Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq258385 203 5e-48
seq258212 167 4e-37
seq304125 159 5e-35
seq458059 149 1e-31
seq233941 143 4e-30
seq142017 138 2e-28
seq210152 136 6e-28
seq223390 109 9e-20
seq246863 100 4e-17
seq366641 93.3 7e-15
seq163140 82.4 1e-11
>seq258385
Length=4787
Score = 203 bits (224), Expect = 5e-48
Identities = 205/267 (77%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||||||||| | | ||| || || |||||||| || ||||| ||||| || |||
Sbjct 2634 GCCAAGCGTCATCGGAAAGTTCTCCGTGACAACATCCAGGGGATCACGAAGCCGGCGATC 2693
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| |||||||| | |||||||| ||||||||| || || || |||| || ||||
Sbjct 2694 CGGCGTCTGGCGAGGCGTGGTGGCGTCAAGCGTATCAGCGGTCTGATCTACGAGGAGACG 2753
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
| | || ||||||||||||||| ||| ||| |||| ||| || | ||| ||||||
Sbjct 2754 AGAGGCGTGTTGAAGATCTTCCTCGAGAACGTCATCCGTGACGCCGTAACCTACACCGAG 2813
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||| || ||||| |||||| ||||||| |||||||||| ||||| |||||||||
Sbjct 2814 CACGCTCGCCGGAAGACCGTCACCGCCATGGACGTCGTCTATGCCTTGAAGCGTCAAGGC 2873
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||| | | || || ||||| |||||
Sbjct 2874 CGTACGCTGTACGGATTTGGTGGTTAA 2900
>seq258212
Length=2817
Score = 167 bits (184), Expect = 4e-37
Identities = 197/267 (74%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| || | | ||| || || ||||||||||| ||||| ||||| || ||
Sbjct 2028 GCAAAGCGTCACCGGAAAGTTCTACGTGACAACATCCAAGGCATCACGAAGCCGGCGATT 2087
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| |||||||| | | || || || |||||| || || | |||| || ||||
Sbjct 2088 CGACGTCTGGCGAGAAGAGGCGGTGTGAAGCGTATCAGCGGCCTCATCTACGAGGAGACG 2147
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | ||| ||||||||||| || ||| ||| |||| ||||| || ||| ||||||
Sbjct 2148 CGAGGTGTGTTGAAGATCTTTCTAGAGAACGTCATCCGAGATGCGGTCACCTACACCGAG 2207
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||| || || ||||| ||| |||||||| | || ||||| |||||||| ||||||
Sbjct 2208 CACGCTCGCCGGAAAACTGTTACCGCCATGGATGTGGTTTATGCTTTGAAACGCCAAGGC 2267
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| | | || ||||| ||| |||||
Sbjct 2268 CGAACTCTCTACGGTTTCGGAGGTTAA 2294
>seq304125
Length=4859
Score = 159 bits (176), Expect = 5e-35
Identities = 195/266 (73%), Gaps = 0/266 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| || | | ||| ||||| |||||||| || ||||| ||||| || |||
Sbjct 1931 GCCAAGCGTCACCGGAAAGTTCTCCGAGACAACATCCAGGGGATCACGAAGCCGGCGATC 1872
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| |||||||| | ||||| ||||| |||||| || || | |||| || ||||
Sbjct 1871 CGCCGTCTGGCCAGGCGTGGCGGAGTGAAGCGTATCAGCGGCCTTATCTACGAGGAGACG 1812
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| || | |||||||| || ||| ||| |||| ||||| | ||| ||||||
Sbjct 1811 CGTGGCGTGCTCAAGATCTTTCTAGAGAACGTCATCCGCGATGCGGTTACCTACACCGAG 1752
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||| || || || |||||| ||||||| |||||||||| ||||| || |||||
Sbjct 1751 CACGCTCGCCGGAAAACCGTCACCGCCATGGACGTCGTCTATGCCTTGAAGCGCCAAGGA 1692
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698
|| | | || ||||| || ||||
Sbjct 1691 CGGACTCTGTACGGTTTCGGTGGTTA 1666
>seq458059
Length=1715
Score = 149 bits (164), Expect = 1e-31
Identities = 181/247 (73%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
|||||| ||||||||||| || ||||| ||||| || || | | |||||||| | ||
Sbjct 630 TCTTCGCGATAACATCCAGGGGATCACAAAGCCCGCCATTAGAAGGCTGGCTCGCAGAGG 689
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
||| || |||||| || ||| ||| | |||||||| | ||||| ||| | ||||||||
Sbjct 690 TGGTGTTAAGCGTATCAGTGGCTTGATATATGAAGAAACTCGTGGAGTTCTCAAGATCTT 749
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
||| | | |||||| ||||| || || |||||||||||| || ||||| ||
Sbjct 750 TCTCGAAAATGTTATCAGAGATGCGGTCACTTACACCGAGCACGCTCGCCGGAAGACCGT 809
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
||| ||||||| | || ||||| ||||| || || || |||| | ||||| || ||
Sbjct 810 TACCGCCATGGACGTGGTTTATGCTTTGAAGCGACAGGGGCGTACTCTCTATGGATTCGG 869
Query 16693 AAGTTAA 16699
|||||
Sbjct 870 TGGTTAA 876
>seq233941
Length=2156
Score = 143 bits (158), Expect = 4e-30
Identities = 192/267 (72%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| || | ||| |||||||||||||| || ||||| ||||| || |||
Sbjct 1635 GCAAAGCGTCACCGGAAGGTTCTCCGAGATAACATCCAGGGGATCACGAAGCCCGCCATC 1576
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| | ||||| ||| | || || || |||||| || ||| || |||| || ||||
Sbjct 1575 CGAAGGCTGGCCCGTAGAGGCGGCGTGAAGCGTATCAGTGGCCTGATCTACGAGGAGACG 1516
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| ||| | |||||||| || ||| || ||| || || || ||| ||||||
Sbjct 1515 CGTGGCGTTCTCAAGATCTTTCTAGAGAATGTCATCAGAGACGCCGTCACCTACACCGAG 1456
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||| || ||||| |||||| ||||||| | || ||||| ||||| | || |||
Sbjct 1455 CACGCTCGCCGGAAGACCGTCACCGCCATGGACGTGGTTTATGCCTTGAAGAGACAGGGC 1396
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| | | || || ||||| |||||
Sbjct 1395 CGGACTCTCTACGGCTTTGGTGGTTAA 1369
>seq142017
Length=5424
Score = 138 bits (152), Expect = 2e-28
Identities = 187/261 (72%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || ||||| || | | ||| |||||||||||||| || ||||| ||||| || |||
Sbjct 652 GCAAAACGTCACCGGAAAGTTCTCCGAGATAACATCCAGGGGATCACAAAGCCGGCGATC 711
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| | ||||| | | || ||||| ||| | || ||| ||| ||||||| |||| |
Sbjct 712 CGGAGGCTGGCCAGAAGAGGCGGAGTGAAGAGAATCAGTGGGTTGATCTATGAGGAGACT 771
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | ||||||||||||||| | ||| || |||| |||||| | || || |||
Sbjct 772 CGGGGGGTTTTGAAGATCTTCTTGGAGAATGTGATCCGTGATGCGGTGACTTACACGGAG 831
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| ||| || || || || ||| |||||||| | || ||||| | || | |||||
Sbjct 832 CATGCTCGCCGGAAAACGGTGACCGCCATGGATGTTGTGTATGCTCTTAAGAGGCAAGGT 891
Query 16673 CGTAAGATTTATGGTTTTGGA 16693
|| | ||||||| ||||||
Sbjct 892 CGAACTCTTTATGGGTTTGGA 912
>seq210152
Length=13928
Score = 136 bits (150), Expect = 6e-28
Identities = 192/267 (72%), Gaps = 2/267 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| | | | || ||||| || |||||||| || ||||||||||| || ||
Sbjct 3750 GCCAAGCGTCACAGGAAGGTC-CTTCGCGACAACATCCAGGGGATCACCAAGCCCGCCAT 3808
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
| | || ||||| | || || || ||||| || || ||| |||| || ||||
Sbjct 3809 TAGAAGGCTCGCTCGCAGGGGAGGCGTGAAGCGCATCAGCGGCTTGATCTACGAGGAGAC 3868
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | |||| | ||||||||||| ||| ||| ||| || || || ||| |||||
Sbjct 3869 CCGCGGTGTTCTCAAGATCTTCCTAGAGAACGTCATCAGAGACGCCGTCACCTACACCGA 3928
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||||| || || || |||||| ||||||| | ||||| || ||||||| || ||
Sbjct 3929 GCACGCTCGCCGGAAAACCGTCACCGCCATGGACGTGGTCTACGCTCTGAAACGCCAGGG 3988
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698
||||| | ||||| ||||| ||||
Sbjct 3989 CCGTACTCTGTATGGATTTGGTGGTTA 4015
>seq223390
Length=13754
Score = 109 bits (120), Expect = 9e-20
Identities = 186/267 (70%), Gaps = 2/267 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| || || ||||| | | || || || || |||||||| || ||||| ||||| || ||
Sbjct 1499 GCGAAACGGCATCGTAAGGTC-CTCCGTGACAACATCCAGGGGATCACGAAGCCGGCGAT 1557
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||||||||| | | || || || ||||| || || ||| |||| |||||||
Sbjct 1558 CCGTCGTCTGGCGAGGAGAGGCGGCGTGAAGCGGATCAGCGGCTTGATCTACGAAGAGAC 1617
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| |||||||||| || ||| ||| ||| || || || || || ||
Sbjct 1618 CCGCGGAGTTCTGAAGATCTTTCTGGAGAACGTGATCAGGGACGCGGTCACGTACACGGA 1677
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||| ||| || ||||| || ||| ||||||| | || ||||| |||| | || ||
Sbjct 1678 GCATGCTCGGCGGAAGACGGTGACCGCCATGGACGTGGTGTATGCGCTGAAGAGGCAGGG 1737
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698
|| | | | || || || || ||||
Sbjct 1738 GCGGACGCTGTACGGATTCGGTGGTTA 1764
>seq246863
Length=3687
Score = 100 bits (110), Expect = 4e-17
Identities = 123/168 (73%), Gaps = 4/168 (2%)
Strand=Plus/Plus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
|||||| |||||||||| |||||||||||||||||||||| | ||||| | ||||
Sbjct 2454 TCTTCGCAATAACATCCAGGGAATCACCAAGCCAGCTATCCAGCATCTGGTGAGGCGTGA 2513
Query 16513 TGGAGTCAAGCGTGTCTCT----GGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGA 16568
||| || |||||| | | | || | | ||||| || | || | | |||||||
Sbjct 2514 TGGCGTTAAGCGTATGTATTAGGGGTCTTATTTATGAGGAAACACGGAAGATCTTGAAGA 2573
Query 16569 TCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACG 16616
|||||||| ||| ||||| | ||||| | | ||| ||||||||||
Sbjct 2574 TCTTCCTCGAGAATGTTATTCGTGATGTTGTGACCTACACCGAGCACG 2621
>seq366641
Length=233
Score = 93.3 bits (102), Expect = 7e-15
Identities = 132/186 (71%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| || | | ||| || ||||||||||| || ||||||||||| || |||
Sbjct 46 GCAAAGCGTCACCGGAAAGTTCTCCGTGATAACATCCAGGGGATCACCAAGCCTGCGATC 105
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
| | ||||| | | || || || ||| | || || || |||| |||||||
Sbjct 106 AGGAGGCTGGCGAGGAGGGGCGGTGTGAAGAGGATCAGCGGTCTGATCTACGAAGAGACG 165
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| |||| | |||||||| | ||| || |||| |||||| | ||| || |||
Sbjct 166 CGTGGTGTTCTCAAGATCTTTTTGGAGAATGTGATCCGTGATGCCGTGACCTACACTGAG 225
Query 16613 CACGCT 16618
||||||
Sbjct 226 CACGCT 231
>seq163140
Length=7012
Score = 82.4 bits (90), Expect = 1e-11
Identities = 174/260 (67%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| || | |||||| ||||||||||| |||||||| ||||| || |||
Sbjct 1309 GCAAAGCGTCACCGGAAGGTTCTTCGTGATAACATCCAGGGAATCACGAAGCCGGCGATC 1368
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
| | ||||| | | || ||||| ||| | || || | |||| ||||| |
Sbjct 1369 AGGAGGCTGGCGAGGAGAGGCGGAGTGAAGAGGATCAGCGGTCTCATCTACGAAGAAACC 1428
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
| | || | ||||||||| | | | ||| || | ||||| | ||| || |||
Sbjct 1429 AGAGGCGTGCTCAAGATCTTCTTGGAAAACGTGATTCGAGATGCGGTTACCTACACGGAG 1488
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| ||| | ||||| || || | ||||| ||||||| || ||||| | |||||
Sbjct 1489 CATGCTCGGAGGAAGACGGTAACTGCAATGGACGTCGTCTACGCCTTGAAGAGACAAGGT 1548
Query 16673 CGTAAGATTTATGGTTTTGG 16692
| | |||| || |||||
Sbjct 1549 AGGACTCTTTACGGATTTGG 1568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 78651047496858
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