Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq294625 221 1e-52 seq293582 217 1e-51 seq284040 122 8e-23 seq259261 100 3e-16 seq62239 89.7 5e-13 seq156932 84.2 2e-11 >seq294625 Length=4757 Score = 221 bits (244), Expect = 1e-52 Identities = 594/893 (67%), Gaps = 18/893 (2%) Strand=Plus/Minus Query 57531 CCCCG-TAGATT-TGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAA 57588 ||||| |||||| ||| ||||| || ||| || || | |||||| | |||||||| | Sbjct 4671 CCCCGATAGATTCTGT-ATGTTCCCTATTCGCTACCCTCAGATTTGGGAAATGTACAAGA 4613 Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648 |||| ||||| || || ||||||| ||| || || || |||| |||| | || | | Sbjct 4612 AGGCCGAAGCCTCCTTCTGGACCGCCGAGGAGGTCGATTTGTCACAGGACCAACGCCACT 4553 Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCG 57708 |||| ||||||| || || || | || || | ||||| | || || ||||||| Sbjct 4552 GGGACTCCCTCACCGACGGCGAACGACACTTCATCACTCACGTCCTCGCCTTCTTCGCCG 4493 Query 57709 CATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGA 57768 | ||||| || || || || || | | || ||| || |||| || ||||| Sbjct 4492 CCTCCGACGGAATCGTATTGGAAAACCTAGCCGGAAGGTTCATGAAAGAGGTTCAAGTCG 4433 Query 57769 CGGAGGCGAGATGCTTT-TACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATG 57827 | ||||| | |||||| |||||||| || | || || || ||| | || || || ||| Sbjct 4432 CCGAGGCTCG-TGCTTTCTACGGATTCCAGATCGCAATCGAGAACATTCACTCCGAGATG 4374 Query 57828 TATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAAC 57887 || | ||| |||| || ||| | |||||| | |||| || || ||||| | Sbjct 4373 TACAGCTTGCTCCTCGAGACCTACATCAAGGACTCCAACGACAAGATGAGGCTGTTTCGC 4314 Query 57888 GCGATCGAAACAATGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAA 57946 || | || || || || ||| || |||||||| | ||| | || | ||||| | Sbjct 4313 GCTGTGGAGACCATTCCTTGCG-TCCAGAAGAAGGCCAATTGGGCGATGAGGTGGATCGA 4255 Query 57947 AAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATT 58006 || | || |||| || || | | || || ||||| ||||||||| ||||| Sbjct 4254 TGGCTC---GGAGTCGTTTGCGGAACGTATCATTGCCTTCGCTTGCGTCGAAGGGATATT 4198 Query 58007 CTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCC 58065 ||| ||||| ||||| |||| | || || ||| ||||||||||||| ||||||| || Sbjct 4197 CTTCTCGGGAAGCTTCTGCG-CTATCTTCTGGTTGAAGAAACGCGGTTTGATGCCTGGAT 4139 Query 58066 TGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCC 58125 |||| || |||||||||||| || || ||||| || | || ||||| || ||| Sbjct 4138 TGACCTTCTCCAACGAGTTGATTTCACGAGACGAAGGATTACACTGCGATTTCGCCTGCT 4079 Query 58126 TAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCG 58185 | | ||| | | || || || ||| || | ||| || | ||| Sbjct 4078 TGCTCTACGGTTTGCTGAACACGAAGGTGAGTGAGGAGCGAGTTAAGGAAATCGTTTCCG 4019 Query 58186 AGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTA 58245 | |||| | |||||| | ||||| ||| ||| || ||||| || | | || | Sbjct 4018 ACTCGGTGGAGATCGAGAGAGAGTTCGTCTGCGACGCGTTACCGTGCGCTCTCGTGGGGA 3959 Query 58246 TGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAAC 58305 |||| ||| | ||| |||||||| ||||| ||||| ||||| |||||| | | Sbjct 3958 TGAATGGTGACCTCATGAGTAAGTACATCGAGTTCGTTGCTGACAGGCTTTTGGTGTCAT 3899 Query 58306 TGATTGGA-GAGCGTCAT--TACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCT 58362 || ||| | | | || |||||| | | ||||| || |||| ||| | ||||| | Sbjct 3898 TG---GGATGTGGGAAATTGTACAACGCACAGAATCCATTCGATTGGATGGAGCTGATTT 3842 Query 58363 CGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAA 58415 || | | || ||||| || || ||||| |||| |||| | || ||||| ||| Sbjct 3841 CGTTACAAGGGAAGACGAATTTCTTCGAGAAAAGAGTTGGAGAGTATCAGAAA 3789 >seq293582 Length=2029 Score = 217 bits (240), Expect = 1e-51 Identities = 593/898 (66%), Gaps = 25/898 (3%) Strand=Plus/Minus Query 57528 AATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAA 57587 |||||| | |||| |||||| || || |||| || | || ||| | ||||||||| Sbjct 1889 AATCCCGATCGATTCTGCATGTTCCCAATCAAATACCCCCAAATCTGGGAAATGTACAAA 1830 Query 57588 AAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGAT 57647 || || ||||| ||||||||||| | |||||||| ||||| || |||| | | || | Sbjct 1829 AAAGCCGAAGCCTCGTTTTGGACGGCTGAAGAAGTCGACCTATCGCAGGACCAGCGCCAA 1770 Query 57648 TGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCC 57707 ||||| || | | || ||| | | || || | ||||| | || || || ||| Sbjct 1769 TGGGAGTCGTTGACCGACGGCGAGCGCCACTTCATCACCCACGTCCTCGCCTTCTTTGCC 1710 Query 57708 GCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTG 57767 || || || || || || |||||| | | || | | || | || || || || Sbjct 1709 GCCTCGGACGGCATCGTCCTGGAGAATCTTGCCGGACGCTTCATGAAGGAGGTCCAGGTC 1650 Query 57768 ACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATG 57827 |||||||| | ||| ||||| || || | ||||| || ||| | || || || ||| Sbjct 1649 GCGGAGGCGCGCGCCTTCTACGGGTTCCAGATCGCCATCGAGAACATCCACTCGGAGATG 1590 Query 57828 TATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAAC 57887 || || ||| | || | ||| | |||||| | ||||||| | |||||| || Sbjct 1589 TACAGCCTCCTCCTGGAGTCCTACATCAAGGACTCCAACGAGAAGAACCGGCTGTTCCAC 1530 Query 57888 GCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA 57947 || | || || || ||| ||| |||||| ||||| | || ||||| | Sbjct 1529 GCCGTGGAGACCATCCCCTGCATCCAGCGGAAGGCCCAGTGGGCCCTCCGCTGGATCGAC 1470 Query 57948 AGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTC 58007 | || | || ||||| ||| || | |||| |||||| ||||| || || ||| Sbjct 1469 GGGTCCGAGTCC---TTCGCGGAGCGGATCGTCGCCTTCGCCTGTGTCGAGGGCATCTTC 1413 Query 58008 TTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCT 58066 || || || ||||| |||| || | || ||| | ||||| |||||||||||||| ||||| Sbjct 1412 TTCTCCGGAAGCTTCTGCGCCA-TCTTCTGGCTCAAGAAGCGCGGCCTGATGCCGGGCCT 1354 Query 58067 GACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 ||||| |||||| ||||| ||| | ||||| || || || ||||| |||||| | Sbjct 1353 AACGTTCTCCAACGAATTGATCTCGAGGGACGAAGGCCTGCACTGCGATTTCGCGTGCTT 1294 Query 58127 AATGTACTCTCACATTGT----CAATAAACCGACGCG-GGATCGCATCTTGGACATTATC 58181 || ||| | |||| || || | || ||| ||| || | | | ||| | Sbjct 1293 GATCTACGGT----TTGTTGAACATGAAGCTGA-GCGAGGAGCGGGTTAAGAAGATTGTG 1239 Query 58182 ACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCG-GTGGCCATGCT 58240 | || ||||| | |||||| | |||||||| ||| || || ||| |||| | || | Sbjct 1238 GCGGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGTGGTC-TGGT 1180 Query 58241 CGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCT 58300 || |||||| ||| ||||| | ||| || ||||| || || || | | ||| | Sbjct 1179 GGGGATGAACGGCGATCTGATGAGCACGTATATCGAGTTCGTGGCGGATCGGTTGTTGGT 1120 Query 58301 CGAACTGATTGGAGAGCGTCA----TTACAACACGAAAAATCCGTTTGATTTTATGAATC 58356 | |||| | || | ||||| | | ||||||||||||| ||| | | Sbjct 1119 GG----CGTTGGGGTACGGGAAGATGTACAAGGTGCAGAATCCGTTTGATTGGATGGAGC 1064 Query 58357 TGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414 |||| ||| | |||| ||||| ||||| ||||| || | ||| | || || || || Sbjct 1063 TGATTTCGTTGCAGGGGAAGACGAACTTCTTCGAGAAGAGGGTTGGGGAGTACCAGAA 1006 >seq284040 Length=2693 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || ||||||||||| | || || ||| ||| Sbjct 759 ATGCAGATCTTCGTGAAGACGTTGACCGGAAAAACGATCACGTTGGAGGTGGAAAGCTCC 818 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || |||||||||||| | || || |||||| Sbjct 819 GACACGATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAAGGAATCCCACCGGACCAG 878 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || ||||| ||||| ||| | |||||| | |||| || |||||| ||| Sbjct 879 CAGCGTTTGATCTTCGCCGGCAAGCAGCTCGAAGACGGAAGGACTTTGGCCGATTACAAC 938 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || || | |||||||| || | ||||||| || Sbjct 939 ATCCAGAAGGAGTCCACGTTGCATCTGGTTCTGCGGTTGAGGGGAGG 985 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || || |||||||| ||||| | || || || ||| Sbjct 303 ATGCAGATCTTCGTCAAAACCCTAACCGGCAAAACAATCACTCTGGAGGTCGAGAGCTCC 362 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| || || |||||||||||| | || ||||| ||| Sbjct 363 GATACGATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCCGATCAG 422 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||||| || || ||||| || || ||| |||| ||| | || | ||| || || || Sbjct 423 CAGCGCCTCATCTTCGCCGGAAAGCAGCTGGAGGACGGCAGAACCCT-AGCGGACTACAA 481 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || |||||||||||||||||||| || Sbjct 482 CATCCAGAAGGAATCGACTCTTCATCTGGTGCT 514 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || || ||||| || ||||| | || || || ||| Sbjct 531 ATGCAGATCTTCGTCAAAACCCTAACCGGCAAGACCATCACTCTGGAGGTCGAGAGCTCC 590 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| || || |||||||||||| | || || || ||| Sbjct 591 GATACGATCGATAACGTCAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCGGATCAG 650 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 |||||||| || ||||| || || ||| |||| ||| | || | ||| || || || Sbjct 651 CAGCGTCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGCAGAACCCT-AGCGGACTACAA 709 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || |||||||| || || || || Sbjct 710 CATCCAGAAGGAGTCGACTCTCCACCTCGTTCT 742 >seq259261 Length=7884 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || |||||||| | || || ||| | Sbjct 2373 AAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACGTTGGAGGTCGAATCC 2432 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | || || | || ||||||||||||| | ||||| ||| Sbjct 2433 TCCGACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCGGAC 2492 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||| || |||||| | || ||| | ||| | ||| || Sbjct 2493 CAGCAGCGCCTCATCTTCGCCGGGAAACAGCTCGAGGACGGCAGGACCCTAGCCGACTAC 2552 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || || ||||| || Sbjct 2553 AACATCCAGAAGGAGTCCACCCTCCACCTGGTGCT 2587 >seq62239 Length=9780 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| || ||||| || || || || || ||||| || ||| | || || ||| Sbjct 5562 CAAAGATGCAGATCTTCGTGAAAACCCTAACCGGGAAAACCATAACCCTAGAGGTCGAAT 5503 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | ||||| | || |||||||||||| | ||||| | Sbjct 5502 CCTCCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCGCCGG 5443 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||| || || || ||||| || || ||| | || ||| | ||| | ||| | Sbjct 5442 ACCAGCAACGCCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGCAGGACCCTAGCCGACT 5383 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || || || || || || || || || || Sbjct 5382 ACAACATCCAGAAGGAGTCCACCCTCCACCTCGTCCT 5346 >seq156932 Length=6713 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||| | || || || ||||||||| | || || || || Sbjct 3755 ATGCAGATTTTCGTCAAGACTTTAACCGGGAAGACGATCACCTTGGAGGTGGAGAGCTCG 3696 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || || || ||| | ||| |||||||| | || || ||||| Sbjct 3695 GATACCATTGACAATGTGAAGGCAAAGATTCA-GGATAAGGAAGGGATTCCACCAGACCA 3637 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | |||||||| || || |||||||| || | ||| | ||||| || Sbjct 3636 GCAGAGGTTGATATTCGCAGGGAAGCAGTTGGAGGATGGTCGTACTCTTGCGGATTACAA 3577 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || ||||||||||| || || ||| | ||| | || || Sbjct 3576 TATCCAGAAGGAGTCGACTCTTCACCTTGTTCTTCGTCTGCGTGGTGG 3529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443181478655520