Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq293582 168 1e-36 seq294625 143 4e-29 >seq293582 Length=2029 Score = 168 bits (186), Expect = 1e-36 Identities = 582/888 (66%), Gaps = 41/888 (5%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || |||| || | | || ||||||||||||||||| || | ||||| |||| Sbjct 1870 TGTTCCCAATCAAATACCCCCAAATCTGGGAAATGTACAAAAAAGCCGAAGCCTCGTTTT 1811 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||||| ||||| ||||| || || |||||| | | | |||||| ||| ||||| | Sbjct 1810 GGACGGCTGAAGAAGTCGACCTATCGCAGGACCAGCGCCAATGGGAG--TCG-TTGACCG 1754 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||||| | || || | ||| | | ||||||||||||| ||| || || |||| Sbjct 1753 ACGGCGAGCGCCACTTCATCACCCACGTCCTCGCCTTCTTTGCCGCCTCGGACGGCATCG 1694 Query 125176 TCAACGACAATCTGTTGAC--ACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG 125231 || || |||| ||| | ||| ||| | ||| | | ||| | | |||| | || Sbjct 1693 TCCTGGAGAATC--TTGCCGGACGCTTC-ATGAAG-GAGGTCCAGGTCGCGGAGGCG-CG 1639 Query 125232 TG-CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 | ||| ||||| ||||| ||| || |||||| | |||||||| |||||| || Sbjct 1638 CGCCTTCTACGGGTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACAGCCTCCT 1579 Query 125291 GATTGACATGTACATTCGCGATCCGCAACG-TAAACACATGCTCTTTAACGCAATCGACA 125349 | || |||| || | | ||||| || || ||| || |||| | || | Sbjct 1578 CCTGGAGTCCTACA-TCAAGGACTCCAACGAGAAGAACCGGCTGTTCCACGCCGTGGAGA 1520 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT 125409 | | || | || | ||||| || |||| | || |||||||| | | || Sbjct 1519 CCATCCCCTGCATCCAGCGGAAGGCCCAGTGGGCCCTCCGCTGGATCGACGGGTCCGAG- 1461 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTA 125469 || | ||| || | | || || |||||| || |||||||||||||| || || | Sbjct 1460 --TCCTTCGCGGAGCGGATCGTCGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCCGGAA 1403 Query 125470 G-TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 | || ||| |||||||| ||||||||||||||||| || ||||| || || ||| | Sbjct 1402 GCTTCTGC-GCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCGGGCCTAACGTTCTCC 1344 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC---CAT--TCTACTGT 125583 ||||| || || || | ||||| ||||| ||||| || || || | | ||||| || Sbjct 1343 AACGAATTGATCTCGAGGGACGAAGGCCTGCACTGCGATTTCGCGTGCTTGATCTACGGT 1284 Query 125584 TTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAA 125643 || || || || | ||||| || ||| | || ||||| Sbjct 1283 TT-------------GTTGAACATGAAGCT-GAGCGAGGAGCGGGTTAAGAAGATTGTGG 1238 Query 125644 CCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTG 125703 | || || ||| ||| || |||||| | ||| | || ||| | || | | Sbjct 1237 CGGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGTGGTCTGGTGG 1178 Query 125704 GCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACG 125763 | |||||| || | || ||| || ||| || ||||| ||||| ||||| | || | Sbjct 1177 GGATGAACGGCGATCTGATGAGCACGTATATCGAGTTCGTGGCGGATCGGTTGTTGGTGG 1118 Query 125764 AGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCAT-GACCAGCATA 125822 |||| | | ||||| ||||| | ||||||| ||||||| || || | | || Sbjct 1117 CGTTGGGGTACGGGAAGATGTACAAGGTGCAGAATCCGTTTGATTGGATGGAGCTG-ATT 1059 Query 125823 TCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || | |||| ||||| ||||| |||||||||| ||| | |||||| Sbjct 1058 TCGTTGCAGGGGAAGACGAACTTCTTCGAGAAGAGGGTTGGGGAGTAC 1011 >seq294625 Length=4757 Score = 143 bits (158), Expect = 4e-29 Identities = 389/582 (67%), Gaps = 14/582 (2%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || || | || | | | ||||||||||||||||| ||||| | |||||||| | Sbjct 4654 TGTTCCCTATTCGCTACCCTCAGATTTGGGAAATGTACAAGAAGGCCGAAGCCTCCTTCT 4595 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| ||||||||| |||| |||||| | | ||| ||||| | || | Sbjct 4594 GGACCGCCGAGGAGGTCGATTTGTCACAGGACCAACGCCACTGG--GACTC-CCTCACCG 4538 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | || ||| | || || | ||| | | |||||||| |||| |||||| ||||||| Sbjct 4537 ACGGCGAACGACACTTCATCACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCG 4478 Query 125176 TCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTC-CAGAGGTGTCGTGC 125234 | || || || | | ||| ||||| | | | || | |||| |||||| Sbjct 4477 TATTGGAAAACCTAGCCGGAAGGTTCATGAAAGAGGT-TCAAGTCGCCGAGG-CTCGTGC 4420 Query 125235 TTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||||||||| ||| || |||||| | ||||| || |||||| || | Sbjct 4419 TTTCTACGGATTCCAGATCGCAATCGAGAACATTCACTCCGAGATGTACAGCTTGCTCCT 4360 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACA-CATGCTCTTTAACGCAATCGACACGG 125352 || | |||| || | | ||||| || | | ||| ||| ||| | || || Sbjct 4359 CGAGACCTACA-TCAAGGACTCCAACGACAAGATGAGGCTGTTTCGCGCTGTGGAGACCA 4301 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTT 125412 | || | | | || ||||| | |||| ||| |||||||||||| | || | Sbjct 4300 TTCCTTGCGTCCAGAAGAAGGCCAATTGGGCGATGAGGTGGATCGATGGCTCGGAG---T 4244 Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-T 125471 ||| || || | | | || ||||| ||| || || || ||||| ||||| || | Sbjct 4243 CGTTTGCGGAACGTATCATTGCCTTCGCTTGCGTCGAAGGGATATTCTTCTCGGGAAGCT 4184 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 | ||| || ||||| ||| | ||||| ||||| | ||||| ||| |||| | ||| Sbjct 4183 TCTGC-GCTATCTTCTGGTTGAAGAAACGCGGTTTGATGCCTGGATTGACCTTCTCCAAC 4125 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 ||||| || || |||||||| || ||||||| || || ||| Sbjct 4124 GAGTTGATTTCACGAGACGAAGGATTACACTGCGATTTCGCC 4083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 736761927384560