Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq259664 122 5e-23 seq227781 120 2e-22 seq23154 116 2e-21 seq304128 113 2e-20 seq232353 113 2e-20 seq204923 113 2e-20 seq149199 111 8e-20 seq141862 111 8e-20 seq136799 109 3e-19 seq12717 109 3e-19 seq297605 107 1e-18 seq11280 107 1e-18 seq149200 105 3e-18 seq4328 105 3e-18 seq224529 104 1e-17 seq118276 104 1e-17 seq283716 102 4e-17 seq24074 100 1e-16 seq303969 96.9 2e-15 seq272239 96.9 2e-15 seq298182 95.1 6e-15 seq279809 91.5 8e-14 seq299215 89.7 3e-13 seq291906 89.7 3e-13 seq124919 89.7 3e-13 >seq259664 Length=8345 Score = 122 bits (134), Expect = 5e-23 Identities = 80/89 (90%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||||||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 6836 AAAAATGAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 6777 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCG 11533 |||| ||||||||||||||| |||| ||| Sbjct 6776 CTCTAACCAACTGAGCTAATAGGCCTTCG 6748 >seq227781 Length=7654 Score = 120 bits (132), Expect = 2e-22 Identities = 80/90 (89%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 4424 AAAAATAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 4365 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 |||| ||||||||||||||| |||||| || Sbjct 4364 CTCTAACCAACTGAGCTAATAGGCCGTTGA 4335 >seq23154 Length=7425 Score = 116 bits (128), Expect = 2e-21 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 2114 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 2173 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 2174 CAACTGAGCTAATGGGCC 2191 >seq304128 Length=5746 Score = 113 bits (124), Expect = 2e-20 Identities = 81/93 (87%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || ||| ||||||| | |||||||||| | | |||||||| ||||||||||||||||| Sbjct 4056 AAGTAAAAAAAAATTA--TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 3999 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 3998 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 3966 >seq232353 Length=15773 Score = 113 bits (124), Expect = 2e-20 Identities = 88/105 (84%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 11425 AGGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACC 11484 ||| |||| | ||||| | |||| ||| ||||||||| | | |||||||| ||||| Sbjct 2802 AGGAAAATGAAAAATTATGACAAAA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACC 2859 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 2860 TTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 2904 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 2974 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 3033 Query 11516 TGAGCTAATGGGCCGTCG 11533 ||||||||| ||||| || Sbjct 3034 TGAGCTAATAGGCCGACG 3051 >seq204923 Length=6089 Score = 113 bits (124), Expect = 2e-20 Identities = 86/101 (85%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||||| ||| | | |||| |||| |||||||| | | |||||||| ||||||||| Sbjct 1613 AAATATAAAATGGAAAGAAAAAGAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCG 1671 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 1672 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 1712 >seq149199 Length=1497 Score = 111 bits (122), Expect = 8e-20 Identities = 87/104 (84%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 11428 GAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||||| ||| | | |||| |||||||||||| | | |||||||| |||||||| Sbjct 663 GAAATATTGAAAAAGTGTAAAA---AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTC 607 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||||||||||||||||| |||| |||||||||| |||||| Sbjct 606 GCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCGT 563 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 484 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 425 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 424 CTGAGCTAATAGGCC 410 >seq141862 Length=5405 Score = 111 bits (122), Expect = 8e-20 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 1419 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1478 Query 11512 CAACTGAGCTAATGGGCCGT 11531 || |||||||||| |||||| Sbjct 1479 CAGCTGAGCTAATAGGCCGT 1498 >seq136799 Length=9254 Score = 109 bits (120), Expect = 3e-19 Identities = 80/93 (86%), Gaps = 3/93 (3%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| | |||| | |||||||||| | | |||||||| ||||||||||||||||| Sbjct 4671 AATTAACACAAAA---AGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 4615 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 4614 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 4582 >seq12717 Length=9155 Score = 109 bits (120), Expect = 3e-19 Identities = 77/88 (88%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| | |||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 6900 ATAAAAAA---ATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 6956 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||||||||||| |||| Sbjct 6957 ACGCTCTAACCAACTGAGCTAATAGGCC 6984 >seq297605 Length=5417 Score = 107 bits (118), Expect = 1e-18 Identities = 81/97 (84%), Gaps = 8/97 (8%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 3724 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 3783 Query 11515 CTGAGCTAATGGGCCGTCGACGATTGTGATTTTTCAT 11551 |||||||||| |||| |||| ||||||||| Sbjct 3784 CTGAGCTAATAGGCC--------TTGTTATTTTTCAT 3812 >seq11280 Length=8511 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1181 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 1122 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 1121 ACTGAGCTAATAGGCC 1106 >seq149200 Length=347 Score = 105 bits (116), Expect = 3e-18 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | |||||||| ||||||||||||||||||||||||||||| || Sbjct 265 AAATTGGCCCATGCAGATCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 206 Query 11512 CAACTGAGCTAATGGGCCGT 11531 || |||||||||| |||||| Sbjct 205 CAGCTGAGCTAATAGGCCGT 186 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 172 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 113 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 112 TGAGCTAATAGGCC 99 >seq4328 Length=6637 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 3461 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 3520 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 3521 CTGAGCTAATAGGCC 3535 >seq224529 Length=1880 Score = 104 bits (114), Expect = 1e-17 Identities = 73/83 (88%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 1423 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1482 Query 11512 CAACTGAGCTAATGGGCC-GTCG 11533 || |||||||||| |||| |||| Sbjct 1483 CAGCTGAGCTAATAGGCCTGTCG 1505 >seq118276 Length=5035 Score = 104 bits (114), Expect = 1e-17 Identities = 76/87 (87%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 1180 AAAAAAT--ATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 1237 Query 11504 GCTCTRACC-AACTGAGCTAATGGGCC 11529 ||||| ||| |||||||||||| |||| Sbjct 1238 GCTCTAACCAAACTGAGCTAATAGGCC 1264 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1333 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 1392 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 1393 CTGAGCTAATAGGCC 1407 >seq283716 Length=1690 Score = 102 bits (112), Expect = 4e-17 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 231 AAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 290 Query 11512 CAACTGAGCTAAT 11524 ||||||||||||| Sbjct 291 CAACTGAGCTAAT 303 >seq24074 Length=2522 Score = 100 bits (110), Expect = 1e-16 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11449 ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCT 11508 || ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| Sbjct 2289 ATAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCT 2230 Query 11509 RACCAACTGAGCTAATGGG 11527 |||| |||||||||| || Sbjct 2229 AACCAGCTGAGCTAATAGG 2211 >seq303969 Length=6845 Score = 96.9 bits (106), Expect = 2e-15 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 910 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 969 Query 11515 CTGAGCT 11521 ||||||| Sbjct 970 CTGAGCT 976 >seq272239 Length=5801 Score = 96.9 bits (106), Expect = 2e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||| ||| ||||| Sbjct 5663 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGATCTAACCAA 5604 Query 11515 CTGAGCTAATGGGCC 11529 || ||||||| |||| Sbjct 5603 CTAAGCTAATAGGCC 5589 >seq298182 Length=1466 Score = 95.1 bits (104), Expect = 6e-15 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 538 TCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 480 >seq279809 Length=9344 Score = 91.5 bits (100), Expect = 8e-14 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| ||||||||||||||||||||||||||||| |||| |||||||||| |||| Sbjct 283 TCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCT 342 Query 11531 TC 11532 || Sbjct 343 TC 344 >seq299215 Length=1445 Score = 89.7 bits (98), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 521 AAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 580 Query 11511 CCAACTGA 11518 |||||||| Sbjct 581 CCAACTGA 588 >seq291906 Length=831 Score = 89.7 bits (98), Expect = 3e-13 Identities = 73/90 (81%), Gaps = 7/90 (8%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| |||||| ||| ||| | ||||||||| | | |||||||| ||||||||| Sbjct 303 AAAAATAGAAGTAAAAAACA-------TGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 355 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGA 11518 |||||||||||||||||||| ||||||||| Sbjct 356 CGTTATTAGCACGACGCTCTAACCAACTGA 385 >seq124919 Length=5720 Score = 89.7 bits (98), Expect = 3e-13 Identities = 76/91 (84%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGA-TCGAACCTTCGACCTT-CGCGTTATTAGC 11498 ||| |||||| | ||||||||| ||| |||||||| | ||||| |||||||||||| Sbjct 213 AATTAAAAATAA---TGGCCCATGTCAGGTCTCGAACCTGCAACCTTTCGCGTTATTAGC 269 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||| |||||||||| |||| Sbjct 270 ACGACGCTCTAACCAGCTGAGCTAATAGGCC 300 Lambda K H 0.637 0.409 0.918 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260012766834856