Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq293582 131 2e-25
seq161111 113 6e-20
seq180108 111 2e-19
>seq293582
Length=2029
Score = 131 bits (144), Expect = 2e-25
Identities = 407/621 (66%), Gaps = 8/621 (1%)
Strand=Plus/Plus
Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013
||||| || ||||||||||||||||| || ||||| || || | ||||||||| |||
Sbjct 1291 ATCAAGCACGCGAAATCGCAGTGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAAC 1350
Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGA 50072
|| || || ||||| ||||| ||||| || ||||| || |||| |||| || || ||
Sbjct 1351 GTTAGGCCCGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGCTTCCGGA 1409
Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC 50132
|||||||| || || || ||| ||||| || | || | |||| | | | | | |
Sbjct 1410 GAAGAAGATGCCCTCGACACAGGCGAAGGCGACGA-TC-CGCTCCGCGAAGGACTCGGAC 1467
Query 50133 ATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190
|| ||||| | ||||| | ||||||| | | || || || || || | |
Sbjct 1468 CCGTCGATCCAGCGGAGGGCCCACTGGGCCTTCCGCTGGATGCAGGGGATGGTCTCCACG 1527
Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250
|| | || || ||| || || || || || | || | || | | || ||
Sbjct 1528 GCGTGGAACAGCCGGTTCTTCTCGTTGGAGTCCTTGATGTAGGACTCCAGGAGGAGGCTG 1587
Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310
||||| ||||| || ||||| || ||||| ||||| || |||||||| | |||||
Sbjct 1588 TACATCTCCGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCC 1647
Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370
| | ||| || || | || ||| | || | ||| || || || ||||| |
Sbjct 1648 GCGACCTGGACCTCCTTCATGAAGCGTCCGGCAAGATTCTCCAGGACGATGCCGTCCGAG 1707
Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430
|| ||||| || || | || || | || || || ||| | || | | ||
Sbjct 1708 GCGGCAAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGCCGTCGGTCA-ACGACTC 1766
Query 50431 CAATCATTGAT-ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489
| || | | || | |||| || |||||||| | |||||||| || || || ||
Sbjct 1767 CCATTGGCGCTGGTCCTGCGATAGGTCGACTTCTTCAGCCGTCCAAAACGAGGCTTCGGC 1826
Query 50490 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGG 50549
||||| ||||| | |||||| | | |||| ||||||||| || |||| || ||
Sbjct 1827 TTTTTTGTACATTTCCCAGATTTGGGGGTATTTGATTGGGAACATGCAGAATCGATCGGG 1886
Query 50550 ATTTGGTGCAAGGATCGGTTC 50570
|||||| || |||| |||||
Sbjct 1887 ATTTGGGGCGAGGAGGGGTTC 1907
>seq161111
Length=12134
Score = 113 bits (124), Expect = 6e-20
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154
||||| || || | || | ||| || | ||| | || | ||||||||||||||| |||
Sbjct 5271 CCTCCTTGGTCAACATAACGAGCTGTATCATTGAAGACACGCAACATTGGAATAATGCCA 5212
Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214
|||||||| ||||| || || || || |||||| | | ||| |||||| || ||
Sbjct 5211 TTGGATGTGCCATTTGTTCCACGTATGTAACTTCCAGTTGAACGGATATTATGAACAGAG 5152
Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274
| ||| ||||| ||||| ||| ||| | || ||| || || || ||||| |||
Sbjct 5151 ACACCAATTCCTCCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTGTCATATATG 5092
Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316
|| || ||||||||||| ||||| | ||||| ||||||
Sbjct 5091 CCTTCAATGCTATCATCTTTCATGCATATCAGAAAGCAGCTA 5050
>seq180108
Length=14591
Score = 111 bits (122), Expect = 2e-19
Identities = 158/222 (71%), Gaps = 3/222 (1%)
Strand=Plus/Plus
Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154
||||| || || | || | || || | ||| | || | ||||||||||||||| |||
Sbjct 8328 CCTCCTTGGTCAACATAACGGGCAGTATCATTGAAGACACGCAACATTGGAATAATGCCA 8387
Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214
|||||||||||||| || || || || |||||| | |||||||||||| || ||
Sbjct 8388 TTGGATGTACCATTTGTTCCACGTATGTAACTTCCAGTTGCACGAATATTATGAACAGAG 8447
Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274
| ||| ||||| ||||| ||| ||| | || ||| || || || ||||| |||
Sbjct 8448 ACACCAATTCCTCCTGC---TTTGCTGATAACAGCACATTCCTTGAAAGTGTCATATATG 8504
Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316
|| || ||||||||| | ||||| | || || ||||||
Sbjct 8505 CCTTCAATGCTATCACCTTTCATGCATATCAGGAAGCAGCTA 8546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 714103684925840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |