Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq25275 93.3 3e-14 >seq25275 Length=8276 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| || | ||| |||||| || | |||||||||| ||| || || |||| || Sbjct 5227 ACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCCAAAGTGCGACCGTCCTCG 5168 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | || ||||||||||| ||||| | ||| || || | || | ||| || || || | Sbjct 5167 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGG 5108 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTT 43079 || | | || || | | | ||||| | ||| |||||| || | ||| || ||||| Sbjct 5107 ATTTTCGCCTTCACGTTATCGATAGTGTC-CGAGCTCTCGACTTCCAACGTGATGGTTTT 5049 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || ||||| ||||| ||||| |||||||| Sbjct 5048 CCCTGTTAGGGTTTTGACAAAGATTTGCAT 5019 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | || || | |||| ||| |||||| || | |||||| |||| | Sbjct 4789 CCTCCACGGAGACGTAGGACGAGGTGGAGTGTGGACTCCTTCTGGATATTGTAGTCGGCC 4730 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || |||| || | || ||||||||||| |||| | || ||||| | || Sbjct 4729 AAAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGATCTGGGGGA 4670 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| | ||||| || | | ||| ||| | |||||| Sbjct 4669 ATCCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATTGTATCGGAACTCTCGACC 4610 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || ||||| ||||| || || || || || ||||| Sbjct 4609 TCTAGGGTGATGGTCTTTCCAGTTAGTGTCTTAACGAAGATCTGCAT 4563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379213391818548