Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq25275 93.3 3e-14 >seq25275 Length=8276 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || |||||||| || || |||||||| |||| || ||||||| Sbjct 5227 ACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCCAAAGTGCGACCGTCCTCG 5168 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || ||| | || | |||||||| || ||| | ||||| ||||| Sbjct 5167 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGG 5108 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | ||| ||| || | || ||| ||| | || |||||||| Sbjct 5107 ATTTTCGCCTTCACGTTATCGATAGTGTC-CGAGCTCTCGACTTCCAACGTGATGGTTTT 5049 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||||| ||||||||||| |||||||| Sbjct 5048 CCCTGTTAGGGTTTTGACAAAGATTTGCAT 5019 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||||||||| || || || |||||||| | || | | ||||| ||||| || || Sbjct 6127 GTAGACTCCTTCTGGATGTTATAATCCGCAAGAGTCCTTCCATCCTCAAGCTGCTTCCCA 6068 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| || |||||||||||| || | ||||| ||||| ||| ||| ||| Sbjct 6067 GCAAAAATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGAATCTTCGCTTTC 6008 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | ||| || || | |||| || | || ||||| || ||||| || || Sbjct 6007 ACATTGTCGATCGTGTCCGAACTCTCCACCTCCAGCGTGATGGTCTTCCCTGTCAACGTC 5948 Query 19025 TTGACAAAAATTTGCAT 19041 || ||||| || ||||| Sbjct 5947 TTAACAAAGATCTGCAT 5931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412228865760964