Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq293582 168 1e-36
seq294625 143 4e-29
>seq293582
Length=2029
Score = 168 bits (186), Expect = 1e-36
Identities = 582/888 (66%), Gaps = 41/888 (5%)
Strand=Plus/Minus
Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055
|||| || |||| || | | || ||||||||||||||||| || | ||||| ||||
Sbjct 1870 TGTTCCCAATCAAATACCCCCAAATCTGGGAAATGTACAAAAAAGCCGAAGCCTCGTTTT 1811
Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115
|||||| ||||| ||||| || || |||||| | | | |||||| ||| ||||| |
Sbjct 1810 GGACGGCTGAAGAAGTCGACCTATCGCAGGACCAGCGCCAATGGGAG--TCG-TTGACCG 1754
Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175
| ||||| | || || | ||| | | ||||||||||||| ||| || || ||||
Sbjct 1753 ACGGCGAGCGCCACTTCATCACCCACGTCCTCGCCTTCTTTGCCGCCTCGGACGGCATCG 1694
Query 125176 TCAACGACAATCTGTTGAC--ACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG 125231
|| || |||| ||| | ||| ||| | ||| | | ||| | | |||| | ||
Sbjct 1693 TCCTGGAGAATC--TTGCCGGACGCTTC-ATGAAG-GAGGTCCAGGTCGCGGAGGCG-CG 1639
Query 125232 TG-CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290
| ||| ||||| ||||| ||| || |||||| | |||||||| |||||| ||
Sbjct 1638 CGCCTTCTACGGGTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACAGCCTCCT 1579
Query 125291 GATTGACATGTACATTCGCGATCCGCAACG-TAAACACATGCTCTTTAACGCAATCGACA 125349
| || |||| || | | ||||| || || ||| || |||| | || |
Sbjct 1578 CCTGGAGTCCTACA-TCAAGGACTCCAACGAGAAGAACCGGCTGTTCCACGCCGTGGAGA 1520
Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT 125409
| | || | || | ||||| || |||| | || |||||||| | | ||
Sbjct 1519 CCATCCCCTGCATCCAGCGGAAGGCCCAGTGGGCCCTCCGCTGGATCGACGGGTCCGAG- 1461
Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTA 125469
|| | ||| || | | || || |||||| || |||||||||||||| || || |
Sbjct 1460 --TCCTTCGCGGAGCGGATCGTCGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCCGGAA 1403
Query 125470 G-TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528
| || ||| |||||||| ||||||||||||||||| || ||||| || || ||| |
Sbjct 1402 GCTTCTGC-GCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCGGGCCTAACGTTCTCC 1344
Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC---CAT--TCTACTGT 125583
||||| || || || | ||||| ||||| ||||| || || || | | ||||| ||
Sbjct 1343 AACGAATTGATCTCGAGGGACGAAGGCCTGCACTGCGATTTCGCGTGCTTGATCTACGGT 1284
Query 125584 TTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAA 125643
|| || || || | ||||| || ||| | || |||||
Sbjct 1283 TT-------------GTTGAACATGAAGCT-GAGCGAGGAGCGGGTTAAGAAGATTGTGG 1238
Query 125644 CCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTG 125703
| || || ||| ||| || |||||| | ||| | || ||| | || | |
Sbjct 1237 CGGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGTGGTCTGGTGG 1178
Query 125704 GCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACG 125763
| |||||| || | || ||| || ||| || ||||| ||||| ||||| | || |
Sbjct 1177 GGATGAACGGCGATCTGATGAGCACGTATATCGAGTTCGTGGCGGATCGGTTGTTGGTGG 1118
Query 125764 AGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCAT-GACCAGCATA 125822
|||| | | ||||| ||||| | ||||||| ||||||| || || | | ||
Sbjct 1117 CGTTGGGGTACGGGAAGATGTACAAGGTGCAGAATCCGTTTGATTGGATGGAGCTG-ATT 1059
Query 125823 TCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870
|| | |||| ||||| ||||| |||||||||| ||| | ||||||
Sbjct 1058 TCGTTGCAGGGGAAGACGAACTTCTTCGAGAAGAGGGTTGGGGAGTAC 1011
>seq294625
Length=4757
Score = 143 bits (158), Expect = 4e-29
Identities = 389/582 (67%), Gaps = 14/582 (2%)
Strand=Plus/Minus
Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055
|||| || || | || | | | ||||||||||||||||| ||||| | |||||||| |
Sbjct 4654 TGTTCCCTATTCGCTACCCTCAGATTTGGGAAATGTACAAGAAGGCCGAAGCCTCCTTCT 4595
Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115
|||| | ||| ||||||||| |||| |||||| | | ||| ||||| | || |
Sbjct 4594 GGACCGCCGAGGAGGTCGATTTGTCACAGGACCAACGCCACTGG--GACTC-CCTCACCG 4538
Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175
| || ||| | || || | ||| | | |||||||| |||| |||||| |||||||
Sbjct 4537 ACGGCGAACGACACTTCATCACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCG 4478
Query 125176 TCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTC-CAGAGGTGTCGTGC 125234
| || || || | | ||| ||||| | | | || | |||| ||||||
Sbjct 4477 TATTGGAAAACCTAGCCGGAAGGTTCATGAAAGAGGT-TCAAGTCGCCGAGG-CTCGTGC 4420
Query 125235 TTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293
||| ||||||||||| ||| || |||||| | ||||| || |||||| || |
Sbjct 4419 TTTCTACGGATTCCAGATCGCAATCGAGAACATTCACTCCGAGATGTACAGCTTGCTCCT 4360
Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACA-CATGCTCTTTAACGCAATCGACACGG 125352
|| | |||| || | | ||||| || | | ||| ||| ||| | || ||
Sbjct 4359 CGAGACCTACA-TCAAGGACTCCAACGACAAGATGAGGCTGTTTCGCGCTGTGGAGACCA 4301
Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTT 125412
| || | | | || ||||| | |||| ||| |||||||||||| | || |
Sbjct 4300 TTCCTTGCGTCCAGAAGAAGGCCAATTGGGCGATGAGGTGGATCGATGGCTCGGAG---T 4244
Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-T 125471
||| || || | | | || ||||| ||| || || || ||||| ||||| || |
Sbjct 4243 CGTTTGCGGAACGTATCATTGCCTTCGCTTGCGTCGAAGGGATATTCTTCTCGGGAAGCT 4184
Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531
| ||| || ||||| ||| | ||||| ||||| | ||||| ||| |||| | |||
Sbjct 4183 TCTGC-GCTATCTTCTGGTTGAAGAAACGCGGTTTGATGCCTGGATTGACCTTCTCCAAC 4125
Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573
||||| || || |||||||| || ||||||| || || |||
Sbjct 4124 GAGTTGATTTCACGAGACGAAGGATTACACTGCGATTTCGCC 4083
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 736761927384560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |