Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq293582 131 2e-25 seq294625 127 3e-24 seq161111 98.7 1e-15 seq180108 96.9 5e-15 >seq293582 Length=2029 Score = 131 bits (144), Expect = 2e-25 Identities = 407/621 (66%), Gaps = 8/621 (1%) Strand=Plus/Plus Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118 ||||| || ||||||||||||||||| || || || || || ||||||||||| ||| Sbjct 1291 ATCAAGCACGCGAAATCGCAGTGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAAC 1350 Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGA 42177 || || || ||||| ||||| ||||| || ||||| || || | |||| || ||| || Sbjct 1351 GTTAGGCCCGGCATCAGGCCGCGCTTCTTGAGCCAGAAGAT-GGCGCAGAAGCTTCCGGA 1409 Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 42237 |||||||| || || || || ||||| | | || | |||| | | | | | | Sbjct 1410 GAAGAAGATGCCCTCGACACAGGCGAAGGCGACGA-TC-CGCTCCGCGAAGGACTCGGAC 1467 Query 42238 ATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 || ||||| | ||||| | ||||||| | | || || || || || | | Sbjct 1468 CCGTCGATCCAGCGGAGGGCCCACTGGGCCTTCCGCTGGATGCAGGGGATGGTCTCCACG 1527 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 || | || || ||| || || || || || | || | || | | || || Sbjct 1528 GCGTGGAACAGCCGGTTCTTCTCGTTGGAGTCCTTGATGTAGGACTCCAGGAGGAGGCTG 1587 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 ||||| || || || ||||| || ||||| ||||| || |||||||| | ||||| Sbjct 1588 TACATCTCCGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCC 1647 Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 | ||||| || || | || ||| | || | ||| || || || ||||| | Sbjct 1648 GCGACCTGGACCTCCTTCATGAAGCGTCCGGCAAGATTCTCCAGGACGATGCCGTCCGAG 1707 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTC 42535 || ||||| || || | || || | || || | ||| ||| | | | | || Sbjct 1708 GCGGCAAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCG-CCGTCGGTCAACGACTC 1766 Query 42536 CAATCATTGAT-ATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 | || | | || | |||| || |||||||| |||||||||| || ||||| || Sbjct 1767 CCATTGGCGCTGGTCCTGCGATAGGTCGACTTCTTCAGCCGTCCAAAACGAGGCTTCGGC 1826 Query 42595 CTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGG 42654 ||||| ||||| | |||||| | | |||| |||||||| || |||| || || Sbjct 1827 TTTTTTGTACATTTCCCAGATTTGGGGGTATTTGATTGGGAACATGCAGAATCGATCGGG 1886 Query 42655 ATTTGGTGCAAGGATCGGTTC 42675 |||||| || |||| ||||| Sbjct 1887 ATTTGGGGCGAGGAGGGGTTC 1907 >seq294625 Length=4757 Score = 127 bits (140), Expect = 3e-24 Identities = 401/614 (65%), Gaps = 12/614 (2%) Strand=Plus/Plus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 ||| || |||||||||||||| | || || |||| ||| || |||||||| || || Sbjct 4077 CAAGCAGGCGAAATCGCAGTGTAATCCTTCGTCTCGTGAAATCAACTCGTTGGAGAAGGT 4136 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAA 42179 | ||| ||||| | || || || || | ||| || |||| |||| || ||| || | Sbjct 4137 CAATCCAGGCATCAAACCGCGTTTCTTCAACCAGAAGATAG-CGCAGAAGCTTCCCGAGA 4195 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC--TGTC 42237 |||| || ||||| || || |||||||| | | ||| || || | | | | Sbjct 4196 AGAATATCCCTTCGACGCAAGCGAAGGCAAT--GATACGTTCCGCAAACGACTCCGAGCC 4253 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || |||||| | ||||||| ||||||||| | || ||||| || || || | || Sbjct 4254 ATCGATCCACCTCATCGCCCAATTGGCCTTCTTCTGGACGCAAGGAATGGTCTCCACAGC 4313 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 ||| || | || || || || || | || || |||| | | || || Sbjct 4314 GCGAAACAGCCTCATCTTGTCGTTGGAGTCCTTGATGTAGGTCTCGAGGAGCAAGCTGTA 4373 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || || |||||||| || || || ||||| |||||||||||| | ||||||| Sbjct 4374 CATCTCGGAGTGAATGTTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGAGCCTCGGC 4433 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 || || || ||| | || | | | |||| ||||| || |||||||| ||| Sbjct 4434 GACTTGAACCTCTTTCATGAACCTTCCGGCTAGGTTTTCCAATACGATTCCGTCGGAGGC 4493 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCA 42537 || || || || | || || | || || | | |||| ||| | | | | ||| Sbjct 4494 GGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGTCGTTCG-CCGTCGGTGAGGGAGTCCC 4552 Query 42538 A---TCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 | | ||| || | || | ||| || || || | ||||| || || ||||| || Sbjct 4553 AGTGGCGTTG--GTCCTGTGACAAATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCGGC 4610 Query 42595 CTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGG 42654 ||| || ||||| | ||| || | | | || |||| ||||| ||| ||||||| || Sbjct 4611 CTTCTTGTACATTTCCCAAATCTGAGGGTAGCGAATAGGGAACATACAGAATCTATCGGG 4670 Query 42655 ATTTGGTGCAAGGA 42668 || || ||||||| Sbjct 4671 GTTAGGAGCAAGGA 4684 >seq161111 Length=12134 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||| || || | || | ||| || | ||| | || | ||||||||||||||| ||| Sbjct 5271 CCTCCTTGGTCAACATAACGAGCTGTATCATTGAAGACACGCAACATTGGAATAATGCCA 5212 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 ||||||| ||||| || || || || |||||| | | ||| ||||| || || Sbjct 5211 TTGGATGTGCCATTTGTTCCACGTATGTAACTTCCAGTTGAACGGATATTATGAACAGAG 5152 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| ||||| ||||| ||| ||| | || ||| || || || ||||| ||| Sbjct 5151 ACACCAATTCCTCCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTGTCATATATG 5092 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 || || || |||||||| ||||| | ||||| |||||| Sbjct 5091 CCTTCAATGCTATCATCTTTCATGCATATCAGAAAGCAGCTA 5050 >seq180108 Length=14591 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||| || || | || | || || | ||| | || | ||||||||||||||| ||| Sbjct 8328 CCTCCTTGGTCAACATAACGGGCAGTATCATTGAAGACACGCAACATTGGAATAATGCCA 8387 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 ||||||| |||||| || || || || |||||| | ||||||||||| || || Sbjct 8388 TTGGATGTACCATTTGTTCCACGTATGTAACTTCCAGTTGCACGAATATTATGAACAGAG 8447 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| ||||| ||||| ||| ||| | || ||| || || || ||||| ||| Sbjct 8448 ACACCAATTCCTCCTGC---TTTGCTGATAACAGCACATTCCTTGAAAGTGTCATATATG 8504 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 || || || |||||| | ||||| | || || |||||| Sbjct 8505 CCTTCAATGCTATCACCTTTCATGCATATCAGGAAGCAGCTA 8546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667247381228560