Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq284040 95.1 1e-14
seq62239 91.5 1e-13
seq25275 87.8 2e-12
>seq284040
Length=2693
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|| ||||| | || || ||| | |||||| || ||||| || |||||||| || ||
Sbjct 529 CCGCCGCGAAGCCGTAGCACCAGATGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGCT 470
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
| || |||||||||||||||| ||| || | || | ||||||||||| ||
Sbjct 469 AGGGTTCTGCCGTCCTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGA 410
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| | |||||||||| || ||| ||||| | | || ||||||| ||| |
Sbjct 409 ATTCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTATCGGAGCTCTCGACC 350
Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | || || ||||| ||||| || ||||| || || ||||||||
Sbjct 349 TCCAGAGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 303
Score = 91.5 bits (100), Expect = 1e-13
Identities = 136/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || |||||||| || || | || |||||||||||||||| ||| || |
Sbjct 722 CTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCTGCCGTCCTCCAGCTGCTTCCCGGCGAA 663
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
|| | ||||||||||||| || | | |||||||||| || ||| |||||
Sbjct 662 GATGAGACGCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTGACGTT 603
Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714
| || ||||||| ||| ||| | || ||||| || ||||| || ||||| ||
Sbjct 602 ATCGATCGTATCGGAGCTCTCGACCTCCAGAGTGATGGTCTTGCCGGTTAGGGTTTTGAC 543
Query 48715 AAAAATCTGCATC 48727
|| |||||||||
Sbjct 542 GAAGATCTGCATC 530
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
||||| | ||||| | || | ||| | ||| |||||| || ||||||||||| |||
Sbjct 985 CCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCC 926
Query 48560 AATTGTCGCTC-GTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| ||| || ||| || |||||||| ||| || | || ||||||||||| ||| ||
Sbjct 925 AAA-GTCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGG 867
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | |||||||||| ||| ||| ||| | | || || |||| |||
Sbjct 866 GATTCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCAC 807
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
||| | || || ||||| ||||| | || ||||| || |||||||||
Sbjct 806 CTCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCATC 758
>seq62239
Length=9780
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/206 (71%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCT 48581
|| || ||| |||||| || |||||||| || || | ||| || ||||||| ||||
Sbjct 5355 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGG-GTC-CTGCCGTCCTCGAGCT 5412
Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641
|||| ||| || | || | || ||||| ||| ||| | | ||||||||| || |
Sbjct 5413 GCTTCCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCT 5472
Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701
| ||||| | | ||||| |||| || || ||| | ||||||||||| ||||
Sbjct 5473 TGGCCTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCTAGGGTTATGGTTTTCCCGG 5532
Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727
| || |||||||| || |||||||||
Sbjct 5533 TTAGGGTTTTCACGAAGATCTGCATC 5558
>seq25275
Length=8276
Score = 87.8 bits (96), Expect = 2e-12
Identities = 162/238 (68%), Gaps = 20/238 (8%)
Strand=Plus/Minus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577
|| || ||||| ||| |||||| || ||||||||||| ||||| || |||||||
Sbjct 5227 ACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCCAAAGTGCGACCGTCCTCG 5168
Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637
|||||||| ||| | | || || | |||||| || || | || ||||||||
Sbjct 5167 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGG 5108
Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG---TCTCGACT------GTT 48688
|||||| ||| | | ||||| ||| |||| |||||||| ||
Sbjct 5107 ATTTTCGCCTT---------CACGTTATCGATAGTGTCCGAGCTCTCGACTTCCAACGTG 5057
Query 48689 ATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT--CGTGTCTTGATCGAAGAA 48744
|||||||| || || || ||||| ||||| || ||||| || |||| | |||||||
Sbjct 5056 ATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCATACCGCCTCTTAAACGAAGAA 4999
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 418869507059906
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