Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq284040 134 9e-27
seq259261 125 5e-24
seq62239 122 6e-23
seq268484 116 2e-21
seq25275 105 4e-18
seq243249 100 2e-16
seq228143 93.3 3e-14
seq277754 84.2 1e-11
seq156932 82.4 5e-11
>seq284040
Length=2693
Score = 134 bits (148), Expect = 9e-27
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|||||||| |||| |||||||| || | ||| ||| ||||| ||||||||||| |
Sbjct 529 CCGCCGCGAAGCCGTAGCACCAGATGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGCT 470
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| | | |||| |||| |||||| || ||||| ||||| |||||||| ||| ||
Sbjct 469 AGGGTTCTGCCGTCCTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGA 410
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | |||||||| ||||| ||| | || | | |||| ||||| |||||
Sbjct 409 ATTCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTATCGGAGCTCTCGACC 350
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| ||||| ||||||||||| || ||||| || |||||||||||
Sbjct 349 TCCAGAGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 303
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|||||||| || | || || ||||| | ||| || ||||| ||||||||||| |
Sbjct 757 CCGCCGCGGAGGCGTAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCT 698
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| | | |||| |||| |||||| || ||||| ||||| |||||||| || ||
Sbjct 697 AGGGTTCTGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCCGGAGGA 638
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | |||||||| ||||| ||| | | | |||| ||||| |||||
Sbjct 637 ATTCCTTCCTTGTCCTGGATCTTCGCCTTGACGTTATCGATCGTATCGGAGCTCTCGACC 578
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|||| |||||||| |||||||| || ||||| || ||||||||||||
Sbjct 577 TCCAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCATC 530
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || | || || ||| ||||| || || || || ||||| |||||||| |||| |
Sbjct 985 CCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCC 926
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| | |||| || | ||||||||| ||||| || | ||||||||||| ||
Sbjct 925 AAAGTCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGG 866
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | |||||||| ||||| ||| | | | |||| |||| ||| ||
Sbjct 865 ATTCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCACC 806
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|||| |||||| ||||| ||||| | || ||||| ||||||||||||
Sbjct 805 TCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCATC 758
>seq259261
Length=7884
Score = 125 bits (138), Expect = 5e-24
Identities = 173/238 (73%), Gaps = 3/238 (1%)
Strand=Plus/Minus
Query 34153 TTCGTCGAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTT 34212
||| ||| | || ||||| || | ||||||||||| | || || ||||| |||||
Sbjct 2611 TTCTTCGCA-CCACCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTT 2553
Query 34213 GTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTG 34272
|||||||| || | | |||| || | ||| || || ||||| ||||| ||||||||
Sbjct 2552 GTAGTCGGCTAGGGTCCTGCCGTCCTCGAGCTGTTTCCCGGCGAAGATGAGGCGCTGCTG 2493
Query 34273 GTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGG 34331
||| | |||| | || |||||||| ||||| ||| | | | | |||| ||||
Sbjct 2492 GTCCGGCGGG-ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCGG 2434
Query 34332 TCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||||||| |||| |||||| || || || || || |||||||| |||||||||||
Sbjct 2433 AGGATTCGACCTCCAACGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 2376
>seq62239
Length=9780
Score = 122 bits (134), Expect = 6e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|||||||| || | || || ||||| | || || ||||| |||||||||||||
Sbjct 5331 CCGCCGCGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCT 5390
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281
|| | | |||| || | |||||| || ||||| ||||| || ||||||| || ||||
Sbjct 5391 AGGGTCCTGCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGG 5450
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || |||||||| ||||| ||| | || | | || | |||| ||||||||
Sbjct 5451 -ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGATTCGAC 5509
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| | || |||||||| ||||| || |||||||| ||||||||||||
Sbjct 5510 CTCTAGGGTTATGGTTTTCCCGGTTAGGGTTTTCACGAAGATCTGCATC 5558
>seq268484
Length=6331
Score = 116 bits (128), Expect = 2e-21
Identities = 146/195 (75%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||| ||||| ||||||||||||| || | | | |||| || | || || || |||||
Sbjct 936 TTCCTTCTGGATGTTGTAGTCGGCTAGGGGTCCGCCGTCCTCGAGCTATTTTCCGGCGAA 995
Query 34258 AATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGA 34315
||||| |||| |||||| |||||| | || |||||||| ||||| ||||| |
Sbjct 996 GATGAGGCGCTACTGGTCCGACGGG-ATGCCTTCCTTGTCTTGGATCTTG-GCTTTCACG 1053
Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375
| | | || | |||| || ||||| |||| |||||||| |||||||| || ||||||
Sbjct 1054 TTGTCGATGGTGTCGGAGGACTCGACCTCCAACGTGATGGCCTTGCCGGTTAGGGTTTTC 1113
Query 34376 ACAAAGATCTGCATC 34390
|| ||||||||||||
Sbjct 1114 ACGAAGATCTGCATC 1128
>seq25275
Length=8276
Score = 105 bits (116), Expect = 4e-18
Identities = 141/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| ||||| ||||||| || |||| |||| || | |||||| || || ||
Sbjct 4981 TCCTTCTGGATGTTATAGTCGGCAAGAGTACGGCCGTCCTCGAGCTGCTTTCCGGCAAAG 4922
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
|| || | ||||||||| ||| | | |||||||| || || ||| | | |
Sbjct 4921 ATCAGTCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTAGCCTTCACGTTG 4862
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| || | || | |||||| |||| ||||||||||||||||||||| ||||| |||
Sbjct 4861 TCAATGGTGTCAGAGCTTTCGACCTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACA 4802
Query 34379 AAGATCTGCATCGCTC 34394
||||| |||||| |||
Sbjct 4801 AAGATTTGCATCCCTC 4786
Score = 89.7 bits (98), Expect = 3e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||| ||||| || || ||||||| ||| |||| | || || | |||||||||||| ||
Sbjct 5894 TTCCTTCTGGATATTATAGTCGGCAAGCGTACGGCCATCCTCAAGCTGCTTGCCTGCAAA 5835
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316
|| |||| ||||||||| || | | |||||| || ||| || ||||| | |
Sbjct 5834 GATCAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTATCCTGGATC-TTCGCTTTAACGT 5776
Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376
| | || | |||| ||||| |||| ||||| || || ||||| | || ||||
Sbjct 5775 TGTCAATGGTGTCGGAACTCTCGACTTCCAATGTGATAGTCTTCCCGGTTAAGGTCTTCA 5716
Query 34377 CAAAGATCTGCAT 34389
|||||||||||||
Sbjct 5715 CAAAGATCTGCAT 5703
>seq243249
Length=1014
Score = 100 bits (110), Expect = 2e-16
Identities = 138/190 (73%), Gaps = 11/190 (6%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| || || ||| ||||||||| || | | |||| || | ||| || || |||||
Sbjct 762 TCCTTTTGGATGCTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGTTTTCCGGCGAAG 821
Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317
|||||||| |||||||| | |||| | || |||||||||||| || | | |||||
Sbjct 822 ATGAGCCGTTGCTGGTCCGGCGGG-ATGCCTTCCTTGTCGGCTTTCACGT--TGTAGATG 878
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| | ||| || || || |||| ||| ||||| |||||||| |||||||||||
Sbjct 879 GTGT-------CGGAGGACTCAACCTCCAACGTTATGGTCTTGCCGGTTAGAGTTTTCAC 931
Query 34378 AAAGATCTGC 34387
||||||||||
Sbjct 932 AAAGATCTGC 941
>seq228143
Length=6931
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| ||||||||||||| || ||| |||| |||| |||||| || ||||||
Sbjct 2831 TCCTTCTGGATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCCAGCTGCTTTCCGGCGAAA 2772
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
|| || | ||||||||| || | || || ||||| ||||| ||| | | |
Sbjct 2771 ATAAGTCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTG 2712
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| || | |||| ||| || || | |||||||| || ||||| | |||||||||
Sbjct 2711 TCAATGGTGTCGGAGCTTTCAACTTCTAATGTGATGGTCTTTCCGGTCAAGGTTTTCACA 2652
Query 34379 AAGATCTGCAT 34389
|| ||||||||
Sbjct 2651 AAAATCTGCAT 2641
Score = 86.0 bits (94), Expect = 4e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||| ||||| ||||||||||| | || ||| |||| || | ||| || || || ||
Sbjct 2604 TTCCTTCTGGATGTTGTAGTCTGCGAGGGTTCGGCCGTCCTCGAGCTGTTTACCGGCAAA 2545
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317
||||| | ||||||||| ||| | || |||||||| ||||| ||| | |
Sbjct 2544 GATGAGTCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 2485
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| || | |||| ||||| |||| ||||||||||| || ||||| || || ||
Sbjct 2484 ATCGATGGTGTCGGAGCTCTCGACCTCCAAAGTGATGGTTTTCCCAGTGAGGGTCTTGAC 2425
Query 34378 AAAGATCTGCAT 34389
|||||||||||
Sbjct 2424 GAAGATCTGCAT 2413
Score = 82.4 bits (90), Expect = 5e-11
Identities = 134/193 (69%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||| ||||| ||||||||||||| | |||| | || || | |||||| || || ||
Sbjct 2376 TTCCTTCTGGATGTTGTAGTCGGCTAAAGTACGGCCATCTTCGAGCTGCTTTCCGGCAAA 2317
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317
||||||| |||||||| ||| | || |||||||| ||||| ||| | |
Sbjct 2316 GATGAGCCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 2257
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| | || | |||| || || || | ||||| || || || ||||| || || ||
Sbjct 2256 GTCGATTGTGTCGGAACTCTCAACCTCGAGAGTGATTGTCTTTCCAGTGAGGGTCTTAAC 2197
Query 34378 AAAGATCTGCATC 34390
|||||||||||||
Sbjct 2196 AAAGATCTGCATC 2184
>seq277754
Length=2847
Score = 84.2 bits (92), Expect = 1e-11
Identities = 132/189 (70%), Gaps = 9/189 (5%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| || || ||||||||||||| || | |||| || | || || || |||||
Sbjct 2768 TCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCCTCGAGTTGTTTTCCGGCGAAG 2709
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
|||||||| |||||||| || | || |||||||||||| || | | |||
Sbjct 2708 ATGAGCCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCGGCTTTC--ACGTTGTAG---- 2655
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
|| | |||| || || || |||| ||| ||||| |||||||| || ||||||||
Sbjct 2654 ---ATGGTGTCGGAGGACTCAACCTCCAGCGTTATGGTCTTGCCGGTTAGGGTTTTCACG 2598
Query 34379 AAGATCTGC 34387
|||||||||
Sbjct 2597 AAGATCTGC 2589
>seq156932
Length=6713
Score = 82.4 bits (90), Expect = 5e-11
Identities = 159/235 (68%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219
|| || || ||||| | || || ||||| | ||| || ||||| || ||||| ||
Sbjct 3526 AACCCACCACGCAGACGAAGAACAAGGTGAAGAGTCGACTCCTTCTGGATATTGTAATCC 3585
Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279
| || ||| | || ||||||||||| |||||||| || | || |||||||||
Sbjct 3586 GCAAGAGTACGACCATCCTCCAACTGCTTCCCTGCGAATATCAACCTCTGCTGGTCTGGT 3645
Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339
|| | | ||||| || |||||| ||| | || | | || | ||| | ||
Sbjct 3646 GGAATCCCTTCCTTATCCTGAATCTTTGCCTTCACATTGTCAATGGTATCCGAGCTCTCC 3705
Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394
|| |||| ||||| || || ||||| | ||| || || || ||||||||| |||
Sbjct 3706 ACCTCCAAGGTGATCGTCTTCCCGGTTAAAGTCTTGACGAAAATCTGCATCCCTC 3760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 321245397959360
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