Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq228143 131 4e-25
seq156932 131 4e-25
seq25275 129 1e-24
seq284040 122 2e-22
seq145598 114 3e-20
seq294625 113 1e-19
seq259261 109 1e-18
seq276382 100 7e-16
seq277754 93.3 1e-13
seq293582 87.8 4e-12
>seq228143
Length=6931
Score = 131 bits (144), Expect = 4e-25
Identities = 159/214 (74%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || ||||| | ||||| ||||||||||| ||||| |||| || || || || ||
Sbjct 3537 AAGCACAAGATGCAGGGTAGACTCTTTCTGAATGTTATAATCAGCAAGTGTCCTCCCATC 3478
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| | || || || ||||| || | |||||| ||||| || || || || || || ||
Sbjct 3477 TTCCAACTGCTTCCCTGCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCCTCCTTGTC 3418
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT-CTACCTCTAGTGTAATAG 104525
|| |||||||| || ||||| || | ||||| | || || | ||||| || || || |
Sbjct 3417 TTGGATCTTTGCCTTCACATTATCAATCGTATC-CGAGCTTTCCACCTCCAGAGTGATCG 3359
Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||| ||||| | || || || |||||||||||
Sbjct 3358 TCTTTCCAGTCAACGTCTTAACGAATATCTGCAT 3325
>seq156932
Length=6713
Score = 131 bits (144), Expect = 4e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || || || || || ||||| | |||||||| ||||| || || ||||| ||
Sbjct 4243 GTGGACTCCTTTTGGATGTTGTAGTCGGCTAGAGTTCGGCCGTCCTCGAGCTGTTTACCG 4302
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || |||||||| ||||| ||||| || ||||| || || || ||||| || ||
Sbjct 4303 GCAAAGATCAGCCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCTTGGATCTTGGCCTTG 4362
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | |||||| | || ||||| || || || ||||| ||||| || ||
Sbjct 4363 ACGTTGTCAATTGTATCGGAACTCTCGACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTC 4422
Query 104543 TTTACAAATATCTGCAT 104559
|| || |||||||||||
Sbjct 4423 TTAACGAATATCTGCAT 4439
Score = 109 bits (120), Expect = 1e-18
Identities = 154/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | || || || ||||| ||||| || || | ||||| | ||| ||
Sbjct 3543 AAGAACAAGGTGAAGAGTCGACTCCTTCTGGATATTGTAATCCGCAAGAGTACGACCATC 3602
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| | || || || || || || | |||||| || || || || || ||||| |||||
Sbjct 3603 CTCCAACTGCTTCCCTGCGAATATCAACCTCTGCTGGTCTGGTGGAATCCCTTCCTTATC 3662
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525
|||||||||||| || ||||| || | |||||| | || | || ||||| | || || |
Sbjct 3663 CTGAATCTTTGCCTTCACATTGTCAATGGTATC-CGAGCTCTCCACCTCCAAGGTGATCG 3721
Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||| || || | || || || || ||||||||
Sbjct 3722 TCTTCCCGGTTAAAGTCTTGACGAAAATCTGCAT 3755
>seq25275
Length=8276
Score = 129 bits (142), Expect = 1e-24
Identities = 168/231 (73%), Gaps = 1/231 (0%)
Strand=Plus/Minus
Query 104330 ATTCCC-CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTC 104388
|||||| || | || | ||| || | ||| | ||||| || ||||| || ||||| ||
Sbjct 6161 ATTCCCACCGCGAAGACGAAGAACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAATC 6102
Query 104389 AGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGG 104448
| ||||| || || || || || || || ||||||||||| |||||||| ||||| ||
Sbjct 6101 CGCAAGAGTCCTTCCATCCTCAAGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGG 6042
Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508
|| || || || || ||||||||||| ||||| ||||| || | || || | ||
Sbjct 6041 TGGGATCCCCTCCTTGTCCTGAATCTTCGCTTTCACATTGTCGATCGTGTCCGAACTCTC 5982
Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || ||||| || || | || || ||||| ||||||||
Sbjct 5981 CACCTCCAGCGTGATGGTCTTCCCTGTCAACGTCTTAACAAAGATCTGCAT 5931
Score = 123 bits (136), Expect = 6e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
||||| | ||| | || ||||| ||||| ||||||||||| | || || | || ||
Sbjct 5914 AGTACCAAATGCAGAGTCGATTCCTTCTGGATATTATAGTCGGCAAGCGTACGGCCATCC 5855
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || || || || ||||| || |||||||| || || || || || || || ||||||
Sbjct 5854 TCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTATCC 5795
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|| ||||| ||||| || || || | ||| ||| | || || || | ||| ||||||
Sbjct 5794 TGGATCTTCGCTTTAACGTTGTCAATGGTGTCGGAACTCTCGACTTCCAATGTGATAGTC 5735
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
|| || || | || || ||||| |||||||||
Sbjct 5734 TTCCCGGTTAAGGTCTTCACAAAGATCTGCATT 5702
>seq284040
Length=2693
Score = 122 bits (134), Expect = 2e-22
Identities = 157/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | || || || ||||| || || || || | ||||| | || ||
Sbjct 1199 AAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCCGCCAGAGTCCGGCCATC 1140
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| || || ||||| ||||| || | |||||| || || || || || || ||||||||
Sbjct 1139 TTCCAGCTGCTTTCCGGCAAATATCAACCTCTGCTGGTCCGGTGGAATCCCCTCTTTATC 1080
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525
||||||||| || || ||||| || | |||||| || | || ||||| || ||||| |
Sbjct 1079 CTGAATCTTGGCCTTGACATTATCGATCGTATCGG-AGCTCTCCACCTCCAGAGTAATCG 1021
Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||| || || | || || || |||||||||||
Sbjct 1020 TCTTCCCGGTCAACGTCTTCACGAATATCTGCAT 987
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || || | || || || ||||| || || || || ||||| || || || ||
Sbjct 988 ATCCCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCG 929
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
| | ||| || |||||||| || || || || || || || | | ||| || || ||
Sbjct 928 GCCAAAGTCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGT 869
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| |||||||| || ||||||||||| || || || || || | || ||| |||
Sbjct 868 GGGATTCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCC 809
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| | || || || || || || | || || || || ||||||||
Sbjct 808 ACCTCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 759
>seq145598
Length=10865
Score = 114 bits (126), Expect = 3e-20
Identities = 108/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390
|||| || || || || || || ||||| | ||| ||||||||||| || || |||||||
Sbjct 9508 TTCCTCCCCTCAGTCTTAGAACAAGATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAG 9567
Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450
|| |||| || || |||| ||| || ||||||||||| | |||||||||||| ||||
Sbjct 9568 CAAGTGTTCGTCCATCCTCTAATTGCTTGCCAGCAAAAATCAACCTCTGTTGATCTGGAG 9627
Query 104451 GTATTCCTTCTTTATCCT 104468
| || || ||||| ||||
Sbjct 9628 GGATACCCTCTTTGTCCT 9645
>seq294625
Length=4757
Score = 113 bits (124), Expect = 1e-19
Identities = 235/346 (68%), Gaps = 8/346 (2%)
Strand=Plus/Minus
Query 268945 TTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAAT 269004
||| |||||||||||||| || || || || ||||| || ||||||||||| | | |
Sbjct 4419 TTTCTACGGATTCCAGATCGCAATCGAGAACATTCACTCCGAGATGTACAGCTTGCTCCT 4360
Query 269005 AGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATGAGAACTAT 269064
|| || || || | || |||||| |||| || || ||| || || || ||
Sbjct 4359 CGAGACCTACATCAAGGACTCCAACGACAAGATGAGGCTGTTTCGCGCTGTGGAGACCAT 4300
Query 269065 GGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGCGC---C 269121
|| || || || | | ||||| ||| ||||| |||| || || |
Sbjct 4299 TCCTTGCGTCCAGAAGAAGGCCAATTGGGCGATGAGGTGGAT---CGATGGCTCGGAGTC 4243
Query 269122 TTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGT-CTT 269180
| | ||| | | |||| || || || ||||| |||||||| ||||| |||
Sbjct 4242 GTTTGCGGAACGTATCATTGCCTTCGCTTGCGTCGAAGGGATATTCTTCTCGGGAAGCTT 4183
Query 269181 TTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACG 269240
||| |||||||| |||||||||||| | || | ||||| ||||| || ||||| ||||
Sbjct 4182 CTGC-GCTATCTTCTGGTTGAAGAAACGCGGTTTGATGCCTGGATTGACCTTCTCCAACG 4124
Query 269241 AATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTT 269286
| ||||| | |||||||| ||||||||||| ||||| || ||
Sbjct 4123 AGTTGATTTCACGAGACGAAGGATTACACTGCGATTTCGCCTGCTT 4078
>seq259261
Length=7884
Score = 109 bits (120), Expect = 1e-18
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| | ||| || || ||||| || || ||||| ||
Sbjct 2572 GTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCCGTCCTCGAGCTGTTTCCCG 2513
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| || || || || || ||||| || ||||| ||||| || ||
Sbjct 2512 GCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2453
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | || ||| | ||| ||||| | || || ||||| || || || |||
Sbjct 2452 ACGTTGTCGATCGTGTCGGAGGATTCGACCTCCAACGTGATCGTCTTCCCCGTTAGGGTT 2393
Query 104543 TTTACAAATATCTGCATTTT 104562
|| || || |||||||||||
Sbjct 2392 TTCACGAAGATCTGCATTTT 2373
>seq276382
Length=2823
Score = 100 bits (110), Expect = 7e-16
Identities = 153/214 (71%), Gaps = 3/214 (1%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || ||||| | || || || |||||||| ||||| |||| || | || || ||
Sbjct 2360 AAGCACAAGATGCAG-GTGGACTCCTTCTGAATGTTATAATCAGCAAGTATCCTCCCATC 2302
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| | || || | ||| || | |||||||||||| | || || || || |||||
Sbjct 2301 TTCCAACTGCTTCCGTACAACGATCACCCTCTGTTGATCCAGTGGGATCCCCTCCTTATC 2242
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT-CTACCTCTAGTGTAATAG 104525
|| ||||| || || ||||| || | ||||| | || || | ||||| || || || |
Sbjct 2241 TTGGATCTTAGCCTTCACATTATCAATCGTATC-CGAGCTTTCCACCTCCAGAGTGATCG 2183
Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||| ||||| | || || || |||||||||||
Sbjct 2182 TCTTTCCAGTCAACGTCTTAACGAATATCTGCAT 2149
Score = 93.3 bits (102), Expect = 1e-13
Identities = 132/186 (71%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409
||| ||||| | || || || ||||| || || ||||| | || |||| || ||||
Sbjct 1902 TACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTTCGGCCATCTTG 1843
Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469
|| || ||||| ||||| || | ||||| ||| || || || || || || ||||| ||
Sbjct 1842 AAGCTGCTTTCCGGCAAATATCAACCTCTATTGGTCTGGTGGGATGCCCTCCTTATCTTG 1783
Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529
||||||||||| ||||| || | ||| || | || ||||| | || || |||||
Sbjct 1782 GATCTTTGCTTTCACATTGTCAATGGTGTCTGAACTCTCGACCTCCAAAGTTATCGTCTT 1723
Query 104530 ACCAGT 104535
|| ||
Sbjct 1722 TCCGGT 1717
>seq277754
Length=2847
Score = 93.3 bits (102), Expect = 1e-13
Identities = 142/204 (70%), Gaps = 9/204 (4%)
Strand=Plus/Minus
Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413
||||| | ||||| || || || || || ||||| | ||| ||||||||||| || |||
Sbjct 2783 AGATGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCCTCGAGT 2724
Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473
|||||||| || || || |||| || || || || || || ||||| || ||
Sbjct 2723 TGTTTTCCGGCGAAGATGAGCCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTC------- 2671
Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533
||||| || || | | ||| ||| | || ||||| || || || ||||| ||
Sbjct 2670 --GGCTTTCACGTTGTAGATGGTGTCGGAGGACTCAACCTCCAGCGTTATGGTCTTGCCG 2613
Query 104534 GTAAGTGTTTTTACAAATATCTGC 104557
|| || ||||| || || ||||||
Sbjct 2612 GTTAGGGTTTTCACGAAGATCTGC 2589
>seq293582
Length=2029
Score = 87.8 bits (96), Expect = 4e-12
Identities = 111/150 (74%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGT-CTTTTGCCGCTATCTTTTG 269196
|| || || ||| ||| || || || ||||| || || ||| ||| || ||||| ||
Sbjct 1442 GTCGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCCGGAAGCTTCTGC-GCCATCTTCTG 1384
Query 269197 GTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGA 269256
| | ||||| | ||||| ||||| || |||| ||||| ||||||||||| |||||
Sbjct 1383 GCTCAAGAAGCGCGGCCTGATGCCGGGCCTAACGTTCTCCAACGAATTGATCTCGAGGGA 1324
Query 269257 CGAAGGTTTACACTGCGACTTCGCTTGTTT 269286
|||||| | |||||||| ||||| || ||
Sbjct 1323 CGAAGGCCTGCACTGCGATTTCGCGTGCTT 1294
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1144554723227448
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