Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_006882.2
Length=45176
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 316 6e-82
seq169634 224 3e-54
seq250312 188 2e-43
seq300680 181 3e-41
seq10884 134 4e-27
seq36621 127 6e-25
seq8631 127 6e-25
seq254652 95.1 3e-15
seq264332 84.2 6e-12
>seq107965
Length=6474
Score = 316 bits (350), Expect = 6e-82
Identities = 434/601 (72%), Gaps = 4/601 (1%)
Strand=Plus/Plus
Query 19458 TACGGAAACAATATTATTTCTGG-AGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCA 19516
|| |||||||||||||||| || | || || |||| | || || ||||| ||||
Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTA-TTCCTATTTCTGCAGCTATAGGTTTGCA 5934
Query 19517 CTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATA 19576
||||| || || |||||||| || | ||||| ||||||||||| || ||||| ||
Sbjct 5935 TTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTA 5994
Query 19577 TCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGA 19636
| |||| |||| | ||||||||| | || ||||| ||| ||| | |||||||
Sbjct 5995 TGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGA 6054
Query 19637 ACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATC 19696
||| || | | || ||| || | ||||| | || |||||| |||| || | |
Sbjct 6055 ACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTTGC 6114
Query 19697 AGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTA 19755
||| || || ||| ||||| | | |||||| |||| ||||| || ||| ||||||||
Sbjct 6115 AGCTGCGAGTGTTGT-TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTA 6173
Query 19756 TGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATA 19815
||||||| || || ||||||||||| ||||| ||| | |||||||| || || ||||| |
Sbjct 6174 TGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACA 6233
Query 19816 TCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCT 19875
| |||||||| || || |||||||| ||||| ||||| ||| |||| || || || |||
Sbjct 6234 TTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTCA 6293
Query 19876 CTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTAT 19935
||||||||| || ||||| || || | | |||| |||||| || || || ||
Sbjct 6294 GTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAAT 6353
Query 19936 CGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCAC 19995
| || | || || | || || | ||| || || || |||||||| || || | |
Sbjct 6354 CTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTTC 6413
Query 19996 ACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTAC 20055
| || || ||||| ||||||| || ||||||||| |||||| || |||||||||||||
Sbjct 6414 ATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 6473
Query 20056 A 20056
|
Sbjct 6474 A 6474
>seq169634
Length=720
Score = 224 bits (248), Expect = 3e-54
Identities = 329/460 (72%), Gaps = 4/460 (1%)
Strand=Plus/Minus
Query 19308 AGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTA 19367
|||||||| ||||| ||||| | || |||||||| || | ||||| ||| |||| |
Sbjct 459 AGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTG 400
Query 19368 GCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGC 19427
| || ||| || ||||| |||| || || || || || || || ||||| |||||
Sbjct 399 ACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGT 340
Query 19428 ATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAG-CAGT 19486
|| ||||| || |||| || || ||| || ||||||||||||||||| || | || |
Sbjct 339 ATTCGTGAACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATT 280
Query 19487 AGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTT 19546
| |||| | || || ||||| |||| ||||| || || |||||||| | | |
Sbjct 279 A-TTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGT 221
Query 19547 AGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGG 19606
||||| ||||||||||| || ||||| ||| |||| |||| | ||||||||| | ||
Sbjct 220 TGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG 161
Query 19607 AGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATG 19666
||||| ||| ||| | |||||||||| || | | | || ||| |||| ||
Sbjct 160 TGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTG 101
Query 19667 GATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACC 19725
||| | || |||||| |||| | | |||| || |||||| ||||| | | ||||
Sbjct 100 GATTGTTGTTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGT-TTTCTTGATCTACC 42
Query 19726 CATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGG 19765
|| |||| ||||| || ||| ||||||||||||||| ||
Sbjct 41 CAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGG 2
>seq250312
Length=8481
Score = 188 bits (208), Expect = 2e-43
Identities = 325/464 (70%), Gaps = 15/464 (3%)
Strand=Plus/Plus
Query 19806 GAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGA 19865
|| ||||| || |||| ||| | || |||||||| || || ||||| ||| | || |
Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633
Query 19866 TCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATC-ATCAAGGAAACAAC 19924
|| || ||| |||||||| || ||||| || ||| | | |||| |||||| ||
Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACC-CCTAGTTTGATCAGGGAAACCAC 1692
Query 19925 TGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATAT 19984
|| ||| || || | || |||| ||||| ||||| | ||| | || |||||
Sbjct 1693 AAAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATAT 1752
Query 19985 TGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTC 20044
||| || || || || || ||||| ||||||| || | | ||||| |||||| || ||
Sbjct 1753 TGTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTC 1812
Query 20045 TCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCAT 20104
|||| |||||||||||| || ||||||| || | ||| ||| | | |
Sbjct 1813 ACGTTTTTTACATTTCTTCCTAGCTACTTGGCCTATC--TGGTTTATTGTGT-------T 1863
Query 20105 GGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGA 20164
|| ||| |||||||||||| |||||| |||||||||| || | || || ||||| ||
Sbjct 1864 AGGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGA 1923
Query 20165 T-GTCAACGGAAAGATAATCCCAACATGGGCTGATGT-ATTAAATAGAGCTAACCTCGGA 20222
||||| | | | |||| || ||||||||| | ||||| | | |||||||| ||
Sbjct 1924 CAGTCAATGTCATG-TAATTAATACTTGGGCTGATATCATTAACT-GTGCTAACCTTGGT 1981
Query 20223 TTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGA 20266
| ||||||||| | || | ||||||||||| ||||| || ||
Sbjct 1982 ATGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGA 2025
>seq300680
Length=3790
Score = 181 bits (200), Expect = 3e-41
Identities = 235/322 (73%), Gaps = 2/322 (1%)
Strand=Plus/Minus
Query 19740 AGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTC 19799
|| ||| ||||||||||||||| || || ||||||||||| ||||| ||| | ||||||
Sbjct 673 AGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 614
Query 19800 CAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTC 19859
|| | || ||||| || |||||||| || || |||||||| | || ||||| ||| ||
Sbjct 613 CAGGTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTC 554
Query 19860 GGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAA 19919
| | || || || ||||||||| || ||||| || | || | | | |||||
Sbjct 553 GTCAGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCT-CTAGTTTAATCAGGAA 495
Query 19920 ACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAG-AGACATA 19978
|| | || ||| || || | || || || ||||| ||||| |||| | || ||
Sbjct 494 ACCAGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTA 435
Query 19979 TAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAA 20038
|||||| || || || || || || ||||| ||||| | || || |||||| ||||||
Sbjct 434 TAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAA 375
Query 20039 TAATTCTCGTTCTTTACATTTC 20060
|| ||||||||||||||||||
Sbjct 374 CAACTCTCGTTCTTTACATTTC 353
>seq10884
Length=5042
Score = 134 bits (148), Expect = 4e-27
Identities = 119/149 (80%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 19740 AGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTC 19799
|| ||| ||||||||||||||| || || ||||||||||| ||||| ||| | ||||||
Sbjct 3786 AGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 3845
Query 19800 CAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTC 19859
|| || || ||||| || |||||||| || || |||||||| || || ||||| ||||||
Sbjct 3846 CAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTC 3905
Query 19860 GGTGGATCTCTTTTCTCTGCTATGCACGG 19888
|| || || || ||| |||||| || ||
Sbjct 3906 GGCGGCTCCCTATTCATTGCTATACATGG 3934
>seq36621
Length=13842
Score = 127 bits (140), Expect = 6e-25
Identities = 219/309 (71%), Gaps = 7/309 (2%)
Strand=Plus/Minus
Query 19968 GAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATAT 20027
||||| || |||||||| || ||| || || || ||||| ||||||| || |||||
Sbjct 7968 GAAGAAACTTATAATATCGTATATGCTCATGGTTA-TTTGGCTGATTGATCTTCTAATAT 7910
Query 20028 GCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGC 20087
||| |||||| | |||| || | || |||| ||||| ||| ||| || || ||||
Sbjct 7909 GCTAGTTTCAACGACTCTCATTTTATATATTTTTTTCTAGCTGCTTGGCCTGTTTTTGGT 7850
Query 20088 ATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTT 20147
|||||| | || | |||| | ||| ||||||||||||||| ||||||| ||
Sbjct 7849 ATATGGTTCACTGCGTTGGGTACTAGCATTATGGCTTTCAACCTAAATGGTTGAAATCGA 7790
Query 20148 AACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGT-ATTAA 20205
||||| | ||||||||| ||| || | |||| || || | |||| | | |||
Sbjct 7789 AACCAATTGGTAGTTGATAGTC-ACAGCCGTGTAATGAATACTTGAGGTGATATCAGTAA 7731
Query 20206 ATAGAGCTAACCTCGGATTTGAA-GTTATGCACGAGCGCAATGCTCATAACTTCCCACTT 20264
| |||||||| | | |||| |||||||| || || ||||||||||| | ||| ||
Sbjct 7730 CCA-TGCTAACCT-TGTTATGAATGTTATGCATGAACGTAATGCTCATAATTCCCCTCTA 7673
Query 20265 GATTTAGCT 20273
|| || |||
Sbjct 7672 GACTTGGCT 7664
>seq8631
Length=609
Score = 127 bits (140), Expect = 6e-25
Identities = 119/150 (79%), Gaps = 1/150 (1%)
Strand=Plus/Minus
Query 19740 AGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTC 19799
|| ||| ||||||||||||||| || || ||||||||||| ||||| ||| | ||||||
Sbjct 338 AGCTTTTTTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 279
Query 19800 CAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTC 19859
|| || || ||||| || |||||||| || || |||||||| | || ||||| ||||||
Sbjct 278 CAGGCCGAGCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTC 219
Query 19860 GGTGGATCTCT-TTTCTCTGCTATGCACGG 19888
|| || || || ||| ||||||||| ||
Sbjct 218 GGCGGCTCCCTAATTCAGTGCTATGCATGG 189
>seq254652
Length=6058
Score = 95.1 bits (104), Expect = 3e-15
Identities = 190/278 (68%), Gaps = 3/278 (1%)
Strand=Plus/Plus
Query 19415 AGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTAT 19474
|||||| ||||| || | ||| || ||| || || | || ||||||||||||||
Sbjct 668 AGATATTGATGGTATTCATGAACCTATTTTTACATCTCTACTTTATGGAAACAATATTAT 727
Query 19475 TTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGA 19534
||| || | || |||| | || | || | ||| |||| ||||| | || | |||
Sbjct 728 TTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGGTTTGCATTTTTACCTAATATAGGA 787
Query 19535 AGCCGGCACTT-TAGATGAGTGG-TTATACAACGGCGGTCCATATCAACTTGTTGTCTTC 19592
|| | || || | ||||| ||| |||||||| || ||||| ||| |||| |||| |
Sbjct 788 AG-CAACATTTGTTGATGAATGGTTTATACAATGGTGGTCCTTATGAACTAATTGTACTA 846
Query 19593 CACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTA 19652
||||||||| | || ||||| ||| ||| | |||||||||| || | | |
Sbjct 847 CACTTCTTACTTGGTGTAGCGTGTTACATGGGTCGCGAGTGGGAACTTAGTTTCCGTCTG 906
Query 19653 GGAATGAGACCATGGATATTCGTAGCATATACAGCACC 19690
|| || |||| | ||| | || |||||| |||| ||
Sbjct 907 GGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTCC 944
>seq264332
Length=996
Score = 84.2 bits (92), Expect = 6e-12
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 20005 TTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTC 20064
|||| ||||||| || ||||||||| |||||| || |||||||||||||||||||| |
Sbjct 274 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCC 215
Query 20065 TTGCTACTTTCCCCGTGGTTGGCATATGG 20093
| ||| ||| || || || ||||| |||
Sbjct 214 TAGCTGCTTGGCCTGTAGTAGGCATCTGG 186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143645888016936
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