Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq293582 131 2e-25
seq294625 127 3e-24
seq161111 98.7 1e-15
seq180108 96.9 5e-15
>seq293582
Length=2029
Score = 131 bits (144), Expect = 2e-25
Identities = 407/621 (66%), Gaps = 8/621 (1%)
Strand=Plus/Plus
Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118
||||| || ||||||||||||||||| || || || || || ||||||||||| |||
Sbjct 1291 ATCAAGCACGCGAAATCGCAGTGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAAC 1350
Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGA 42177
|| || || ||||| ||||| ||||| || ||||| || || | |||| || ||| ||
Sbjct 1351 GTTAGGCCCGGCATCAGGCCGCGCTTCTTGAGCCAGAAGAT-GGCGCAGAAGCTTCCGGA 1409
Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 42237
|||||||| || || || || ||||| | | || | |||| | | | | | |
Sbjct 1410 GAAGAAGATGCCCTCGACACAGGCGAAGGCGACGA-TC-CGCTCCGCGAAGGACTCGGAC 1467
Query 42238 ATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295
|| ||||| | ||||| | ||||||| | | || || || || || | |
Sbjct 1468 CCGTCGATCCAGCGGAGGGCCCACTGGGCCTTCCGCTGGATGCAGGGGATGGTCTCCACG 1527
Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355
|| | || || ||| || || || || || | || | || | | || ||
Sbjct 1528 GCGTGGAACAGCCGGTTCTTCTCGTTGGAGTCCTTGATGTAGGACTCCAGGAGGAGGCTG 1587
Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415
||||| || || || ||||| || ||||| ||||| || |||||||| | |||||
Sbjct 1588 TACATCTCCGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCC 1647
Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475
| ||||| || || | || ||| | || | ||| || || || ||||| |
Sbjct 1648 GCGACCTGGACCTCCTTCATGAAGCGTCCGGCAAGATTCTCCAGGACGATGCCGTCCGAG 1707
Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTC 42535
|| ||||| || || | || || | || || | ||| ||| | | | | ||
Sbjct 1708 GCGGCAAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCG-CCGTCGGTCAACGACTC 1766
Query 42536 CAATCATTGAT-ATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594
| || | | || | |||| || |||||||| |||||||||| || ||||| ||
Sbjct 1767 CCATTGGCGCTGGTCCTGCGATAGGTCGACTTCTTCAGCCGTCCAAAACGAGGCTTCGGC 1826
Query 42595 CTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGG 42654
||||| ||||| | |||||| | | |||| |||||||| || |||| || ||
Sbjct 1827 TTTTTTGTACATTTCCCAGATTTGGGGGTATTTGATTGGGAACATGCAGAATCGATCGGG 1886
Query 42655 ATTTGGTGCAAGGATCGGTTC 42675
|||||| || |||| |||||
Sbjct 1887 ATTTGGGGCGAGGAGGGGTTC 1907
>seq294625
Length=4757
Score = 127 bits (140), Expect = 3e-24
Identities = 401/614 (65%), Gaps = 12/614 (2%)
Strand=Plus/Plus
Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120
||| || |||||||||||||| | || || |||| ||| || |||||||| || ||
Sbjct 4077 CAAGCAGGCGAAATCGCAGTGTAATCCTTCGTCTCGTGAAATCAACTCGTTGGAGAAGGT 4136
Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAA 42179
| ||| ||||| | || || || || | ||| || |||| |||| || ||| || |
Sbjct 4137 CAATCCAGGCATCAAACCGCGTTTCTTCAACCAGAAGATAG-CGCAGAAGCTTCCCGAGA 4195
Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC--TGTC 42237
|||| || ||||| || || |||||||| | | ||| || || | | | |
Sbjct 4196 AGAATATCCCTTCGACGCAAGCGAAGGCAAT--GATACGTTCCGCAAACGACTCCGAGCC 4253
Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297
|| |||||| | ||||||| ||||||||| | || ||||| || || || | ||
Sbjct 4254 ATCGATCCACCTCATCGCCCAATTGGCCTTCTTCTGGACGCAAGGAATGGTCTCCACAGC 4313
Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357
||| || | || || || || || | || || |||| | | || ||
Sbjct 4314 GCGAAACAGCCTCATCTTGTCGTTGGAGTCCTTGATGTAGGTCTCGAGGAGCAAGCTGTA 4373
Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417
||| || || |||||||| || || || ||||| |||||||||||| | |||||||
Sbjct 4374 CATCTCGGAGTGAATGTTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGAGCCTCGGC 4433
Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477
|| || || ||| | || | | | |||| ||||| || |||||||| |||
Sbjct 4434 GACTTGAACCTCTTTCATGAACCTTCCGGCTAGGTTTTCCAATACGATTCCGTCGGAGGC 4493
Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCA 42537
|| || || || | || || | || || | | |||| ||| | | | | |||
Sbjct 4494 GGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGTCGTTCG-CCGTCGGTGAGGGAGTCCC 4552
Query 42538 A---TCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594
| | ||| || | || | ||| || || || | ||||| || || ||||| ||
Sbjct 4553 AGTGGCGTTG--GTCCTGTGACAAATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCGGC 4610
Query 42595 CTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGG 42654
||| || ||||| | ||| || | | | || |||| ||||| ||| ||||||| ||
Sbjct 4611 CTTCTTGTACATTTCCCAAATCTGAGGGTAGCGAATAGGGAACATACAGAATCTATCGGG 4670
Query 42655 ATTTGGTGCAAGGA 42668
|| || |||||||
Sbjct 4671 GTTAGGAGCAAGGA 4684
>seq161111
Length=12134
Score = 98.7 bits (108), Expect = 1e-15
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237
||||| || || | || | ||| || | ||| | || | ||||||||||||||| |||
Sbjct 5271 CCTCCTTGGTCAACATAACGAGCTGTATCATTGAAGACACGCAACATTGGAATAATGCCA 5212
Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297
||||||| ||||| || || || || |||||| | | ||| ||||| || ||
Sbjct 5211 TTGGATGTGCCATTTGTTCCACGTATGTAACTTCCAGTTGAACGGATATTATGAACAGAG 5152
Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357
| ||| ||||| ||||| ||| ||| | || ||| || || || ||||| |||
Sbjct 5151 ACACCAATTCCTCCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTGTCATATATG 5092
Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399
|| || || |||||||| ||||| | ||||| ||||||
Sbjct 5091 CCTTCAATGCTATCATCTTTCATGCATATCAGAAAGCAGCTA 5050
>seq180108
Length=14591
Score = 96.9 bits (106), Expect = 5e-15
Identities = 155/222 (70%), Gaps = 3/222 (1%)
Strand=Plus/Plus
Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237
||||| || || | || | || || | ||| | || | ||||||||||||||| |||
Sbjct 8328 CCTCCTTGGTCAACATAACGGGCAGTATCATTGAAGACACGCAACATTGGAATAATGCCA 8387
Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297
||||||| |||||| || || || || |||||| | ||||||||||| || ||
Sbjct 8388 TTGGATGTACCATTTGTTCCACGTATGTAACTTCCAGTTGCACGAATATTATGAACAGAG 8447
Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357
| ||| ||||| ||||| ||| ||| | || ||| || || || ||||| |||
Sbjct 8448 ACACCAATTCCTCCTGC---TTTGCTGATAACAGCACATTCCTTGAAAGTGTCATATATG 8504
Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399
|| || || |||||| | ||||| | || || ||||||
Sbjct 8505 CCTTCAATGCTATCACCTTTCATGCATATCAGGAAGCAGCTA 8546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 667247381228560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |