Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq284040 104 2e-17 seq277754 102 8e-17 seq228143 98.7 1e-15 seq156932 96.9 3e-15 seq243249 89.7 5e-13 seq25275 84.2 2e-11 >seq284040 Length=2693 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 || |||| ||| | || | ||| ||||| || || ||||| |||||| || || || Sbjct 976 AACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCCAAAGTCCTT 917 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 |||||||||||| || || || |||||| ||| ||||| || || || || ||||| Sbjct 916 CCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGGATTCCTTCC 857 Query 139667 TTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| | || | || | | || | ||||||| | |||||||| | || Sbjct 856 TTGTC-CTGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCACCTCCAACGT 798 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||| || ||||||||||| || ||||| || ||||| Sbjct 797 GATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 759 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCT 139596 ||||| || | || | ||| | ||| | || ||||| || || ||||| || || ||| Sbjct 757 CCGCCGCGGAGGCGTAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCT 698 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || ||| || ||||| || || || |||| ||||| |||||||| ||||| Sbjct 697 -AGGGTTCTGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCCGGAGG 639 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | || |||| | ||| || Sbjct 638 AATTCCTTCCTTGTCCTGGATCTTCGCCTTGACGTTATCGATCGTATCGGAGCTCTCGAC 579 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||||||||| | ||||| ||||| || ||||| Sbjct 578 CTCCAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 531 >seq277754 Length=2847 Score = 102 bits (112), Expect = 8e-17 Identities = 150/211 (71%), Gaps = 10/211 (5%) Strand=Plus/Minus Query 139553 AAAACTAAG-TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||||| || || | ||||||||| ||||| ||||| || ||| | || || ||| Sbjct 2790 AAAACACAGATGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTACCGTC 2731 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||||| ||||| || || |||| || |||||||| || || || |||||||| ||||| Sbjct 2730 CTCGAGTTGTTTTCCGGCGAAGATGAGCCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTC 2671 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 || ||| ||| ||| || ||||||| || ||| ||||| | || | || Sbjct 2670 GGC--TTTCACGTTGTAGATG-------GTGTCGGAGGACTCAACCTCCAGCGTTATGGT 2620 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGC 139762 ||||||||| | ||||| ||||| || ||| Sbjct 2619 CTTGCCGGTTAGGGTTTTCACGAAGATCTGC 2589 >seq228143 Length=6931 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| |||||||||||||| | ||| ||| ||||| | ||| || || Sbjct 3521 GTAGACTCTTTCTGAATGTTATAATCAGCAAGTGTCCTCCCATCTTCCAACTGCTTCCCT 3462 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | |||||||| || || || || || ||||| ||| ||| || Sbjct 3461 GCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCTTGGATCTTTGCCTTC 3402 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || | | |||||||| | || | |||||| || |||||||| Sbjct 3401 ACATTATCAATCGTATCCGAGCTTTCCACCTCCAGAGTGATCGTCTTTCCAGTCAACGTC 3342 Query 139748 TTTACGAATATTTGCAT 139764 || |||||||| ||||| Sbjct 3341 TTAACGAATATCTGCAT 3325 >seq156932 Length=6713 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || ||||| ||||| ||||| || ||| Sbjct 4212 GCCACCGCGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGC 4271 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||| |||||||||||||| ||| ||||||| | |||||||| ||||| Sbjct 4272 TAGAGTTCGGCCGTCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGCTGATCTGGAGG 4331 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | ||| |||| ||| || Sbjct 4332 AATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATTGTATCGGAACTCTCGAC 4391 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||||| || | || || |||||||| ||||| Sbjct 4392 CTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAATATCTGCAT 4439 >seq243249 Length=1014 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 9/192 (5%) Strand=Plus/Plus Query 139571 GACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCA 139630 ||||| ||||| ||| | || ||| | || || ||| ||||||||||| || || Sbjct 759 GACTCCTTTTGGATGCTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGTTTTCCGGCG 818 Query 139631 TAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC 139690 |||| || |||||||| || || || |||||||| |||||| | ||| ||| ||| Sbjct 819 AAGATGAGCCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCG--GCTTTCACGTTGTAGA 876 Query 139691 TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTT 139750 || ||||||| || ||| ||||| | || | ||||||||||| | ||||| Sbjct 877 TG-------GTGTCGGAGGACTCAACCTCCAACGTTATGGTCTTGCCGGTTAGAGTTTTC 929 Query 139751 ACGAATATTTGC 139762 || || || ||| Sbjct 930 ACAAAGATCTGC 941 >seq25275 Length=8276 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| || |||| |||||||| || || ||||||||||| Sbjct 6157 CCACCGCGAAGACGAAGAACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAATCCGCA 6098 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || ||||| || |||||| | ||||| | |||||||| || || Sbjct 6097 AGAGTCCTTCCATCCTCAAGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGGG 6038 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| | || | ||| | | || | ||||| | |||||| Sbjct 6037 ATCCCCTCCTTGTC-CTGAATCTTCGCTTTCACATTGTCGATCGTGTCCGAACTCTCCAC 5979 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| || |||||||| || || || || ||||| Sbjct 5978 CTCCAGCGTGATGGTCTTCCCTGTCAACGTCTTAACAAAGATCTGCAT 5931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493187411675200