Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq294625 221 1e-52
seq293582 217 1e-51
seq284040 122 8e-23
seq259261 100 3e-16
seq62239 89.7 5e-13
seq156932 84.2 2e-11
>seq294625
Length=4757
Score = 221 bits (244), Expect = 1e-52
Identities = 594/893 (67%), Gaps = 18/893 (2%)
Strand=Plus/Minus
Query 57531 CCCCG-TAGATT-TGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAA 57588
||||| |||||| ||| ||||| || ||| || || | |||||| | |||||||| |
Sbjct 4671 CCCCGATAGATTCTGT-ATGTTCCCTATTCGCTACCCTCAGATTTGGGAAATGTACAAGA 4613
Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648
|||| ||||| || || ||||||| ||| || || || |||| |||| | || | |
Sbjct 4612 AGGCCGAAGCCTCCTTCTGGACCGCCGAGGAGGTCGATTTGTCACAGGACCAACGCCACT 4553
Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCG 57708
|||| ||||||| || || || | || || | ||||| | || || |||||||
Sbjct 4552 GGGACTCCCTCACCGACGGCGAACGACACTTCATCACTCACGTCCTCGCCTTCTTCGCCG 4493
Query 57709 CATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGA 57768
| ||||| || || || || || | | || ||| || |||| || |||||
Sbjct 4492 CCTCCGACGGAATCGTATTGGAAAACCTAGCCGGAAGGTTCATGAAAGAGGTTCAAGTCG 4433
Query 57769 CGGAGGCGAGATGCTTT-TACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATG 57827
| ||||| | |||||| |||||||| || | || || || ||| | || || || |||
Sbjct 4432 CCGAGGCTCG-TGCTTTCTACGGATTCCAGATCGCAATCGAGAACATTCACTCCGAGATG 4374
Query 57828 TATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAAC 57887
|| | ||| |||| || ||| | |||||| | |||| || || ||||| |
Sbjct 4373 TACAGCTTGCTCCTCGAGACCTACATCAAGGACTCCAACGACAAGATGAGGCTGTTTCGC 4314
Query 57888 GCGATCGAAACAATGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAA 57946
|| | || || || || ||| || |||||||| | ||| | || | ||||| |
Sbjct 4313 GCTGTGGAGACCATTCCTTGCG-TCCAGAAGAAGGCCAATTGGGCGATGAGGTGGATCGA 4255
Query 57947 AAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATT 58006
|| | || |||| || || | | || || ||||| ||||||||| |||||
Sbjct 4254 TGGCTC---GGAGTCGTTTGCGGAACGTATCATTGCCTTCGCTTGCGTCGAAGGGATATT 4198
Query 58007 CTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCC 58065
||| ||||| ||||| |||| | || || ||| ||||||||||||| ||||||| ||
Sbjct 4197 CTTCTCGGGAAGCTTCTGCG-CTATCTTCTGGTTGAAGAAACGCGGTTTGATGCCTGGAT 4139
Query 58066 TGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCC 58125
|||| || |||||||||||| || || ||||| || | || ||||| || |||
Sbjct 4138 TGACCTTCTCCAACGAGTTGATTTCACGAGACGAAGGATTACACTGCGATTTCGCCTGCT 4079
Query 58126 TAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCG 58185
| | ||| | | || || || ||| || | ||| || | |||
Sbjct 4078 TGCTCTACGGTTTGCTGAACACGAAGGTGAGTGAGGAGCGAGTTAAGGAAATCGTTTCCG 4019
Query 58186 AGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTA 58245
| |||| | |||||| | ||||| ||| ||| || ||||| || | | || |
Sbjct 4018 ACTCGGTGGAGATCGAGAGAGAGTTCGTCTGCGACGCGTTACCGTGCGCTCTCGTGGGGA 3959
Query 58246 TGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAAC 58305
|||| ||| | ||| |||||||| ||||| ||||| ||||| |||||| | |
Sbjct 3958 TGAATGGTGACCTCATGAGTAAGTACATCGAGTTCGTTGCTGACAGGCTTTTGGTGTCAT 3899
Query 58306 TGATTGGA-GAGCGTCAT--TACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCT 58362
|| ||| | | | || |||||| | | ||||| || |||| ||| | ||||| |
Sbjct 3898 TG---GGATGTGGGAAATTGTACAACGCACAGAATCCATTCGATTGGATGGAGCTGATTT 3842
Query 58363 CGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAA 58415
|| | | || ||||| || || ||||| |||| |||| | || ||||| |||
Sbjct 3841 CGTTACAAGGGAAGACGAATTTCTTCGAGAAAAGAGTTGGAGAGTATCAGAAA 3789
>seq293582
Length=2029
Score = 217 bits (240), Expect = 1e-51
Identities = 593/898 (66%), Gaps = 25/898 (3%)
Strand=Plus/Minus
Query 57528 AATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAA 57587
|||||| | |||| |||||| || || |||| || | || ||| | |||||||||
Sbjct 1889 AATCCCGATCGATTCTGCATGTTCCCAATCAAATACCCCCAAATCTGGGAAATGTACAAA 1830
Query 57588 AAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGAT 57647
|| || ||||| ||||||||||| | |||||||| ||||| || |||| | | || |
Sbjct 1829 AAAGCCGAAGCCTCGTTTTGGACGGCTGAAGAAGTCGACCTATCGCAGGACCAGCGCCAA 1770
Query 57648 TGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCC 57707
||||| || | | || ||| | | || || | ||||| | || || || |||
Sbjct 1769 TGGGAGTCGTTGACCGACGGCGAGCGCCACTTCATCACCCACGTCCTCGCCTTCTTTGCC 1710
Query 57708 GCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTG 57767
|| || || || || || |||||| | | || | | || | || || || ||
Sbjct 1709 GCCTCGGACGGCATCGTCCTGGAGAATCTTGCCGGACGCTTCATGAAGGAGGTCCAGGTC 1650
Query 57768 ACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATG 57827
|||||||| | ||| ||||| || || | ||||| || ||| | || || || |||
Sbjct 1649 GCGGAGGCGCGCGCCTTCTACGGGTTCCAGATCGCCATCGAGAACATCCACTCGGAGATG 1590
Query 57828 TATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAAC 57887
|| || ||| | || | ||| | |||||| | ||||||| | |||||| ||
Sbjct 1589 TACAGCCTCCTCCTGGAGTCCTACATCAAGGACTCCAACGAGAAGAACCGGCTGTTCCAC 1530
Query 57888 GCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA 57947
|| | || || || ||| ||| |||||| ||||| | || ||||| |
Sbjct 1529 GCCGTGGAGACCATCCCCTGCATCCAGCGGAAGGCCCAGTGGGCCCTCCGCTGGATCGAC 1470
Query 57948 AGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTC 58007
| || | || ||||| ||| || | |||| |||||| ||||| || || |||
Sbjct 1469 GGGTCCGAGTCC---TTCGCGGAGCGGATCGTCGCCTTCGCCTGTGTCGAGGGCATCTTC 1413
Query 58008 TTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCT 58066
|| || || ||||| |||| || | || ||| | ||||| |||||||||||||| |||||
Sbjct 1412 TTCTCCGGAAGCTTCTGCGCCA-TCTTCTGGCTCAAGAAGCGCGGCCTGATGCCGGGCCT 1354
Query 58067 GACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126
||||| |||||| ||||| ||| | ||||| || || || ||||| |||||| |
Sbjct 1353 AACGTTCTCCAACGAATTGATCTCGAGGGACGAAGGCCTGCACTGCGATTTCGCGTGCTT 1294
Query 58127 AATGTACTCTCACATTGT----CAATAAACCGACGCG-GGATCGCATCTTGGACATTATC 58181
|| ||| | |||| || || | || ||| ||| || | | | ||| |
Sbjct 1293 GATCTACGGT----TTGTTGAACATGAAGCTGA-GCGAGGAGCGGGTTAAGAAGATTGTG 1239
Query 58182 ACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCG-GTGGCCATGCT 58240
| || ||||| | |||||| | |||||||| ||| || || ||| |||| | || |
Sbjct 1238 GCGGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGTGGTC-TGGT 1180
Query 58241 CGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCT 58300
|| |||||| ||| ||||| | ||| || ||||| || || || | | ||| |
Sbjct 1179 GGGGATGAACGGCGATCTGATGAGCACGTATATCGAGTTCGTGGCGGATCGGTTGTTGGT 1120
Query 58301 CGAACTGATTGGAGAGCGTCA----TTACAACACGAAAAATCCGTTTGATTTTATGAATC 58356
| |||| | || | ||||| | | ||||||||||||| ||| | |
Sbjct 1119 GG----CGTTGGGGTACGGGAAGATGTACAAGGTGCAGAATCCGTTTGATTGGATGGAGC 1064
Query 58357 TGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414
|||| ||| | |||| ||||| ||||| ||||| || | ||| | || || || ||
Sbjct 1063 TGATTTCGTTGCAGGGGAAGACGAACTTCTTCGAGAAGAGGGTTGGGGAGTACCAGAA 1006
>seq284040
Length=2693
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| |||| || ||||||||||| | || || ||| |||
Sbjct 759 ATGCAGATCTTCGTGAAGACGTTGACCGGAAAAACGATCACGTTGGAGGTGGAAAGCTCC 818
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || || || |||||||||||| | || || ||||||
Sbjct 819 GACACGATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAAGGAATCCCACCGGACCAG 878
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||| | || ||||| ||||| ||| | |||||| | |||| || |||||| |||
Sbjct 879 CAGCGTTTGATCTTCGCCGGCAAGCAGCTCGAAGACGGAAGGACTTTGGCCGATTACAAC 938
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| || || || || || | |||||||| || | ||||||| ||
Sbjct 939 ATCCAGAAGGAGTCCACGTTGCATCTGGTTCTGCGGTTGAGGGGAGG 985
Score = 107 bits (118), Expect = 2e-18
Identities = 153/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| || || || || |||||||| ||||| | || || || |||
Sbjct 303 ATGCAGATCTTCGTCAAAACCCTAACCGGCAAAACAATCACTCTGGAGGTCGAGAGCTCC 362
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||| | ||||| || || |||||||||||| | || ||||| |||
Sbjct 363 GATACGATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCCGATCAG 422
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371
||||| || || ||||| || || ||| |||| ||| | || | ||| || || ||
Sbjct 423 CAGCGCCTCATCTTCGCCGGAAAGCAGCTGGAGGACGGCAGAACCCT-AGCGGACTACAA 481
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || |||||||||||||||||||| ||
Sbjct 482 CATCCAGAAGGAATCGACTCTTCATCTGGTGCT 514
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| || || || || ||||| || ||||| | || || || |||
Sbjct 531 ATGCAGATCTTCGTCAAAACCCTAACCGGCAAGACCATCACTCTGGAGGTCGAGAGCTCC 590
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||| | ||||| || || |||||||||||| | || || || |||
Sbjct 591 GATACGATCGATAACGTCAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCGGATCAG 650
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371
|||||||| || ||||| || || ||| |||| ||| | || | ||| || || ||
Sbjct 651 CAGCGTCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGCAGAACCCT-AGCGGACTACAA 709
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || |||||||| || || || ||
Sbjct 710 CATCCAGAAGGAGTCGACTCTCCACCTCGTTCT 742
>seq259261
Length=7884
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| || ||||| || || || || || || |||||||| | || || ||| |
Sbjct 2373 AAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACGTTGGAGGTCGAATCC 2432
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||||||| |||| | || || | || ||||||||||||| | ||||| |||
Sbjct 2433 TCCGACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCGGAC 2492
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|||||||| || || ||||| || |||||| | || ||| | ||| | ||| ||
Sbjct 2493 CAGCAGCGCCTCATCTTCGCCGGGAAACAGCTCGAGGACGGCAGGACCCTAGCCGACTAC 2552
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || || || || || || ||||| ||
Sbjct 2553 AACATCCAGAAGGAGTCCACCCTCCACCTGGTGCT 2587
>seq62239
Length=9780
Score = 89.7 bits (98), Expect = 5e-13
Identities = 150/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
|||| ||||| || ||||| || || || || || ||||| || ||| | || || |||
Sbjct 5562 CAAAGATGCAGATCTTCGTGAAAACCCTAACCGGGAAAACCATAACCCTAGAGGTCGAAT 5503
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| ||||||| |||| | ||||| | || |||||||||||| | ||||| |
Sbjct 5502 CCTCCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCGCCGG 5443
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
||||||| || || || ||||| || || ||| | || ||| | ||| | ||| |
Sbjct 5442 ACCAGCAACGCCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGCAGGACCCTAGCCGACT 5383
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
| ||||| || || || || || || || || || ||
Sbjct 5382 ACAACATCCAGAAGGAGTCCACCCTCCACCTCGTCCT 5346
>seq156932
Length=6713
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| |||||| | || || || ||||||||| | || || || ||
Sbjct 3755 ATGCAGATTTTCGTCAAGACTTTAACCGGGAAGACGATCACCTTGGAGGTGGAGAGCTCG 3696
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | || | || || || ||| | ||| |||||||| | || || |||||
Sbjct 3695 GATACCATTGACAATGTGAAGGCAAAGATTCA-GGATAAGGAAGGGATTCCACCAGACCA 3637
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | | |||||||| || || |||||||| || | ||| | ||||| ||
Sbjct 3636 GCAGAGGTTGATATTCGCAGGGAAGCAGTTGGAGGATGGTCGTACTCTTGCGGATTACAA 3577
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| || || || ||||||||||| || || ||| | ||| | || ||
Sbjct 3576 TATCCAGAAGGAGTCGACTCTTCACCTTGTTCTTCGTCTGCGTGGTGG 3529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 443181478655520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |