Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq284040 95.1 1e-14
seq156932 93.3 4e-14
seq277754 89.7 5e-13
seq25275 82.4 8e-11
>seq284040
Length=2693
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||| | || |||| ||| | ||| | || || || || || |||||||||||| |
Sbjct 985 CCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCC 926
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || || ||||||||| || || || || |||||| ||| ||||| || || ||
Sbjct 925 AAAGTCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGG 866
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||| ||||| ||| || || | | || | |||||| | | ||| ||
Sbjct 865 ATTCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCACC 806
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | ||| || |||||||| || || ||||| || |||||
Sbjct 805 TCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 759
>seq156932
Length=6713
Score = 93.3 bits (102), Expect = 4e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088
||| |||||||||||||| || |||||| || ||||| || || || |||||||| ||
Sbjct 4056 GTCCTCGAGTTGTTTACCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATGCCTTCCTT 4115
Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148
||| || || || | | || | ||||| | | ||||||||||| ||| |
Sbjct 4116 GTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTTTCTACTTCAAGAGTGAT 4175
Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| ||||||||||| || || ||||| ||||||||
Sbjct 4176 GGTTTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 4211
>seq277754
Length=2847
Score = 89.7 bits (98), Expect = 5e-13
Identities = 137/195 (70%), Gaps = 9/195 (5%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
||||| || ||||| |||||||| ||| | || || ||| ||||||||||| ||
Sbjct 2774 GTAGACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCCTCGAGTTGTTTTCCG 2715
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
|| |||| || |||||||| || || || |||||||| ||||||| ||| ||| |
Sbjct 2714 GCGAAGATGAGCCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCGG--CTTTCACGTTGT 2657
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
|| || ||||| | || || || || | || | ||||||||||| | |||
Sbjct 2656 AGATG-------GTGTCGGAGGACTCAACCTCCAGCGTTATGGTCTTGCCGGTTAGGGTT 2604
Query 143168 TTTACGAATATTTGC 143182
|| ||||| || |||
Sbjct 2603 TTCACGAAGATCTGC 2589
>seq25275
Length=8276
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| |||| |||||| | ||| || |||| || || || || ||||||||||||||| |
Sbjct 5245 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCC 5186
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| |||| ||| ||||| || || || ||| |||||| | ||||| || || ||
Sbjct 5185 AAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 5126
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| || || ||||| ||||| || | | || | ||||||| | || |||
Sbjct 5125 ATACCCTCCTTGTCTTGGATTTTCGCCTTCACGTTATCGATAGTGTCCGAGCTCTCGACT 5066
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | || | || || || || | ||||| || || |||||||||
Sbjct 5065 TCCAACGTGATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCATA 5018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 504074312221920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |