Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq293582 118 1e-21 seq294625 114 2e-20 seq161111 104 3e-17 seq180108 102 1e-16 >seq293582 Length=2029 Score = 118 bits (130), Expect = 1e-21 Identities = 402/620 (65%), Gaps = 6/620 (1%) Strand=Plus/Plus Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 ||||| || ||||||||||||||||| || ||||| || || |||||||| || ||| Sbjct 1291 ATCAAGCACGCGAAATCGCAGTGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAAC 1350 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 || || || ||||| ||||| ||||| || ||||| || |||| ||| |||||| Sbjct 1351 GTTAGGCCCGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTTCCGGAG 1410 Query 33696 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA 33755 |||||||| || || || || ||||| | | || | |||| | | | | | | Sbjct 1411 AAGAAGATGCCCTCGACACAGGCGAAGGCGACGA-TC-CGCTCCGCGAAGGACTCGGACC 1468 Query 33756 TGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 || ||||| | ||||| | ||||||| | | || || || || || | || Sbjct 1469 CGTCGATCCAGCGGAGGGCCCACTGGGCCTTCCGCTGGATGCAGGGGATGGTCTCCACGG 1528 Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873 | | || || ||| || || || || || | || | || | | || || | Sbjct 1529 CGTGGAACAGCCGGTTCTTCTCGTTGGAGTCCTTGATGTAGGACTCCAGGAGGAGGCTGT 1588 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 |||| ||||| || ||||| || ||||| ||||| || |||||||| | ||||| | Sbjct 1589 ACATCTCCGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCCG 1648 Query 33934 TAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993 | ||| || || | || ||| | || | ||| || || || || || || Sbjct 1649 CGACCTGGACCTCCTTCATGAAGCGTCCGGCAAGATTCTCCAGGACGATGCCGTCCGAGG 1708 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 34053 | ||||| || || | || || | || || | ||| | | | | | ||| Sbjct 1709 CGGCAAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCG-CCGTCGGTCAACGACTCC 1767 Query 34054 AATCATTGAT-ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 34112 || | | || | |||| || |||||||| | |||||||| || || || || Sbjct 1768 CATTGGCGCTGGTCCTGCGATAGGTCGACTTCTTCAGCCGTCCAAAACGAGGCTTCGGCT 1827 Query 34113 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 34172 ||||| ||||| | |||||| | | |||| ||||||||| || |||| || ||| Sbjct 1828 TTTTTGTACATTTCCCAGATTTGGGGGTATTTGATTGGGAACATGCAGAATCGATCGGGA 1887 Query 34173 TTTGGTGCAAGGATAGGTTC 34192 ||||| || |||| ||||| Sbjct 1888 TTTGGGGCGAGGAGGGGTTC 1907 >seq294625 Length=4757 Score = 114 bits (126), Expect = 2e-20 Identities = 400/619 (65%), Gaps = 8/619 (1%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 ||| || |||||||||||||| | || ||||||| ||| || ||||| || || || Sbjct 4077 CAAGCAGGCGAAATCGCAGTGTAATCCTTCGTCTCGTGAAATCAACTCGTTGGAGAAGGT 4136 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 | ||| ||||| | || || || || | ||| || || | ||| ||| || || Sbjct 4137 CAATCCAGGCATCAAACCGCGTTTCTTCAACCAGAAGATAGCGCAGAAGCTTCCCGAGAA 4196 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGCTGTCA 33755 ||| || ||||| || ||| |||||||| | | || || ||| | || | || Sbjct 4197 GAATATCCCTTCGACGCAAGCGAAGGCAATGATACGTTCCGCA-AACGACTCCG-AGCCA 4254 Query 33756 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 | |||||| | ||||||| ||||||||| | || ||||| || || || | || Sbjct 4255 TCGATCCACCTCATCGCCCAATTGGCCTTCTTCTGGACGCAAGGAATGGTCTCCACAGCG 4314 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 ||| || | || || || || || | || || |||| | | || ||| Sbjct 4315 CGAAACAGCCTCATCTTGTCGTTGGAGTCCTTGATGTAGGTCTCGAGGAGCAAGCTGTAC 4374 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 || || || |||||||| || || || ||||| |||||||||||| | |||||||| Sbjct 4375 ATCTCGGAGTGAATGTTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGAGCCTCGGCG 4434 Query 33936 ATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 | || || ||| | || | | | |||| ||||| || ||||| || ||| Sbjct 4435 ACTTGAACCTCTTTCATGAACCTTCCGGCTAGGTTTTCCAATACGATTCCGTCGGAGGCG 4494 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 34055 || || || || | || || | || || | | |||| | || || | ||| Sbjct 4495 GCGAAGAAGGCGAGGACGTGAGTGATGAAGTGTCGTTCGCCGTCGGTGAGGGAGTCCCAG 4554 Query 34056 T--CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | | ||| || | || | ||| || || || | ||||| || || || || |||| Sbjct 4555 TGGCGTTG--GTCCTGTGACAAATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCGGCCT 4612 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 34173 | || ||||| | ||| || | | | || | || ||||| ||| ||||||| || | Sbjct 4613 TCTTGTACATTTCCCAAATCTGAGGGTAGCGAATAGGGAACATACAGAATCTATCGGGGT 4672 Query 34174 TTGGTGCAAGGATAGGTTC 34192 | || ||||||| ||| || Sbjct 4673 TAGGAGCAAGGAGAGGCTC 4691 >seq161111 Length=12134 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 ||||| || || | || | ||| || | ||| | || | ||||||||||||||| || Sbjct 5271 CCTCCTTGGTCAACATAACGAGCTGTATCATTGAAGACACGCAACATTGGAATAATGCCA 5212 Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542 || ||| | ||||| || || || || | |||| | | ||| |||||| || || Sbjct 5211 TTGGATGTGCCATTTGTTCCACGTATGTAACTTCCAGTTGAACGGATATTATGAACAGAG 5152 Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 | ||| ||||| ||||| ||| ||| | || ||| || || |||||||| ||| Sbjct 5151 ACACCAATTCCTCCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTGTCATATATG 5092 Query 63603 CCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 ||||| ||||||||||| ||||| | ||||| |||||| Sbjct 5091 CCTTCAATGCTATCATCTTTCATGCATATCAGAAAGCAGCTA 5050 >seq180108 Length=14591 Score = 102 bits (112), Expect = 1e-16 Identities = 156/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 ||||| || || | || | || || | ||| | || | ||||||||||||||| || Sbjct 8328 CCTCCTTGGTCAACATAACGGGCAGTATCATTGAAGACACGCAACATTGGAATAATGCCA 8387 Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542 || ||| ||||||| || || || || | |||| | |||||||||||| || || Sbjct 8388 TTGGATGTACCATTTGTTCCACGTATGTAACTTCCAGTTGCACGAATATTATGAACAGAG 8447 Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 | ||| ||||| ||||| ||| ||| | || ||| || || |||||||| ||| Sbjct 8448 ACACCAATTCCTCCTGC---TTTGCTGATAACAGCACATTCCTTGAAAGTGTCATATATG 8504 Query 63603 CCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 ||||| ||||||||| | ||||| | || || |||||| Sbjct 8505 CCTTCAATGCTATCACCTTTCATGCATATCAGGAAGCAGCTA 8546 Score = 86.0 bits (94), Expect = 8e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| ||||| || | ||| |||||||| || || ||||| | | || | | | Sbjct 8717 GTTCCAGCATTGAAGAGGGTGGGAGAAGCATGAGTGAACCACCTCTGTGACATCAAGTGA 8776 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || ||| ||| | || || |||| | |||||| || ||||| || | ||| | | Sbjct 8777 TAAGTCCTGATAACAGAATCAATATTATCCTTATGAATCCCAACTGCAACCCTCATCAGC 8836 Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842 || || ||||| |||||||||| ||| | || ||||| | || ||| | || | Sbjct 8837 ATATGTTGAGGCCTTTCAACAACTTTCCCTTGGATCTTCAATAGATAAGATCTCTCAAGG 8896 Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||||||||||||||| | || |||||| | || || ||||| Sbjct 8897 GTTTTAAAACCAAAATAATCATAGTCAAAGTCCCTGTCATATATAAT 8943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626165397955680