Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq25275 93.3 3e-14
>seq25275
Length=8276
Score = 93.3 bits (102), Expect = 3e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960
||||| || | ||| |||||| || | |||||||||| ||| || || |||| ||
Sbjct 5227 ACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCCAAAGTGCGACCGTCCTCG 5168
Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020
| || ||||||||||| ||||| | ||| || || | || | ||| || || || |
Sbjct 5167 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGG 5108
Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTT 43079
|| | | || || | | | ||||| | ||| |||||| || | ||| || |||||
Sbjct 5107 ATTTTCGCCTTCACGTTATCGATAGTGTC-CGAGCTCTCGACTTCCAACGTGATGGTTTT 5049
Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| ||||| ||||| ||||| ||||||||
Sbjct 5048 CCCTGTTAGGGTTTTGACAAAGATTTGCAT 5019
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|||||||| || | || || | |||| ||| |||||| || | |||||| |||| |
Sbjct 4789 CCTCCACGGAGACGTAGGACGAGGTGGAGTGTGGACTCCTTCTGGATATTGTAGTCGGCC 4730
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
|| || || |||| || | || ||||||||||| |||| | || ||||| | ||
Sbjct 4729 AAAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGATCTGGGGGA 4670
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| ||||| || || ||| | ||||| || | | ||| ||| | ||||||
Sbjct 4669 ATCCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATTGTATCGGAACTCTCGACC 4610
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|||| || || || ||||| ||||| || || || || || |||||
Sbjct 4609 TCTAGGGTGATGGTCTTTCCAGTTAGTGTCTTAACGAAGATCTGCAT 4563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379213391818548
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |