Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq293582 131 2e-25 seq161111 113 6e-20 seq180108 111 2e-19 >seq293582 Length=2029 Score = 131 bits (144), Expect = 2e-25 Identities = 407/621 (66%), Gaps = 8/621 (1%) Strand=Plus/Plus Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 ||||| || ||||||||||||||||| || ||||| || || | ||||||||| ||| Sbjct 1291 ATCAAGCACGCGAAATCGCAGTGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAAC 1350 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGA 50072 || || || ||||| ||||| ||||| || ||||| || |||| |||| || || || Sbjct 1351 GTTAGGCCCGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGCTTCCGGA 1409 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC 50132 |||||||| || || || ||| ||||| || | || | |||| | | | | | | Sbjct 1410 GAAGAAGATGCCCTCGACACAGGCGAAGGCGACGA-TC-CGCTCCGCGAAGGACTCGGAC 1467 Query 50133 ATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 || ||||| | ||||| | ||||||| | | || || || || || | | Sbjct 1468 CCGTCGATCCAGCGGAGGGCCCACTGGGCCTTCCGCTGGATGCAGGGGATGGTCTCCACG 1527 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 || | || || ||| || || || || || | || | || | | || || Sbjct 1528 GCGTGGAACAGCCGGTTCTTCTCGTTGGAGTCCTTGATGTAGGACTCCAGGAGGAGGCTG 1587 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 ||||| ||||| || ||||| || ||||| ||||| || |||||||| | ||||| Sbjct 1588 TACATCTCCGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCC 1647 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 | | ||| || || | || ||| | || | ||| || || || ||||| | Sbjct 1648 GCGACCTGGACCTCCTTCATGAAGCGTCCGGCAAGATTCTCCAGGACGATGCCGTCCGAG 1707 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 || ||||| || || | || || | || || || ||| | || | | || Sbjct 1708 GCGGCAAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGCCGTCGGTCA-ACGACTC 1766 Query 50431 CAATCATTGAT-ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489 | || | | || | |||| || |||||||| | |||||||| || || || || Sbjct 1767 CCATTGGCGCTGGTCCTGCGATAGGTCGACTTCTTCAGCCGTCCAAAACGAGGCTTCGGC 1826 Query 50490 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGG 50549 ||||| ||||| | |||||| | | |||| ||||||||| || |||| || || Sbjct 1827 TTTTTTGTACATTTCCCAGATTTGGGGGTATTTGATTGGGAACATGCAGAATCGATCGGG 1886 Query 50550 ATTTGGTGCAAGGATCGGTTC 50570 |||||| || |||| ||||| Sbjct 1887 ATTTGGGGCGAGGAGGGGTTC 1907 >seq161111 Length=12134 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||| || || | || | ||| || | ||| | || | ||||||||||||||| ||| Sbjct 5271 CCTCCTTGGTCAACATAACGAGCTGTATCATTGAAGACACGCAACATTGGAATAATGCCA 5212 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 |||||||| ||||| || || || || |||||| | | ||| |||||| || || Sbjct 5211 TTGGATGTGCCATTTGTTCCACGTATGTAACTTCCAGTTGAACGGATATTATGAACAGAG 5152 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| ||||| ||||| ||| ||| | || ||| || || || ||||| ||| Sbjct 5151 ACACCAATTCCTCCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTGTCATATATG 5092 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 || || ||||||||||| ||||| | ||||| |||||| Sbjct 5091 CCTTCAATGCTATCATCTTTCATGCATATCAGAAAGCAGCTA 5050 >seq180108 Length=14591 Score = 111 bits (122), Expect = 2e-19 Identities = 158/222 (71%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||| || || | || | || || | ||| | || | ||||||||||||||| ||| Sbjct 8328 CCTCCTTGGTCAACATAACGGGCAGTATCATTGAAGACACGCAACATTGGAATAATGCCA 8387 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 |||||||||||||| || || || || |||||| | |||||||||||| || || Sbjct 8388 TTGGATGTACCATTTGTTCCACGTATGTAACTTCCAGTTGCACGAATATTATGAACAGAG 8447 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| ||||| ||||| ||| ||| | || ||| || || || ||||| ||| Sbjct 8448 ACACCAATTCCTCCTGC---TTTGCTGATAACAGCACATTCCTTGAAAGTGTCATATATG 8504 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 || || ||||||||| | ||||| | || || |||||| Sbjct 8505 CCTTCAATGCTATCACCTTTCATGCATATCAGGAAGCAGCTA 8546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714103684925840