Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq25275 109 4e-19 seq156932 91.5 1e-13 >seq25275 Length=8276 Score = 109 bits (120), Expect = 4e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||| || | | |||||||| || ||| ||||||||| |||||||| ||| | Sbjct 5245 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCC 5186 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | |||| |||| || || || || ||||| || ||||||| ||| ||||| || || Sbjct 5185 AAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 5126 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| ||||| ||| || | | ||||| | ||| || Sbjct 5125 ATACCCTCCTTGTCTTGGATTTTCGCCTTCACGTTATCGATAGTGTCCGAGCTCTCGACT 5066 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 |||| || || || || || || || || || |||||||||||||| ||||| Sbjct 5065 TCCAACGTGATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCATACCGCCTC 5011 Score = 100 bits (110), Expect = 2e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||||| | |||||||| || || |||||||||||||||||||| Sbjct 5473 CCACCTCTCAATCGAAGCACCAAGTGAAGGGTTGATTCCTTCTGAATGTTGTAGTCTGCA 5414 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || || || || || ||||| || ||||| | |||||||| || || Sbjct 5413 AGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGG 5354 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||| || || ||||| ||| || | | | |||| | ||| || Sbjct 5353 ATTCCCTCTTTATCTTGGATTTTCGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAACT 5294 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 |||| || || ||||| || |||| ||||||||||||||| ||||| ||||| Sbjct 5293 TCCAGTGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAGATCTGCATACCGCCTC 5239 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||||| | ||||| || || || |||||||||||||||||||| Sbjct 5701 CCACCTCTCAATCGAAGAACCAAATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGCA 5642 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || || || || || || || |||| || ||| ||||| || || Sbjct 5641 AGCGTACGACCATCCTCGAGCTGCTTACCCGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 5582 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||| || ||| || ||| || | | | |||| | ||| ||| Sbjct 5581 ATACCCTCCTTATCTTGAATCTTAGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAACC 5522 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || ||||| || |||| |||||||||||||| ||||| Sbjct 5521 TCGAGAGTGATGGTCTTTCCGGTCAATGTCTTCACAAAGATCTGCAT 5475 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||| || | | |||||||| || || ||||||||| ||||| |||||| Sbjct 5017 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTTGACTCCTTCTGGATGTTATAGTCGGCA 4958 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || |||| || || || |||||||| || |||| | ||| ||||| || || Sbjct 4957 AGAGTACGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGA 4898 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| |||||||| |||||| ||| || | | | |||| | || ||| Sbjct 4897 ATACCTTCCTTGTCTTGAATTTTAGCCTTCACGTTGTCAATGGTGTCAGAGCTTTCGACC 4838 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || || ||||| || || || || |||||||||||||| Sbjct 4837 TCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 4791 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| ||||||| | |||||| ||||| || |||||||| || || |||||| Sbjct 5929 CCACCCCTCAATCGGAGTACCAAATGCAGAGTCGATTCCTTCTGGATATTATAGTCGGCA 5870 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || || || || || || || || |||| || ||| ||||| || || Sbjct 5869 AGCGTACGGCCATCCTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 5810 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCAC-GCTGTCCCCACCCTCCAC 45288 | ||||||||| ||| || || |||| | || | || | |||| || ||| || Sbjct 5809 ATACCCTCCTTATCCTGGATCTTC-GCTTTAACGTTGTCAATGGTGTCGGAACTCTCGAC 5751 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| || || | |||||||||||||| ||||| Sbjct 5750 TTCCAATGTGATAGTCTTCCCGGTTAAGGTCTTCACAAAGATCTGCAT 5703 >seq156932 Length=6713 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| ||||||||||| || || |||| || Sbjct 4003 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCCGCAAGAGTACGGCCGTCCTCG 4062 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 |||||||| |||||||| ||||| ||||| ||||| || || | || |||||||| Sbjct 4063 AGTTGTTTACCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGG 4122 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | || || || | || || || ||| Sbjct 4123 ATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTTTCTACTTCAAGAGTGATGGTTTTG 4182 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| ||||| || |||||||||||| Sbjct 4183 CCGGTCAAGGTCTTGACGAAGATTTGCATG 4212 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| || ||||| || || ||| | || |||| || || || ||||| Sbjct 3564 CTCCTTCTGGATATTGTAATCCGCAAGAGTACGACCATCCTCCAACTGCTTCCCTGCGAA 3623 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||||||| ||| ||||| || || | || ||||| ||| ||| ||| ||| || Sbjct 3624 TATCAACCTCTGCTGGTCTGGTGGAATCCCTTCCTTATCCTGAATCTTTGCCTTCACATT 3683 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | ||| | ||||||||||| ||| |||||||| || || | |||||| || Sbjct 3684 GTCAATGGTATCCGAGCTCTCCACCTCCAAGGTGATCGTCTTCCCGGTTAAAGTCTTGAC 3743 Query 45325 AAAGATTTGCAT 45336 || || ||||| Sbjct 3744 GAAAATCTGCAT 3755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 392841502352026