Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq228143 131 4e-25 seq156932 131 4e-25 seq25275 129 1e-24 seq284040 122 2e-22 seq145598 114 3e-20 seq294625 113 1e-19 seq259261 109 1e-18 seq276382 100 7e-16 seq277754 93.3 1e-13 seq293582 87.8 4e-12 >seq228143 Length=6931 Score = 131 bits (144), Expect = 4e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | ||||| ||||||||||| ||||| |||| || || || || || Sbjct 3537 AAGCACAAGATGCAGGGTAGACTCTTTCTGAATGTTATAATCAGCAAGTGTCCTCCCATC 3478 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | || || || ||||| || | |||||| ||||| || || || || || || || Sbjct 3477 TTCCAACTGCTTCCCTGCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCCTCCTTGTC 3418 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT-CTACCTCTAGTGTAATAG 104525 || |||||||| || ||||| || | ||||| | || || | ||||| || || || | Sbjct 3417 TTGGATCTTTGCCTTCACATTATCAATCGTATC-CGAGCTTTCCACCTCCAGAGTGATCG 3359 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| ||||| | || || || ||||||||||| Sbjct 3358 TCTTTCCAGTCAACGTCTTAACGAATATCTGCAT 3325 >seq156932 Length=6713 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || ||||| | |||||||| ||||| || || ||||| || Sbjct 4243 GTGGACTCCTTTTGGATGTTGTAGTCGGCTAGAGTTCGGCCGTCCTCGAGCTGTTTACCG 4302 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| ||||| ||||| || ||||| || || || ||||| || || Sbjct 4303 GCAAAGATCAGCCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCTTGGATCTTGGCCTTG 4362 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| | || ||||| || || || ||||| ||||| || || Sbjct 4363 ACGTTGTCAATTGTATCGGAACTCTCGACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTC 4422 Query 104543 TTTACAAATATCTGCAT 104559 || || ||||||||||| Sbjct 4423 TTAACGAATATCTGCAT 4439 Score = 109 bits (120), Expect = 1e-18 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| ||||| || || | ||||| | ||| || Sbjct 3543 AAGAACAAGGTGAAGAGTCGACTCCTTCTGGATATTGTAATCCGCAAGAGTACGACCATC 3602 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | || || || || || || | |||||| || || || || || ||||| ||||| Sbjct 3603 CTCCAACTGCTTCCCTGCGAATATCAACCTCTGCTGGTCTGGTGGAATCCCTTCCTTATC 3662 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 |||||||||||| || ||||| || | |||||| | || | || ||||| | || || | Sbjct 3663 CTGAATCTTTGCCTTCACATTGTCAATGGTATC-CGAGCTCTCCACCTCCAAGGTGATCG 3721 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || | || || || || |||||||| Sbjct 3722 TCTTCCCGGTTAAAGTCTTGACGAAAATCTGCAT 3755 >seq25275 Length=8276 Score = 129 bits (142), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 104330 ATTCCC-CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTC 104388 |||||| || | || | ||| || | ||| | ||||| || ||||| || ||||| || Sbjct 6161 ATTCCCACCGCGAAGACGAAGAACCAAATGAAGGGTAGACTCCTTCTGGATGTTATAATC 6102 Query 104389 AGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGG 104448 | ||||| || || || || || || || ||||||||||| |||||||| ||||| || Sbjct 6101 CGCAAGAGTCCTTCCATCCTCAAGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGG 6042 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || || || || || ||||||||||| ||||| ||||| || | || || | || Sbjct 6041 TGGGATCCCCTCCTTGTCCTGAATCTTCGCTTTCACATTGTCGATCGTGTCCGAACTCTC 5982 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || | || || ||||| |||||||| Sbjct 5981 CACCTCCAGCGTGATGGTCTTCCCTGTCAACGTCTTAACAAAGATCTGCAT 5931 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| | ||| | || ||||| ||||| ||||||||||| | || || | || || Sbjct 5914 AGTACCAAATGCAGAGTCGATTCCTTCTGGATATTATAGTCGGCAAGCGTACGGCCATCC 5855 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || ||||| || |||||||| || || || || || || || |||||| Sbjct 5854 TCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTATCC 5795 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| ||||| || || || | ||| ||| | || || || | ||| |||||| Sbjct 5794 TGGATCTTCGCTTTAACGTTGTCAATGGTGTCGGAACTCTCGACTTCCAATGTGATAGTC 5735 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || | || || ||||| ||||||||| Sbjct 5734 TTCCCGGTTAAGGTCTTCACAAAGATCTGCATT 5702 >seq284040 Length=2693 Score = 122 bits (134), Expect = 2e-22 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || || || | ||||| | || || Sbjct 1199 AAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCCGCCAGAGTCCGGCCATC 1140 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || ||||| ||||| || | |||||| || || || || || || |||||||| Sbjct 1139 TTCCAGCTGCTTTCCGGCAAATATCAACCTCTGCTGGTCCGGTGGAATCCCCTCTTTATC 1080 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 ||||||||| || || ||||| || | |||||| || | || ||||| || ||||| | Sbjct 1079 CTGAATCTTGGCCTTGACATTATCGATCGTATCGG-AGCTCTCCACCTCCAGAGTAATCG 1021 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || | || || || ||||||||||| Sbjct 1020 TCTTCCCGGTCAACGTCTTCACGAATATCTGCAT 987 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || | || || || ||||| || || || || ||||| || || || || Sbjct 988 ATCCCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCG 929 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | ||| || |||||||| || || || || || || || | | ||| || || || Sbjct 928 GCCAAAGTCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGT 869 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || ||||||||||| || || || || || | || ||| ||| Sbjct 868 GGGATTCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCC 809 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || || || || || | || || || || |||||||| Sbjct 808 ACCTCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 759 >seq145598 Length=10865 Score = 114 bits (126), Expect = 3e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || || || || || ||||| | ||| ||||||||||| || || ||||||| Sbjct 9508 TTCCTCCCCTCAGTCTTAGAACAAGATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAG 9567 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || |||| || || |||| ||| || ||||||||||| | |||||||||||| |||| Sbjct 9568 CAAGTGTTCGTCCATCCTCTAATTGCTTGCCAGCAAAAATCAACCTCTGTTGATCTGGAG 9627 Query 104451 GTATTCCTTCTTTATCCT 104468 | || || ||||| |||| Sbjct 9628 GGATACCCTCTTTGTCCT 9645 >seq294625 Length=4757 Score = 113 bits (124), Expect = 1e-19 Identities = 235/346 (68%), Gaps = 8/346 (2%) Strand=Plus/Minus Query 268945 TTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAAT 269004 ||| |||||||||||||| || || || || ||||| || ||||||||||| | | | Sbjct 4419 TTTCTACGGATTCCAGATCGCAATCGAGAACATTCACTCCGAGATGTACAGCTTGCTCCT 4360 Query 269005 AGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATGAGAACTAT 269064 || || || || | || |||||| |||| || || ||| || || || || Sbjct 4359 CGAGACCTACATCAAGGACTCCAACGACAAGATGAGGCTGTTTCGCGCTGTGGAGACCAT 4300 Query 269065 GGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGCGC---C 269121 || || || || | | ||||| ||| ||||| |||| || || | Sbjct 4299 TCCTTGCGTCCAGAAGAAGGCCAATTGGGCGATGAGGTGGAT---CGATGGCTCGGAGTC 4243 Query 269122 TTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGT-CTT 269180 | | ||| | | |||| || || || ||||| |||||||| ||||| ||| Sbjct 4242 GTTTGCGGAACGTATCATTGCCTTCGCTTGCGTCGAAGGGATATTCTTCTCGGGAAGCTT 4183 Query 269181 TTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACG 269240 ||| |||||||| |||||||||||| | || | ||||| ||||| || ||||| |||| Sbjct 4182 CTGC-GCTATCTTCTGGTTGAAGAAACGCGGTTTGATGCCTGGATTGACCTTCTCCAACG 4124 Query 269241 AATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTT 269286 | ||||| | |||||||| ||||||||||| ||||| || || Sbjct 4123 AGTTGATTTCACGAGACGAAGGATTACACTGCGATTTCGCCTGCTT 4078 >seq259261 Length=7884 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | ||| || || ||||| || || ||||| || Sbjct 2572 GTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCCGTCCTCGAGCTGTTTCCCG 2513 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || ||||| || ||||| ||||| || || Sbjct 2512 GCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2453 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| | ||| ||||| | || || ||||| || || || ||| Sbjct 2452 ACGTTGTCGATCGTGTCGGAGGATTCGACCTCCAACGTGATCGTCTTCCCCGTTAGGGTT 2393 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || ||||||||||| Sbjct 2392 TTCACGAAGATCTGCATTTT 2373 >seq276382 Length=2823 Score = 100 bits (110), Expect = 7e-16 Identities = 153/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || || |||||||| ||||| |||| || | || || || Sbjct 2360 AAGCACAAGATGCAG-GTGGACTCCTTCTGAATGTTATAATCAGCAAGTATCCTCCCATC 2302 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | || || | ||| || | |||||||||||| | || || || || ||||| Sbjct 2301 TTCCAACTGCTTCCGTACAACGATCACCCTCTGTTGATCCAGTGGGATCCCCTCCTTATC 2242 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT-CTACCTCTAGTGTAATAG 104525 || ||||| || || ||||| || | ||||| | || || | ||||| || || || | Sbjct 2241 TTGGATCTTAGCCTTCACATTATCAATCGTATC-CGAGCTTTCCACCTCCAGAGTGATCG 2183 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| ||||| | || || || ||||||||||| Sbjct 2182 TCTTTCCAGTCAACGTCTTAACGAATATCTGCAT 2149 Score = 93.3 bits (102), Expect = 1e-13 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| ||||| | || || || ||||| || || ||||| | || |||| || |||| Sbjct 1902 TACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTTCGGCCATCTTG 1843 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || || ||||| ||||| || | ||||| ||| || || || || || || ||||| || Sbjct 1842 AAGCTGCTTTCCGGCAAATATCAACCTCTATTGGTCTGGTGGGATGCCCTCCTTATCTTG 1783 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||||||||||| ||||| || | ||| || | || ||||| | || || ||||| Sbjct 1782 GATCTTTGCTTTCACATTGTCAATGGTGTCTGAACTCTCGACCTCCAAAGTTATCGTCTT 1723 Query 104530 ACCAGT 104535 || || Sbjct 1722 TCCGGT 1717 >seq277754 Length=2847 Score = 93.3 bits (102), Expect = 1e-13 Identities = 142/204 (70%), Gaps = 9/204 (4%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | ||||| || || || || || ||||| | ||| ||||||||||| || ||| Sbjct 2783 AGATGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCCTCGAGT 2724 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 |||||||| || || || |||| || || || || || || ||||| || || Sbjct 2723 TGTTTTCCGGCGAAGATGAGCCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTC------- 2671 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 ||||| || || | | ||| ||| | || ||||| || || || ||||| || Sbjct 2670 --GGCTTTCACGTTGTAGATGGTGTCGGAGGACTCAACCTCCAGCGTTATGGTCTTGCCG 2613 Query 104534 GTAAGTGTTTTTACAAATATCTGC 104557 || || ||||| || || |||||| Sbjct 2612 GTTAGGGTTTTCACGAAGATCTGC 2589 >seq293582 Length=2029 Score = 87.8 bits (96), Expect = 4e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGT-CTTTTGCCGCTATCTTTTG 269196 || || || ||| ||| || || || ||||| || || ||| ||| || ||||| || Sbjct 1442 GTCGCCTTCGCCTGTGTCGAGGGCATCTTCTTCTCCGGAAGCTTCTGC-GCCATCTTCTG 1384 Query 269197 GTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGA 269256 | | ||||| | ||||| ||||| || |||| ||||| ||||||||||| ||||| Sbjct 1383 GCTCAAGAAGCGCGGCCTGATGCCGGGCCTAACGTTCTCCAACGAATTGATCTCGAGGGA 1324 Query 269257 CGAAGGTTTACACTGCGACTTCGCTTGTTT 269286 |||||| | |||||||| ||||| || || Sbjct 1323 CGAAGGCCTGCACTGCGATTTCGCGTGCTT 1294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1144554723227448