Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq259664 122 5e-23
seq227781 120 2e-22
seq23154 116 2e-21
seq304128 113 2e-20
seq232353 113 2e-20
seq204923 113 2e-20
seq149199 111 8e-20
seq141862 111 8e-20
seq136799 109 3e-19
seq12717 109 3e-19
seq297605 107 1e-18
seq11280 107 1e-18
seq149200 105 3e-18
seq4328 105 3e-18
seq224529 104 1e-17
seq118276 104 1e-17
seq283716 102 4e-17
seq24074 100 1e-16
seq303969 96.9 2e-15
seq272239 96.9 2e-15
seq298182 95.1 6e-15
seq279809 91.5 8e-14
seq299215 89.7 3e-13
seq291906 89.7 3e-13
seq124919 89.7 3e-13
>seq259664
Length=8345
Score = 122 bits (134), Expect = 5e-23
Identities = 80/89 (90%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
|||||| ||||||||||||| | | |||||||| |||||||||||||||||||||||||
Sbjct 6836 AAAAATGAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 6777
Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCG 11533
|||| ||||||||||||||| |||| |||
Sbjct 6776 CTCTAACCAACTGAGCTAATAGGCCTTCG 6748
>seq227781
Length=7654
Score = 120 bits (132), Expect = 2e-22
Identities = 80/90 (89%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
|||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||||
Sbjct 4424 AAAAATAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 4365
Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCGA 11534
|||| ||||||||||||||| |||||| ||
Sbjct 4364 CTCTAACCAACTGAGCTAATAGGCCGTTGA 4335
>seq23154
Length=7425
Score = 116 bits (128), Expect = 2e-21
Identities = 72/78 (92%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 2114 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 2173
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||||||||
Sbjct 2174 CAACTGAGCTAATGGGCC 2191
>seq304128
Length=5746
Score = 113 bits (124), Expect = 2e-20
Identities = 81/93 (87%), Gaps = 2/93 (2%)
Strand=Plus/Minus
Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496
|| ||| ||||||| | |||||||||| | | |||||||| |||||||||||||||||
Sbjct 4056 AAGTAAAAAAAAATTA--TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 3999
Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||| ||||||||||||||| ||||
Sbjct 3998 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 3966
>seq232353
Length=15773
Score = 113 bits (124), Expect = 2e-20
Identities = 88/105 (84%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 11425 AGGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACC 11484
||| |||| | ||||| | |||| ||| ||||||||| | | |||||||| |||||
Sbjct 2802 AGGAAAATGAAAAATTATGACAAAA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACC 2859
Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 2860 TTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 2904
Score = 102 bits (112), Expect = 4e-17
Identities = 69/78 (88%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 2974 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 3033
Query 11516 TGAGCTAATGGGCCGTCG 11533
||||||||| ||||| ||
Sbjct 3034 TGAGCTAATAGGCCGACG 3051
>seq204923
Length=6089
Score = 113 bits (124), Expect = 2e-20
Identities = 86/101 (85%), Gaps = 1/101 (1%)
Strand=Plus/Plus
Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488
||||||| ||| | | |||| |||| |||||||| | | |||||||| |||||||||
Sbjct 1613 AAATATAAAATGGAAAGAAAAAGAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCG 1671
Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1672 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 1712
>seq149199
Length=1497
Score = 111 bits (122), Expect = 8e-20
Identities = 87/104 (84%), Gaps = 3/104 (3%)
Strand=Plus/Minus
Query 11428 GAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487
||||||| ||| | | |||| |||||||||||| | | |||||||| ||||||||
Sbjct 663 GAAATATTGAAAAAGTGTAAAA---AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTC 607
Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531
||||||||||||||||||||| |||| |||||||||| ||||||
Sbjct 606 GCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCGT 563
Score = 105 bits (116), Expect = 3e-18
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 484 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 425
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||| ||||
Sbjct 424 CTGAGCTAATAGGCC 410
>seq141862
Length=5405
Score = 111 bits (122), Expect = 8e-20
Identities = 72/80 (90%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1419 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1478
Query 11512 CAACTGAGCTAATGGGCCGT 11531
|| |||||||||| ||||||
Sbjct 1479 CAGCTGAGCTAATAGGCCGT 1498
>seq136799
Length=9254
Score = 109 bits (120), Expect = 3e-19
Identities = 80/93 (86%), Gaps = 3/93 (3%)
Strand=Plus/Minus
Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496
|||||| | |||| | |||||||||| | | |||||||| |||||||||||||||||
Sbjct 4671 AATTAACACAAAA---AGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 4615
Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||| ||||||||||||||| ||||
Sbjct 4614 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 4582
>seq12717
Length=9155
Score = 109 bits (120), Expect = 3e-19
Identities = 77/88 (88%), Gaps = 3/88 (3%)
Strand=Plus/Plus
Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501
|||||||| | |||||||||| | | |||||||| ||||||||||||||||||||||
Sbjct 6900 ATAAAAAA---ATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 6956
Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| ||||||||||||||| ||||
Sbjct 6957 ACGCTCTAACCAACTGAGCTAATAGGCC 6984
>seq297605
Length=5417
Score = 107 bits (118), Expect = 1e-18
Identities = 81/97 (84%), Gaps = 8/97 (8%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 3724 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 3783
Query 11515 CTGAGCTAATGGGCCGTCGACGATTGTGATTTTTCAT 11551
|||||||||| |||| |||| |||||||||
Sbjct 3784 CTGAGCTAATAGGCC--------TTGTTATTTTTCAT 3812
>seq11280
Length=8511
Score = 107 bits (118), Expect = 1e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513
||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1181 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 1122
Query 11514 ACTGAGCTAATGGGCC 11529
||||||||||| ||||
Sbjct 1121 ACTGAGCTAATAGGCC 1106
>seq149200
Length=347
Score = 105 bits (116), Expect = 3e-18
Identities = 71/80 (89%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||||||||||||| | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 265 AAATTGGCCCATGCAGATCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 206
Query 11512 CAACTGAGCTAATGGGCCGT 11531
|| |||||||||| ||||||
Sbjct 205 CAGCTGAGCTAATAGGCCGT 186
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 172 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 113
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 112 TGAGCTAATAGGCC 99
>seq4328
Length=6637
Score = 105 bits (116), Expect = 3e-18
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 3461 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 3520
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||| ||||
Sbjct 3521 CTGAGCTAATAGGCC 3535
>seq224529
Length=1880
Score = 104 bits (114), Expect = 1e-17
Identities = 73/83 (88%), Gaps = 1/83 (1%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1423 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1482
Query 11512 CAACTGAGCTAATGGGCC-GTCG 11533
|| |||||||||| |||| ||||
Sbjct 1483 CAGCTGAGCTAATAGGCCTGTCG 1505
>seq118276
Length=5035
Score = 104 bits (114), Expect = 1e-17
Identities = 76/87 (87%), Gaps = 3/87 (3%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||||| | |||||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 1180 AAAAAAT--ATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 1237
Query 11504 GCTCTRACC-AACTGAGCTAATGGGCC 11529
||||| ||| |||||||||||| ||||
Sbjct 1238 GCTCTAACCAAACTGAGCTAATAGGCC 1264
Score = 102 bits (112), Expect = 4e-17
Identities = 67/75 (89%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1333 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 1392
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||| ||||
Sbjct 1393 CTGAGCTAATAGGCC 1407
>seq283716
Length=1690
Score = 102 bits (112), Expect = 4e-17
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 231 AAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 290
Query 11512 CAACTGAGCTAAT 11524
|||||||||||||
Sbjct 291 CAACTGAGCTAAT 303
>seq24074
Length=2522
Score = 100 bits (110), Expect = 1e-16
Identities = 69/79 (87%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 11449 ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCT 11508
|| ||| ||||||||| | | |||||||| |||||||||||||||||||||||||||||
Sbjct 2289 ATAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCT 2230
Query 11509 RACCAACTGAGCTAATGGG 11527
|||| |||||||||| ||
Sbjct 2229 AACCAGCTGAGCTAATAGG 2211
>seq303969
Length=6845
Score = 96.9 bits (106), Expect = 2e-15
Identities = 61/67 (91%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 910 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 969
Query 11515 CTGAGCT 11521
|||||||
Sbjct 970 CTGAGCT 976
>seq272239
Length=5801
Score = 96.9 bits (106), Expect = 2e-15
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||| ||| |||||
Sbjct 5663 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGATCTAACCAA 5604
Query 11515 CTGAGCTAATGGGCC 11529
|| ||||||| ||||
Sbjct 5603 CTAAGCTAATAGGCC 5589
>seq298182
Length=1466
Score = 95.1 bits (104), Expect = 6e-15
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 538 TCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 480
>seq279809
Length=9344
Score = 91.5 bits (100), Expect = 8e-14
Identities = 57/62 (92%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530
|||||||| ||||||||||||||||||||||||||||| |||| |||||||||| ||||
Sbjct 283 TCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCT 342
Query 11531 TC 11532
||
Sbjct 343 TC 344
>seq299215
Length=1445
Score = 89.7 bits (98), Expect = 3e-13
Identities = 61/68 (90%), Gaps = 1/68 (1%)
Strand=Plus/Plus
Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510
|||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |
Sbjct 521 AAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 580
Query 11511 CCAACTGA 11518
||||||||
Sbjct 581 CCAACTGA 588
>seq291906
Length=831
Score = 89.7 bits (98), Expect = 3e-13
Identities = 73/90 (81%), Gaps = 7/90 (8%)
Strand=Plus/Plus
Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488
||| |||||| ||| ||| | ||||||||| | | |||||||| |||||||||
Sbjct 303 AAAAATAGAAGTAAAAAACA-------TGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 355
Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGA 11518
|||||||||||||||||||| |||||||||
Sbjct 356 CGTTATTAGCACGACGCTCTAACCAACTGA 385
>seq124919
Length=5720
Score = 89.7 bits (98), Expect = 3e-13
Identities = 76/91 (84%), Gaps = 5/91 (5%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGA-TCGAACCTTCGACCTT-CGCGTTATTAGC 11498
||| |||||| | ||||||||| ||| |||||||| | ||||| ||||||||||||
Sbjct 213 AATTAAAAATAA---TGGCCCATGTCAGGTCTCGAACCTGCAACCTTTCGCGTTATTAGC 269
Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||| |||| |||||||||| ||||
Sbjct 270 ACGACGCTCTAACCAGCTGAGCTAATAGGCC 300
Lambda K H
0.637 0.409 0.918
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 260012766834856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |