq259261 125 5e-24 seq62239 122 6e-23 seq268484 116 2e-21 seq25275 105 4e-18 seq243249 100 2e-16 seq228143 93.3 3e-14 seq277754 84.2 1e-11 seq156932 82.4 5e-11 >seq284040 Length=2693 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| |||| |||||||| || | ||| ||| ||||| ||||||||||| | Sbjct 529 CCGCCGCGAAGCCGTAGCACCAGATGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGCT 470 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | |||| |||| |||||| || ||||| ||||| |||||||| ||| || Sbjct 469 AGGGTTCTGCCGTCCTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGA 410 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | || | | |||| ||||| ||||| Sbjct 409 ATTCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTATCGGAGCTCTCGACC 350 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| ||||||||||| || ||||| || ||||||||||| Sbjct 349 TCCAGAGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 303 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | ||| || ||||| ||||||||||| | Sbjct 757 CCGCCGCGGAGGCGTAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCT 698 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | |||| |||| |||||| || ||||| ||||| |||||||| || || Sbjct 697 AGGGTTCTGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCCGGAGGA 638 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | | | |||| ||||| ||||| Sbjct 637 ATTCCTTCCTTGTCCTGGATCTTCGCCTTGACGTTATCGATCGTATCGGAGCTCTCGACC 578 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| |||||||| |||||||| || ||||| || |||||||||||| Sbjct 577 TCCAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCATC 530 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | || || ||| ||||| || || || || ||||| |||||||| |||| | Sbjct 985 CCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCC 926 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | |||| || | ||||||||| ||||| || | ||||||||||| || Sbjct 925 AAAGTCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGG 866 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | | | |||| |||| ||| || Sbjct 865 ATTCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCACC 806 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| |||||| ||||| ||||| | || ||||| |||||||||||| Sbjct 805 TCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCATC 758 >seq259261 Length=7884 Score = 125 bits (138), Expect = 5e-24 Identities = 173/238 (73%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 34153 TTCGTCGAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTT 34212 ||| ||| | || ||||| || | ||||||||||| | || || ||||| ||||| Sbjct 2611 TTCTTCGCA-CCACCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTT 2553 Query 34213 GTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTG 34272 |||||||| || | | |||| || | ||| || || ||||| ||||| |||||||| Sbjct 2552 GTAGTCGGCTAGGGTCCTGCCGTCCTCGAGCTGTTTCCCGGCGAAGATGAGGCGCTGCTG 2493 Query 34273 GTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGG 34331 ||| | |||| | || |||||||| ||||| ||| | | | | |||| |||| Sbjct 2492 GTCCGGCGGG-ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCGG 2434 Query 34332 TCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| |||| |||||| || || || || || |||||||| ||||||||||| Sbjct 2433 AGGATTCGACCTCCAACGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 2376 >seq62239 Length=9780 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | || || ||||| ||||||||||||| Sbjct 5331 CCGCCGCGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCT 5390 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281 || | | |||| || | |||||| || ||||| ||||| || ||||||| || |||| Sbjct 5391 AGGGTCCTGCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGG 5450 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| ||||| ||| | || | | || | |||| |||||||| Sbjct 5451 -ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGATTCGAC 5509 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | || |||||||| ||||| || |||||||| |||||||||||| Sbjct 5510 CTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCACGAAGATCTGCATC 5558 >seq268484 Length=6331 Score = 116 bits (128), Expect = 2e-21 Identities = 146/195 (75%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||| || | | | |||| || | || || || ||||| Sbjct 936 TTCCTTCTGGATGTTGTAGTCGGCTAGGGGTCCGCCGTCCTCGAGCTATTTTCCGGCGAA 995 Query 34258 AATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGA 34315 ||||| |||| |||||| |||||| | || |||||||| ||||| ||||| | Sbjct 996 GATGAGGCGCTACTGGTCCGACGGG-ATGCCTTCCTTGTCTTGGATCTTG-GCTTTCACG 1053 Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375 | | | || | |||| || ||||| |||| |||||||| |||||||| || |||||| Sbjct 1054 TTGTCGATGGTGTCGGAGGACTCGACCTCCAACGTGATGGCCTTGCCGGTTAGGGTTTTC 1113 Query 34376 ACAAAGATCTGCATC 34390 || |||||||||||| Sbjct 1114 ACGAAGATCTGCATC 1128 >seq25275 Length=8276 Score = 105 bits (116), Expect = 4e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||| ||||||| || |||| |||| || | |||||| || || || Sbjct 4981 TCCTTCTGGATGTTATAGTCGGCAAGAGTACGGCCGTCCTCGAGCTGCTTTCCGGCAAAG 4922 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || | ||||||||| ||| | | |||||||| || || ||| | | | Sbjct 4921 ATCAGTCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTAGCCTTCACGTTG 4862 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | |||||| |||| ||||||||||||||||||||| ||||| ||| Sbjct 4861 TCAATGGTGTCAGAGCTTTCGACCTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACA 4802 Query 34379 AAGATCTGCATCGCTC 34394 ||||| |||||| ||| Sbjct 4801 AAGATTTGCATCCCTC 4786 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| || || ||||||| ||| |||| | || || | |||||||||||| || Sbjct 5894 TTCCTTCTGGATATTATAGTCGGCAAGCGTACGGCCATCCTCAAGCTGCTTGCCTGCAAA 5835 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || |||| ||||||||| || | | |||||| || ||| || ||||| | | Sbjct 5834 GATCAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTATCCTGGATC-TTCGCTTTAACGT 5776 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | || | |||| ||||| |||| ||||| || || ||||| | || |||| Sbjct 5775 TGTCAATGGTGTCGGAACTCTCGACTTCCAATGTGATAGTCTTCCCGGTTAAGGTCTTCA 5716 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 5715 CAAAGATCTGCAT 5703 >seq243249 Length=1014 Score = 100 bits (110), Expect = 2e-16 Identities = 138/190 (73%), Gaps = 11/190 (6%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || ||| ||||||||| || | | |||| || | ||| || || ||||| Sbjct 762 TCCTTTTGGATGCTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGTTTTCCGGCGAAG 821 Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 |||||||| |||||||| | |||| | || |||||||||||| || | | ||||| Sbjct 822 ATGAGCCGTTGCTGGTCCGGCGGG-ATGCCTTCCTTGTCGGCTTTCACGT--TGTAGATG 878 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | ||| || || || |||| ||| ||||| |||||||| ||||||||||| Sbjct 879 GTGT-------CGGAGGACTCAACCTCCAACGTTATGGTCTTGCCGGTTAGAGTTTTCAC 931 Query 34378 AAAGATCTGC 34387 |||||||||| Sbjct 932 AAAGATCTGC 941 >seq228143 Length=6931 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||| || ||| |||| |||| |||||| || |||||| Sbjct 2831 TCCTTCTGGATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCCAGCTGCTTTCCGGCGAAA 2772 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || | ||||||||| || | || || ||||| ||||| ||| | | | Sbjct 2771 ATAAGTCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTG 2712 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| ||| || || | |||||||| || ||||| | ||||||||| Sbjct 2711 TCAATGGTGTCGGAGCTTTCAACTTCTAATGTGATGGTCTTTCCGGTCAAGGTTTTCACA 2652 Query 34379 AAGATCTGCAT 34389 || |||||||| Sbjct 2651 AAAATCTGCAT 2641 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||| | || ||| |||| || | ||| || || || || Sbjct 2604 TTCCTTCTGGATGTTGTAGTCTGCGAGGGTTCGGCCGTCCTCGAGCTGTTTACCGGCAAA 2545 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| | ||||||||| ||| | || |||||||| ||||| ||| | | Sbjct 2544 GATGAGTCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 2485 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | |||| ||||| |||| ||||||||||| || ||||| || || || Sbjct 2484 ATCGATGGTGTCGGAGCTCTCGACCTCCAAAGTGATGGTTTTCCCAGTGAGGGTCTTGAC 2425 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 2424 GAAGATCTGCAT 2413 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||| | |||| | || || | |||||| || || || Sbjct 2376 TTCCTTCTGGATGTTGTAGTCGGCTAAAGTACGGCCATCTTCGAGCTGCTTTCCGGCAAA 2317 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||||| |||||||| ||| | || |||||||| ||||| ||| | | Sbjct 2316 GATGAGCCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 2257 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | |||| || || || | ||||| || || || ||||| || || || Sbjct 2256 GTCGATTGTGTCGGAACTCTCAACCTCGAGAGTGATTGTCTTTCCAGTGAGGGTCTTAAC 2197 Query 34378 AAAGATCTGCATC 34390 ||||||||||||| Sbjct 2196 AAAGATCTGCATC 2184 >seq277754 Length=2847 Score = 84.2 bits (92), Expect = 1e-11 Identities = 132/189 (70%), Gaps = 9/189 (5%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || ||||||||||||| || | |||| || | || || || ||||| Sbjct 2768 TCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCCTCGAGTTGTTTTCCGGCGAAG 2709 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 |||||||| |||||||| || | || |||||||||||| || | | ||| Sbjct 2708 ATGAGCCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCGGCTTTC--ACGTTGTAG---- 2655 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 || | |||| || || || |||| ||| ||||| |||||||| || |||||||| Sbjct 2654 ---ATGGTGTCGGAGGACTCAACCTCCAGCGTTATGGTCTTGCCGGTTAGGGTTTTCACG 2598 Query 34379 AAGATCTGC 34387 ||||||||| Sbjct 2597 AAGATCTGC 2589 >seq156932 Length=6713 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 || || || ||||| | || || ||||| | ||| || ||||| || ||||| || Sbjct 3526 AACCCACCACGCAGACGAAGAACAAGGTGAAGAGTCGACTCCTTCTGGATATTGTAATCC 3585 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 | || ||| | || ||||||||||| |||||||| || | || ||||||||| Sbjct 3586 GCAAGAGTACGACCATCCTCCAACTGCTTCCCTGCGAATATCAACCTCTGCTGGTCTGGT 3645 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | | ||||| || |||||| ||| | || | | || | ||| | || Sbjct 3646 GGAATCCCTTCCTTATCCTGAATCTTTGCCTTCACATTGTCAATGGTATCCGAGCTCTCC 3705 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 || |||| ||||| || || ||||| | ||| || || || ||||||||| ||| Sbjct 3706 ACCTCCAAGGTGATCGTCTTCCCGGTTAAAGTCTTGACGAAAATCTGCATCCCTC 3760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321245397959360