Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq293582 118 1e-21
seq294625 114 2e-20
seq161111 104 3e-17
seq180108 102 1e-16
>seq293582
Length=2029
Score = 118 bits (130), Expect = 1e-21
Identities = 402/620 (65%), Gaps = 6/620 (1%)
Strand=Plus/Plus
Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635
||||| || ||||||||||||||||| || ||||| || || |||||||| || |||
Sbjct 1291 ATCAAGCACGCGAAATCGCAGTGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAAC 1350
Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695
|| || || ||||| ||||| ||||| || ||||| || |||| ||| ||||||
Sbjct 1351 GTTAGGCCCGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTTCCGGAG 1410
Query 33696 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA 33755
|||||||| || || || || ||||| | | || | |||| | | | | | |
Sbjct 1411 AAGAAGATGCCCTCGACACAGGCGAAGGCGACGA-TC-CGCTCCGCGAAGGACTCGGACC 1468
Query 33756 TGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813
|| ||||| | ||||| | ||||||| | | || || || || || | ||
Sbjct 1469 CGTCGATCCAGCGGAGGGCCCACTGGGCCTTCCGCTGGATGCAGGGGATGGTCTCCACGG 1528
Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873
| | || || ||| || || || || || | || | || | | || || |
Sbjct 1529 CGTGGAACAGCCGGTTCTTCTCGTTGGAGTCCTTGATGTAGGACTCCAGGAGGAGGCTGT 1588
Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933
|||| ||||| || ||||| || ||||| ||||| || |||||||| | ||||| |
Sbjct 1589 ACATCTCCGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCCG 1648
Query 33934 TAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993
| ||| || || | || ||| | || | ||| || || || || || ||
Sbjct 1649 CGACCTGGACCTCCTTCATGAAGCGTCCGGCAAGATTCTCCAGGACGATGCCGTCCGAGG 1708
Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 34053
| ||||| || || | || || | || || | ||| | | | | | |||
Sbjct 1709 CGGCAAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCG-CCGTCGGTCAACGACTCC 1767
Query 34054 AATCATTGAT-ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 34112
|| | | || | |||| || |||||||| | |||||||| || || || ||
Sbjct 1768 CATTGGCGCTGGTCCTGCGATAGGTCGACTTCTTCAGCCGTCCAAAACGAGGCTTCGGCT 1827
Query 34113 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 34172
||||| ||||| | |||||| | | |||| ||||||||| || |||| || |||
Sbjct 1828 TTTTTGTACATTTCCCAGATTTGGGGGTATTTGATTGGGAACATGCAGAATCGATCGGGA 1887
Query 34173 TTTGGTGCAAGGATAGGTTC 34192
||||| || |||| |||||
Sbjct 1888 TTTGGGGCGAGGAGGGGTTC 1907
>seq294625
Length=4757
Score = 114 bits (126), Expect = 2e-20
Identities = 400/619 (65%), Gaps = 8/619 (1%)
Strand=Plus/Plus
Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637
||| || |||||||||||||| | || ||||||| ||| || ||||| || || ||
Sbjct 4077 CAAGCAGGCGAAATCGCAGTGTAATCCTTCGTCTCGTGAAATCAACTCGTTGGAGAAGGT 4136
Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697
| ||| ||||| | || || || || | ||| || || | ||| ||| || ||
Sbjct 4137 CAATCCAGGCATCAAACCGCGTTTCTTCAACCAGAAGATAGCGCAGAAGCTTCCCGAGAA 4196
Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGCTGTCA 33755
||| || ||||| || ||| |||||||| | | || || ||| | || | ||
Sbjct 4197 GAATATCCCTTCGACGCAAGCGAAGGCAATGATACGTTCCGCA-AACGACTCCG-AGCCA 4254
Query 33756 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815
| |||||| | ||||||| ||||||||| | || ||||| || || || | ||
Sbjct 4255 TCGATCCACCTCATCGCCCAATTGGCCTTCTTCTGGACGCAAGGAATGGTCTCCACAGCG 4314
Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875
||| || | || || || || || | || || |||| | | || |||
Sbjct 4315 CGAAACAGCCTCATCTTGTCGTTGGAGTCCTTGATGTAGGTCTCGAGGAGCAAGCTGTAC 4374
Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935
|| || || |||||||| || || || ||||| |||||||||||| | ||||||||
Sbjct 4375 ATCTCGGAGTGAATGTTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGAGCCTCGGCG 4434
Query 33936 ATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995
| || || ||| | || | | | |||| ||||| || ||||| || |||
Sbjct 4435 ACTTGAACCTCTTTCATGAACCTTCCGGCTAGGTTTTCCAATACGATTCCGTCGGAGGCG 4494
Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 34055
|| || || || | || || | || || | | |||| | || || | |||
Sbjct 4495 GCGAAGAAGGCGAGGACGTGAGTGATGAAGTGTCGTTCGCCGTCGGTGAGGGAGTCCCAG 4554
Query 34056 T--CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113
| | ||| || | || | ||| || || || | ||||| || || || || ||||
Sbjct 4555 TGGCGTTG--GTCCTGTGACAAATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCGGCCT 4612
Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 34173
| || ||||| | ||| || | | | || | || ||||| ||| ||||||| || |
Sbjct 4613 TCTTGTACATTTCCCAAATCTGAGGGTAGCGAATAGGGAACATACAGAATCTATCGGGGT 4672
Query 34174 TTGGTGCAAGGATAGGTTC 34192
| || ||||||| ||| ||
Sbjct 4673 TAGGAGCAAGGAGAGGCTC 4691
>seq161111
Length=12134
Score = 104 bits (114), Expect = 3e-17
Identities = 156/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482
||||| || || | || | ||| || | ||| | || | ||||||||||||||| ||
Sbjct 5271 CCTCCTTGGTCAACATAACGAGCTGTATCATTGAAGACACGCAACATTGGAATAATGCCA 5212
Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542
|| ||| | ||||| || || || || | |||| | | ||| |||||| || ||
Sbjct 5211 TTGGATGTGCCATTTGTTCCACGTATGTAACTTCCAGTTGAACGGATATTATGAACAGAG 5152
Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602
| ||| ||||| ||||| ||| ||| | || ||| || || |||||||| |||
Sbjct 5151 ACACCAATTCCTCCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTGTCATATATG 5092
Query 63603 CCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644
||||| ||||||||||| ||||| | ||||| ||||||
Sbjct 5091 CCTTCAATGCTATCATCTTTCATGCATATCAGAAAGCAGCTA 5050
>seq180108
Length=14591
Score = 102 bits (112), Expect = 1e-16
Identities = 156/222 (70%), Gaps = 3/222 (1%)
Strand=Plus/Plus
Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482
||||| || || | || | || || | ||| | || | ||||||||||||||| ||
Sbjct 8328 CCTCCTTGGTCAACATAACGGGCAGTATCATTGAAGACACGCAACATTGGAATAATGCCA 8387
Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542
|| ||| ||||||| || || || || | |||| | |||||||||||| || ||
Sbjct 8388 TTGGATGTACCATTTGTTCCACGTATGTAACTTCCAGTTGCACGAATATTATGAACAGAG 8447
Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602
| ||| ||||| ||||| ||| ||| | || ||| || || |||||||| |||
Sbjct 8448 ACACCAATTCCTCCTGC---TTTGCTGATAACAGCACATTCCTTGAAAGTGTCATATATG 8504
Query 63603 CCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644
||||| ||||||||| | ||||| | || || ||||||
Sbjct 8505 CCTTCAATGCTATCACCTTTCATGCATATCAGGAAGCAGCTA 8546
Score = 86.0 bits (94), Expect = 8e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722
||||| ||||| || | ||| |||||||| || || ||||| | | || | | |
Sbjct 8717 GTTCCAGCATTGAAGAGGGTGGGAGAAGCATGAGTGAACCACCTCTGTGACATCAAGTGA 8776
Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782
|| ||| ||| | || || |||| | |||||| || ||||| || | ||| | |
Sbjct 8777 TAAGTCCTGATAACAGAATCAATATTATCCTTATGAATCCCAACTGCAACCCTCATCAGC 8836
Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842
|| || ||||| |||||||||| ||| | || ||||| | || ||| | || |
Sbjct 8837 ATATGTTGAGGCCTTTCAACAACTTTCCCTTGGATCTTCAATAGATAAGATCTCTCAAGG 8896
Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889
||||||||||||||||| | || |||||| | || || |||||
Sbjct 8897 GTTTTAAAACCAAAATAATCATAGTCAAAGTCCCTGTCATATATAAT 8943
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 626165397955680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |