Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq284040 95.1 1e-14 seq62239 91.5 1e-13 seq25275 87.8 2e-12 >seq284040 Length=2693 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||| | || || ||| | |||||| || ||||| || |||||||| || || Sbjct 529 CCGCCGCGAAGCCGTAGCACCAGATGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGCT 470 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || |||||||||||||||| ||| || | || | ||||||||||| || Sbjct 469 AGGGTTCTGCCGTCCTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGA 410 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | |||||||||| || ||| ||||| | | || ||||||| ||| | Sbjct 409 ATTCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTATCGGAGCTCTCGACC 350 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || || ||||| ||||| || ||||| || || |||||||| Sbjct 349 TCCAGAGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 303 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || |||||||||||||||| ||| || | Sbjct 722 CTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCTGCCGTCCTCCAGCTGCTTCCCGGCGAA 663 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||||||| || | | |||||||||| || ||| ||||| Sbjct 662 GATGAGACGCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTGACGTT 603 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || ||||||| ||| ||| | || ||||| || ||||| || ||||| || Sbjct 602 ATCGATCGTATCGGAGCTCTCGACCTCCAGAGTGATGGTCTTGCCGGTTAGGGTTTTGAC 543 Query 48715 AAAAATCTGCATC 48727 || ||||||||| Sbjct 542 GAAGATCTGCATC 530 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||||| | || | ||| | ||| |||||| || ||||||||||| ||| Sbjct 985 CCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCC 926 Query 48560 AATTGTCGCTC-GTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || ||| || ||| || |||||||| ||| || | || ||||||||||| ||| || Sbjct 925 AAA-GTCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGG 867 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||||| ||| ||| ||| | | || || |||| ||| Sbjct 866 GATTCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCAC 807 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || || ||||| ||||| | || ||||| || ||||||||| Sbjct 806 CTCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCATC 758 >seq62239 Length=9780 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCT 48581 || || ||| |||||| || |||||||| || || | ||| || ||||||| |||| Sbjct 5355 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGG-GTC-CTGCCGTCCTCGAGCT 5412 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| ||| || | || | || ||||| ||| ||| | | ||||||||| || | Sbjct 5413 GCTTCCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCT 5472 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | | ||||| |||| || || ||| | ||||||||||| |||| Sbjct 5473 TGGCCTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCTAGGGTTATGGTTTTCCCGG 5532 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 | || |||||||| || ||||||||| Sbjct 5533 TTAGGGTTTTCACGAAGATCTGCATC 5558 >seq25275 Length=8276 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/238 (68%), Gaps = 20/238 (8%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| || ||||||||||| ||||| || ||||||| Sbjct 5227 ACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCCAAAGTGCGACCGTCCTCG 5168 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| | | || || | |||||| || || | || |||||||| Sbjct 5167 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGG 5108 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG---TCTCGACT------GTT 48688 |||||| ||| | | ||||| ||| |||| |||||||| || Sbjct 5107 ATTTTCGCCTT---------CACGTTATCGATAGTGTCCGAGCTCTCGACTTCCAACGTG 5057 Query 48689 ATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT--CGTGTCTTGATCGAAGAA 48744 |||||||| || || || ||||| ||||| || ||||| || |||| | ||||||| Sbjct 5056 ATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCATACCGCCTCTTAAACGAAGAA 4999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418869507059906