Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq284040 104 2e-17
seq277754 102 8e-17
seq228143 98.7 1e-15
seq156932 96.9 3e-15
seq243249 89.7 5e-13
seq25275 84.2 2e-11
>seq284040
Length=2693
Score = 104 bits (114), Expect = 2e-17
Identities = 156/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606
|| |||| ||| | || | ||| ||||| || || ||||| |||||| || || ||
Sbjct 976 AACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCCAAAGTCCTT 917
Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666
|||||||||||| || || || |||||| ||| ||||| || || || || |||||
Sbjct 916 CCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGGATTCCTTCC 857
Query 139667 TTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725
||||| ||| | || | || | | || | ||||||| | |||||||| | ||
Sbjct 856 TTGTC-CTGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCACCTCCAACGT 798
Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
| ||| || ||||||||||| || ||||| || |||||
Sbjct 797 GATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 759
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCT 139596
||||| || | || | ||| | ||| | || ||||| || || ||||| || || |||
Sbjct 757 CCGCCGCGGAGGCGTAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCT 698
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| || || ||| || ||||| || || || |||| ||||| |||||||| |||||
Sbjct 697 -AGGGTTCTGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCCGGAGG 639
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| || || | | || | || |||| | ||| ||
Sbjct 638 AATTCCTTCCTTGTCCTGGATCTTCGCCTTGACGTTATCGATCGTATCGGAGCTCTCGAC 579
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | || | ||||||||||| | ||||| ||||| || |||||
Sbjct 578 CTCCAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 531
>seq277754
Length=2847
Score = 102 bits (112), Expect = 8e-17
Identities = 150/211 (71%), Gaps = 10/211 (5%)
Strand=Plus/Minus
Query 139553 AAAACTAAG-TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611
||||| || || | ||||||||| ||||| ||||| || ||| | || || |||
Sbjct 2790 AAAACACAGATGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTACCGTC 2731
Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671
||||| ||||| || || |||| || |||||||| || || || |||||||| |||||
Sbjct 2730 CTCGAGTTGTTTTCCGGCGAAGATGAGCCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTC 2671
Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731
|| ||| ||| ||| || ||||||| || ||| ||||| | || | ||
Sbjct 2670 GGC--TTTCACGTTGTAGATG-------GTGTCGGAGGACTCAACCTCCAGCGTTATGGT 2620
Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGC 139762
||||||||| | ||||| ||||| || |||
Sbjct 2619 CTTGCCGGTTAGGGTTTTCACGAAGATCTGC 2589
>seq228143
Length=6931
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
||||||||||| |||||||||||||| | ||| ||| ||||| | ||| || ||
Sbjct 3521 GTAGACTCTTTCTGAATGTTATAATCAGCAAGTGTCCTCCCATCTTCCAACTGCTTCCCT 3462
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||||| | |||||||| || || || || || ||||| ||| ||| ||
Sbjct 3461 GCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCTTGGATCTTTGCCTTC 3402
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | || || | | |||||||| | || | |||||| || ||||||||
Sbjct 3401 ACATTATCAATCGTATCCGAGCTTTCCACCTCCAGAGTGATCGTCTTTCCAGTCAACGTC 3342
Query 139748 TTTACGAATATTTGCAT 139764
|| |||||||| |||||
Sbjct 3341 TTAACGAATATCTGCAT 3325
>seq156932
Length=6713
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | || ||||| | || ||||| ||||| ||||| || |||
Sbjct 4212 GCCACCGCGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGC 4271
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| || | ||| |||||||||||||| ||| ||||||| | |||||||| |||||
Sbjct 4272 TAGAGTTCGGCCGTCCTCGAGCTGTTTACCGGCAAAGATCAGCCTCTGCTGATCTGGAGG 4331
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| || || | | || | ||| |||| ||| ||
Sbjct 4332 AATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATTGTATCGGAACTCTCGAC 4391
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | || | |||||||| || | || || |||||||| |||||
Sbjct 4392 CTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAATATCTGCAT 4439
>seq243249
Length=1014
Score = 89.7 bits (98), Expect = 5e-13
Identities = 135/192 (70%), Gaps = 9/192 (5%)
Strand=Plus/Plus
Query 139571 GACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCA 139630
||||| ||||| ||| | || ||| | || || ||| ||||||||||| || ||
Sbjct 759 GACTCCTTTTGGATGCTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGTTTTCCGGCG 818
Query 139631 TAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC 139690
|||| || |||||||| || || || |||||||| |||||| | ||| ||| |||
Sbjct 819 AAGATGAGCCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCG--GCTTTCACGTTGTAGA 876
Query 139691 TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTT 139750
|| ||||||| || ||| ||||| | || | ||||||||||| | |||||
Sbjct 877 TG-------GTGTCGGAGGACTCAACCTCCAACGTTATGGTCTTGCCGGTTAGAGTTTTC 929
Query 139751 ACGAATATTTGC 139762
|| || || |||
Sbjct 930 ACAAAGATCTGC 941
>seq25275
Length=8276
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | ||| || |||| |||||||| || || |||||||||||
Sbjct 6157 CCACCGCGAAGACGAAGAACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAATCCGCA 6098
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || || || || ||||| || |||||| | ||||| | |||||||| || ||
Sbjct 6097 AGAGTCCTTCCATCCTCAAGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGGG 6038
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| || || ||||| ||| | || | ||| | | || | ||||| | ||||||
Sbjct 6037 ATCCCCTCCTTGTC-CTGAATCTTCGCTTTCACATTGTCGATCGTGTCCGAACTCTCCAC 5979
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | || | ||||| || |||||||| || || || || |||||
Sbjct 5978 CTCCAGCGTGATGGTCTTCCCTGTCAACGTCTTAACAAAGATCTGCAT 5931
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 493187411675200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |