Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq258385 203 5e-48 seq258212 167 4e-37 seq304125 159 5e-35 seq458059 149 1e-31 seq233941 143 4e-30 seq142017 138 2e-28 seq210152 136 6e-28 seq223390 109 9e-20 seq246863 100 4e-17 seq366641 93.3 7e-15 seq163140 82.4 1e-11 >seq258385 Length=4787 Score = 203 bits (224), Expect = 5e-48 Identities = 205/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | ||| || || |||||||| || ||||| ||||| || ||| Sbjct 2634 GCCAAGCGTCATCGGAAAGTTCTCCGTGACAACATCCAGGGGATCACGAAGCCGGCGATC 2693 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| | |||||||| ||||||||| || || || |||| || |||| Sbjct 2694 CGGCGTCTGGCGAGGCGTGGTGGCGTCAAGCGTATCAGCGGTCTGATCTACGAGGAGACG 2753 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | || ||||||||||||||| ||| ||| |||| ||| || | ||| |||||| Sbjct 2754 AGAGGCGTGTTGAAGATCTTCCTCGAGAACGTCATCCGTGACGCCGTAACCTACACCGAG 2813 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| |||||| ||||||| |||||||||| ||||| ||||||||| Sbjct 2814 CACGCTCGCCGGAAGACCGTCACCGCCATGGACGTCGTCTATGCCTTGAAGCGTCAAGGC 2873 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || || ||||| ||||| Sbjct 2874 CGTACGCTGTACGGATTTGGTGGTTAA 2900 >seq258212 Length=2817 Score = 167 bits (184), Expect = 4e-37 Identities = 197/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | ||| || || ||||||||||| ||||| ||||| || || Sbjct 2028 GCAAAGCGTCACCGGAAAGTTCTACGTGACAACATCCAAGGCATCACGAAGCCGGCGATT 2087 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| | | || || || |||||| || || | |||| || |||| Sbjct 2088 CGACGTCTGGCGAGAAGAGGCGGTGTGAAGCGTATCAGCGGCCTCATCTACGAGGAGACG 2147 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||||||||| || ||| ||| |||| ||||| || ||| |||||| Sbjct 2148 CGAGGTGTGTTGAAGATCTTTCTAGAGAACGTCATCCGAGATGCGGTCACCTACACCGAG 2207 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || || ||||| ||| |||||||| | || ||||| |||||||| |||||| Sbjct 2208 CACGCTCGCCGGAAAACTGTTACCGCCATGGATGTGGTTTATGCTTTGAAACGCCAAGGC 2267 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| ||| ||||| Sbjct 2268 CGAACTCTCTACGGTTTCGGAGGTTAA 2294 >seq304125 Length=4859 Score = 159 bits (176), Expect = 5e-35 Identities = 195/266 (73%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | ||| ||||| |||||||| || ||||| ||||| || ||| Sbjct 1931 GCCAAGCGTCACCGGAAAGTTCTCCGAGACAACATCCAGGGGATCACGAAGCCGGCGATC 1872 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| | ||||| ||||| |||||| || || | |||| || |||| Sbjct 1871 CGCCGTCTGGCCAGGCGTGGCGGAGTGAAGCGTATCAGCGGCCTTATCTACGAGGAGACG 1812 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | |||||||| || ||| ||| |||| ||||| | ||| |||||| Sbjct 1811 CGTGGCGTGCTCAAGATCTTTCTAGAGAACGTCATCCGCGATGCGGTTACCTACACCGAG 1752 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || || || |||||| ||||||| |||||||||| ||||| || ||||| Sbjct 1751 CACGCTCGCCGGAAAACCGTCACCGCCATGGACGTCGTCTATGCCTTGAAGCGCCAAGGA 1692 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 || | | || ||||| || |||| Sbjct 1691 CGGACTCTGTACGGTTTCGGTGGTTA 1666 >seq458059 Length=1715 Score = 149 bits (164), Expect = 1e-31 Identities = 181/247 (73%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| || ||||| ||||| || || | | |||||||| | || Sbjct 630 TCTTCGCGATAACATCCAGGGGATCACAAAGCCCGCCATTAGAAGGCTGGCTCGCAGAGG 689 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || |||||| || ||| ||| | |||||||| | ||||| ||| | |||||||| Sbjct 690 TGGTGTTAAGCGTATCAGTGGCTTGATATATGAAGAAACTCGTGGAGTTCTCAAGATCTT 749 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| | | |||||| ||||| || || |||||||||||| || ||||| || Sbjct 750 TCTCGAAAATGTTATCAGAGATGCGGTCACTTACACCGAGCACGCTCGCCGGAAGACCGT 809 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | || ||||| ||||| || || || |||| | ||||| || || Sbjct 810 TACCGCCATGGACGTGGTTTATGCTTTGAAGCGACAGGGGCGTACTCTCTATGGATTCGG 869 Query 16693 AAGTTAA 16699 ||||| Sbjct 870 TGGTTAA 876 >seq233941 Length=2156 Score = 143 bits (158), Expect = 4e-30 Identities = 192/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | ||| |||||||||||||| || ||||| ||||| || ||| Sbjct 1635 GCAAAGCGTCACCGGAAGGTTCTCCGAGATAACATCCAGGGGATCACGAAGCCCGCCATC 1576 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | ||||| ||| | || || || |||||| || ||| || |||| || |||| Sbjct 1575 CGAAGGCTGGCCCGTAGAGGCGGCGTGAAGCGTATCAGTGGCCTGATCTACGAGGAGACG 1516 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | |||||||| || ||| || ||| || || || ||| |||||| Sbjct 1515 CGTGGCGTTCTCAAGATCTTTCTAGAGAATGTCATCAGAGACGCCGTCACCTACACCGAG 1456 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| |||||| ||||||| | || ||||| ||||| | || ||| Sbjct 1455 CACGCTCGCCGGAAGACCGTCACCGCCATGGACGTGGTTTATGCCTTGAAGAGACAGGGC 1396 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || || ||||| ||||| Sbjct 1395 CGGACTCTCTACGGCTTTGGTGGTTAA 1369 >seq142017 Length=5424 Score = 138 bits (152), Expect = 2e-28 Identities = 187/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || ||||| || | | ||| |||||||||||||| || ||||| ||||| || ||| Sbjct 652 GCAAAACGTCACCGGAAAGTTCTCCGAGATAACATCCAGGGGATCACAAAGCCGGCGATC 711 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | ||||| | | || ||||| ||| | || ||| ||| ||||||| |||| | Sbjct 712 CGGAGGCTGGCCAGAAGAGGCGGAGTGAAGAGAATCAGTGGGTTGATCTATGAGGAGACT 771 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||||||||||||||| | ||| || |||| |||||| | || || ||| Sbjct 772 CGGGGGGTTTTGAAGATCTTCTTGGAGAATGTGATCCGTGATGCGGTGACTTACACGGAG 831 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||| || || || || ||| |||||||| | || ||||| | || | ||||| Sbjct 832 CATGCTCGCCGGAAAACGGTGACCGCCATGGATGTTGTGTATGCTCTTAAGAGGCAAGGT 891 Query 16673 CGTAAGATTTATGGTTTTGGA 16693 || | ||||||| |||||| Sbjct 892 CGAACTCTTTATGGGTTTGGA 912 >seq210152 Length=13928 Score = 136 bits (150), Expect = 6e-28 Identities = 192/267 (72%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | | || ||||| || |||||||| || ||||||||||| || || Sbjct 3750 GCCAAGCGTCACAGGAAGGTC-CTTCGCGACAACATCCAGGGGATCACCAAGCCCGCCAT 3808 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | || ||||| | || || || ||||| || || ||| |||| || |||| Sbjct 3809 TAGAAGGCTCGCTCGCAGGGGAGGCGTGAAGCGCATCAGCGGCTTGATCTACGAGGAGAC 3868 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | |||| | ||||||||||| ||| ||| ||| || || || ||| ||||| Sbjct 3869 CCGCGGTGTTCTCAAGATCTTCCTAGAGAACGTCATCAGAGACGCCGTCACCTACACCGA 3928 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || |||||| ||||||| | ||||| || ||||||| || || Sbjct 3929 GCACGCTCGCCGGAAAACCGTCACCGCCATGGACGTGGTCTACGCTCTGAAACGCCAGGG 3988 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||||| | ||||| ||||| |||| Sbjct 3989 CCGTACTCTGTATGGATTTGGTGGTTA 4015 >seq223390 Length=13754 Score = 109 bits (120), Expect = 9e-20 Identities = 186/267 (70%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || || ||||| | | || || || || |||||||| || ||||| ||||| || || Sbjct 1499 GCGAAACGGCATCGTAAGGTC-CTCCGTGACAACATCCAGGGGATCACGAAGCCGGCGAT 1557 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| | | || || || ||||| || || ||| |||| ||||||| Sbjct 1558 CCGTCGTCTGGCGAGGAGAGGCGGCGTGAAGCGGATCAGCGGCTTGATCTACGAAGAGAC 1617 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| |||||||||| || ||| ||| ||| || || || || || || Sbjct 1618 CCGCGGAGTTCTGAAGATCTTTCTGGAGAACGTGATCAGGGACGCGGTCACGTACACGGA 1677 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| ||| || ||||| || ||| ||||||| | || ||||| |||| | || || Sbjct 1678 GCATGCTCGGCGGAAGACGGTGACCGCCATGGACGTGGTGTATGCGCTGAAGAGGCAGGG 1737 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 || | | | || || || || |||| Sbjct 1738 GCGGACGCTGTACGGATTCGGTGGTTA 1764 >seq246863 Length=3687 Score = 100 bits (110), Expect = 4e-17 Identities = 123/168 (73%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| |||||||||| |||||||||||||||||||||| | ||||| | |||| Sbjct 2454 TCTTCGCAATAACATCCAGGGAATCACCAAGCCAGCTATCCAGCATCTGGTGAGGCGTGA 2513 Query 16513 TGGAGTCAAGCGTGTCTCT----GGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGA 16568 ||| || |||||| | | | || | | ||||| || | || | | ||||||| Sbjct 2514 TGGCGTTAAGCGTATGTATTAGGGGTCTTATTTATGAGGAAACACGGAAGATCTTGAAGA 2573 Query 16569 TCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACG 16616 |||||||| ||| ||||| | ||||| | | ||| |||||||||| Sbjct 2574 TCTTCCTCGAGAATGTTATTCGTGATGTTGTGACCTACACCGAGCACG 2621 >seq366641 Length=233 Score = 93.3 bits (102), Expect = 7e-15 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | ||| || ||||||||||| || ||||||||||| || ||| Sbjct 46 GCAAAGCGTCACCGGAAAGTTCTCCGTGATAACATCCAGGGGATCACCAAGCCTGCGATC 105 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | ||||| | | || || || ||| | || || || |||| ||||||| Sbjct 106 AGGAGGCTGGCGAGGAGGGGCGGTGTGAAGAGGATCAGCGGTCTGATCTACGAAGAGACG 165 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| | |||||||| | ||| || |||| |||||| | ||| || ||| Sbjct 166 CGTGGTGTTCTCAAGATCTTTTTGGAGAATGTGATCCGTGATGCCGTGACCTACACTGAG 225 Query 16613 CACGCT 16618 |||||| Sbjct 226 CACGCT 231 >seq163140 Length=7012 Score = 82.4 bits (90), Expect = 1e-11 Identities = 174/260 (67%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | |||||| ||||||||||| |||||||| ||||| || ||| Sbjct 1309 GCAAAGCGTCACCGGAAGGTTCTTCGTGATAACATCCAGGGAATCACGAAGCCGGCGATC 1368 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | ||||| | | || ||||| ||| | || || | |||| ||||| | Sbjct 1369 AGGAGGCTGGCGAGGAGAGGCGGAGTGAAGAGGATCAGCGGTCTCATCTACGAAGAAACC 1428 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | || | ||||||||| | | | ||| || | ||||| | ||| || ||| Sbjct 1429 AGAGGCGTGCTCAAGATCTTCTTGGAAAACGTGATTCGAGATGCGGTTACCTACACGGAG 1488 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||| | ||||| || || | ||||| ||||||| || ||||| | ||||| Sbjct 1489 CATGCTCGGAGGAAGACGGTAACTGCAATGGACGTCGTCTACGCCTTGAAGAGACAAGGT 1548 Query 16673 CGTAAGATTTATGGTTTTGG 16692 | | |||| || ||||| Sbjct 1549 AGGACTCTTTACGGATTTGG 1568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78651047496858