Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq25275 96.9 2e-15
seq284040 95.1 9e-15
seq228143 91.5 1e-13
seq156932 87.8 1e-12
>seq25275
Length=8276
Score = 96.9 bits (106), Expect = 2e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| ||||| || | | ||| || ||||||||||| || || |||||||||||||||
Sbjct 5245 CCGCCTCTTAAACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCC 5186
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | |||| || | || ||||| || | ||||| | || ||||| |||
Sbjct 5185 AAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 5126
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| || || ||||| ||||| ||| || | || || || || | || ||
Sbjct 5125 ATACCCTCCTTGTCTTGGATTTTCGCCTTCACGTTATCGATAGTGTCCGAGCTCTCGACT 5066
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || || |||||||| ||||| || ||||| ||||| |||||||||
Sbjct 5065 TCCAACGTGATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCATA 5018
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||||||||||| | || || |||||||| || || || || |||||||| ||
Sbjct 5473 CCACCTCTCAATCGAAGCACCAAGTGAAGGGTTGATTCCTTCTGAATGTTGTAGTCTGCA 5414
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | | || || | || ||||| || | ||||| | ||||||||| |||
Sbjct 5413 AGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGG 5354
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
||||| ||||| || ||||| ||| || | || ||||| ||| | || ||
Sbjct 5353 ATTCCCTCTTTATCTTGGATTTTCGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAACT 5294
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| | || ||||| || || |||| ||| || ||||| || ||||||
Sbjct 5293 TCCAGTGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAGATCTGCATA 5246
>seq284040
Length=2693
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| || ||||| | | ||| | ||| | ||||| || || || ||||||||||||
Sbjct 985 CCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCC 926
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | || ||||||| | || ||||| ||| | |||||||| || ||||| |||
Sbjct 925 AAAGTCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGG 866
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||| ||||| ||| || ||| || | || || || ||| |||| ||
Sbjct 865 ATTCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCACC 806
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || ||||| || |||| || || || || || |||||
Sbjct 805 TCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 759
>seq228143
Length=6931
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || |||||||| || || || || |||||||| ||| || ||| |||||||
Sbjct 2849 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCC 2790
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || || || ||| | || | | || ||||| || || |||||||||||
Sbjct 2789 AGCTGCTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGG 2730
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| ||| ||| || | || ||||| ||| |||| || ||||| || ||||| ||
Sbjct 2729 ATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAACTTCTAATGTGATGGTCTTT 2670
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| |||| ||||| |||||||| ||||||
Sbjct 2669 CCGGTCAAGGTTTTCACAAAAATCTGCATA 2640
Score = 82.4 bits (90), Expect = 5e-11
Identities = 141/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
||||||||| || || || || ||||||||||| | | | | | ||||| |||||
Sbjct 3300 ATGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCCAACGTACGCCCATCTTCCAATTG 3241
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279
|| ||||| | ||||| | || ||||| ||| || ||||| || || || ||
Sbjct 3240 CTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATGCCTTCCTTATCCTGGATCTT 3181
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
||| ||| | || ||||| || | | || || || || || ||||| || || ||
Sbjct 3180 AGCCTTCACATTGTCAATGGTGTCCGAACTCTCGACCTCCAAAGTGATGGTCTTTCCAGT 3121
Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364
|| || || |||||||| ||||||
Sbjct 3120 CAACGTCTTAACAAAAATCTGCATA 3096
>seq156932
Length=6713
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| || ||||| || | || | ||| ||||| || || || || |||||||||||
Sbjct 3757 CCTCCCCTCAACCTCAGCACAAGATGCAGGGTCGATTCCTTCTGGATGTTGTAATCCGCA 3816
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| | | | | ||||| | ||||| || || | || | | ||||||||| |||
Sbjct 3817 AGAGTCCGCCCATCTTCCAGCTGTTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGG 3876
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||| ||||| ||| ||| || || | || |||||||| | || ||
Sbjct 3877 ATTCCTTCCTTGTCTTGAATCTTGGCTTTCACGTTGTCGATGGTATCCGAGCTCTCGACT 3936
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || || || || || || || || ||||| || ||||| ||||||
Sbjct 3937 TCCAAAGTGATCGTCTTCCCAGTGAGGGTTTTGACGAAAATCTGCATA 3984
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 360131491545546
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |