Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq107965 316 6e-82 seq169634 224 3e-54 seq250312 188 2e-43 seq300680 181 3e-41 seq10884 134 4e-27 seq36621 127 6e-25 seq8631 127 6e-25 seq254652 95.1 3e-15 seq264332 84.2 6e-12 >seq107965 Length=6474 Score = 316 bits (350), Expect = 6e-82 Identities = 434/601 (72%), Gaps = 4/601 (1%) Strand=Plus/Plus Query 19458 TACGGAAACAATATTATTTCTGG-AGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCA 19516 || |||||||||||||||| || | || || |||| | || || ||||| |||| Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTA-TTCCTATTTCTGCAGCTATAGGTTTGCA 5934 Query 19517 CTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATA 19576 ||||| || || |||||||| || | ||||| ||||||||||| || ||||| || Sbjct 5935 TTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTA 5994 Query 19577 TCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGA 19636 | |||| |||| | ||||||||| | || ||||| ||| ||| | ||||||| Sbjct 5995 TGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGA 6054 Query 19637 ACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATC 19696 ||| || | | || ||| || | ||||| | || |||||| |||| || | | Sbjct 6055 ACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTTGC 6114 Query 19697 AGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTA 19755 ||| || || ||| ||||| | | |||||| |||| ||||| || ||| |||||||| Sbjct 6115 AGCTGCGAGTGTTGT-TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTA 6173 Query 19756 TGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATA 19815 ||||||| || || ||||||||||| ||||| ||| | |||||||| || || ||||| | Sbjct 6174 TGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACA 6233 Query 19816 TCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCT 19875 | |||||||| || || |||||||| ||||| ||||| ||| |||| || || || ||| Sbjct 6234 TTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTCA 6293 Query 19876 CTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTAT 19935 ||||||||| || ||||| || || | | |||| |||||| || || || || Sbjct 6294 GTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAAT 6353 Query 19936 CGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCAC 19995 | || | || || | || || | ||| || || || |||||||| || || | | Sbjct 6354 CTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTTC 6413 Query 19996 ACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTAC 20055 | || || ||||| ||||||| || ||||||||| |||||| || ||||||||||||| Sbjct 6414 ATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 6473 Query 20056 A 20056 | Sbjct 6474 A 6474 >seq169634 Length=720 Score = 224 bits (248), Expect = 3e-54 Identities = 329/460 (72%), Gaps = 4/460 (1%) Strand=Plus/Minus Query 19308 AGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTA 19367 |||||||| ||||| ||||| | || |||||||| || | ||||| ||| |||| | Sbjct 459 AGTACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTG 400 Query 19368 GCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGC 19427 | || ||| || ||||| |||| || || || || || || || ||||| ||||| Sbjct 399 ACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGT 340 Query 19428 ATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAG-CAGT 19486 || ||||| || |||| || || ||| || ||||||||||||||||| || | || | Sbjct 339 ATTCGTGAACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATT 280 Query 19487 AGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTT 19546 | |||| | || || ||||| |||| ||||| || || |||||||| | | | Sbjct 279 A-TTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGT 221 Query 19547 AGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGG 19606 ||||| ||||||||||| || ||||| ||| |||| |||| | ||||||||| | || Sbjct 220 TGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG 161 Query 19607 AGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATG 19666 ||||| ||| ||| | |||||||||| || | | | || ||| |||| || Sbjct 160 TGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTG 101 Query 19667 GATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACC 19725 ||| | || |||||| |||| | | |||| || |||||| ||||| | | |||| Sbjct 100 GATTGTTGTTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGT-TTTCTTGATCTACC 42 Query 19726 CATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGG 19765 || |||| ||||| || ||| ||||||||||||||| || Sbjct 41 CAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGG 2 >seq250312 Length=8481 Score = 188 bits (208), Expect = 2e-43 Identities = 325/464 (70%), Gaps = 15/464 (3%) Strand=Plus/Plus Query 19806 GAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGA 19865 || ||||| || |||| ||| | || |||||||| || || ||||| ||| | || | Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633 Query 19866 TCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATC-ATCAAGGAAACAAC 19924 || || ||| |||||||| || ||||| || ||| | | |||| |||||| || Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACC-CCTAGTTTGATCAGGGAAACCAC 1692 Query 19925 TGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATAT 19984 || ||| || || | || |||| ||||| ||||| | ||| | || ||||| Sbjct 1693 AAAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATAT 1752 Query 19985 TGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTC 20044 ||| || || || || || ||||| ||||||| || | | ||||| |||||| || || Sbjct 1753 TGTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTC 1812 Query 20045 TCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCAT 20104 |||| |||||||||||| || ||||||| || | ||| ||| | | | Sbjct 1813 ACGTTTTTTACATTTCTTCCTAGCTACTTGGCCTATC--TGGTTTATTGTGT-------T 1863 Query 20105 GGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGA 20164 || ||| |||||||||||| |||||| |||||||||| || | || || ||||| || Sbjct 1864 AGGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGA 1923 Query 20165 T-GTCAACGGAAAGATAATCCCAACATGGGCTGATGT-ATTAAATAGAGCTAACCTCGGA 20222 ||||| | | | |||| || ||||||||| | ||||| | | |||||||| || Sbjct 1924 CAGTCAATGTCATG-TAATTAATACTTGGGCTGATATCATTAACT-GTGCTAACCTTGGT 1981 Query 20223 TTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGA 20266 | ||||||||| | || | ||||||||||| ||||| || || Sbjct 1982 ATGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGA 2025 >seq300680 Length=3790 Score = 181 bits (200), Expect = 3e-41 Identities = 235/322 (73%), Gaps = 2/322 (1%) Strand=Plus/Minus Query 19740 AGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTC 19799 || ||| ||||||||||||||| || || ||||||||||| ||||| ||| | |||||| Sbjct 673 AGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 614 Query 19800 CAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTC 19859 || | || ||||| || |||||||| || || |||||||| | || ||||| ||| || Sbjct 613 CAGGTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTC 554 Query 19860 GGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAA 19919 | | || || || ||||||||| || ||||| || | || | | | ||||| Sbjct 553 GTCAGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCT-CTAGTTTAATCAGGAA 495 Query 19920 ACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAG-AGACATA 19978 || | || ||| || || | || || || ||||| ||||| |||| | || || Sbjct 494 ACCAGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTA 435 Query 19979 TAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAA 20038 |||||| || || || || || || ||||| ||||| | || || |||||| |||||| Sbjct 434 TAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAA 375 Query 20039 TAATTCTCGTTCTTTACATTTC 20060 || |||||||||||||||||| Sbjct 374 CAACTCTCGTTCTTTACATTTC 353 >seq10884 Length=5042 Score = 134 bits (148), Expect = 4e-27 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 19740 AGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTC 19799 || ||| ||||||||||||||| || || ||||||||||| ||||| ||| | |||||| Sbjct 3786 AGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 3845 Query 19800 CAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTC 19859 || || || ||||| || |||||||| || || |||||||| || || ||||| |||||| Sbjct 3846 CAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTC 3905 Query 19860 GGTGGATCTCTTTTCTCTGCTATGCACGG 19888 || || || || ||| |||||| || || Sbjct 3906 GGCGGCTCCCTATTCATTGCTATACATGG 3934 >seq36621 Length=13842 Score = 127 bits (140), Expect = 6e-25 Identities = 219/309 (71%), Gaps = 7/309 (2%) Strand=Plus/Minus Query 19968 GAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATAT 20027 ||||| || |||||||| || ||| || || || ||||| ||||||| || ||||| Sbjct 7968 GAAGAAACTTATAATATCGTATATGCTCATGGTTA-TTTGGCTGATTGATCTTCTAATAT 7910 Query 20028 GCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGC 20087 ||| |||||| | |||| || | || |||| ||||| ||| ||| || || |||| Sbjct 7909 GCTAGTTTCAACGACTCTCATTTTATATATTTTTTTCTAGCTGCTTGGCCTGTTTTTGGT 7850 Query 20088 ATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTT 20147 |||||| | || | |||| | ||| ||||||||||||||| ||||||| || Sbjct 7849 ATATGGTTCACTGCGTTGGGTACTAGCATTATGGCTTTCAACCTAAATGGTTGAAATCGA 7790 Query 20148 AACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGT-ATTAA 20205 ||||| | ||||||||| ||| || | |||| || || | |||| | | ||| Sbjct 7789 AACCAATTGGTAGTTGATAGTC-ACAGCCGTGTAATGAATACTTGAGGTGATATCAGTAA 7731 Query 20206 ATAGAGCTAACCTCGGATTTGAA-GTTATGCACGAGCGCAATGCTCATAACTTCCCACTT 20264 | |||||||| | | |||| |||||||| || || ||||||||||| | ||| || Sbjct 7730 CCA-TGCTAACCT-TGTTATGAATGTTATGCATGAACGTAATGCTCATAATTCCCCTCTA 7673 Query 20265 GATTTAGCT 20273 || || ||| Sbjct 7672 GACTTGGCT 7664 >seq8631 Length=609 Score = 127 bits (140), Expect = 6e-25 Identities = 119/150 (79%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 19740 AGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTC 19799 || ||| ||||||||||||||| || || ||||||||||| ||||| ||| | |||||| Sbjct 338 AGCTTTTTTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 279 Query 19800 CAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTC 19859 || || || ||||| || |||||||| || || |||||||| | || ||||| |||||| Sbjct 278 CAGGCCGAGCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTC 219 Query 19860 GGTGGATCTCT-TTTCTCTGCTATGCACGG 19888 || || || || ||| ||||||||| || Sbjct 218 GGCGGCTCCCTAATTCAGTGCTATGCATGG 189 >seq254652 Length=6058 Score = 95.1 bits (104), Expect = 3e-15 Identities = 190/278 (68%), Gaps = 3/278 (1%) Strand=Plus/Plus Query 19415 AGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTAT 19474 |||||| ||||| || | ||| || ||| || || | || |||||||||||||| Sbjct 668 AGATATTGATGGTATTCATGAACCTATTTTTACATCTCTACTTTATGGAAACAATATTAT 727 Query 19475 TTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGA 19534 ||| || | || |||| | || | || | ||| |||| ||||| | || | ||| Sbjct 728 TTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGGTTTGCATTTTTACCTAATATAGGA 787 Query 19535 AGCCGGCACTT-TAGATGAGTGG-TTATACAACGGCGGTCCATATCAACTTGTTGTCTTC 19592 || | || || | ||||| ||| |||||||| || ||||| ||| |||| |||| | Sbjct 788 AG-CAACATTTGTTGATGAATGGTTTATACAATGGTGGTCCTTATGAACTAATTGTACTA 846 Query 19593 CACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTA 19652 ||||||||| | || ||||| ||| ||| | |||||||||| || | | | Sbjct 847 CACTTCTTACTTGGTGTAGCGTGTTACATGGGTCGCGAGTGGGAACTTAGTTTCCGTCTG 906 Query 19653 GGAATGAGACCATGGATATTCGTAGCATATACAGCACC 19690 || || |||| | ||| | || |||||| |||| || Sbjct 907 GGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTCC 944 >seq264332 Length=996 Score = 84.2 bits (92), Expect = 6e-12 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 20005 TTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTC 20064 |||| ||||||| || ||||||||| |||||| || |||||||||||||||||||| | Sbjct 274 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCC 215 Query 20065 TTGCTACTTTCCCCGTGGTTGGCATATGG 20093 | ||| ||| || || || ||||| ||| Sbjct 214 TAGCTGCTTGGCCTGTAGTAGGCATCTGG 186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143645888016936