Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq107965 262 6e-65 seq169634 190 3e-43 seq250312 154 2e-32 seq300680 140 5e-28 seq10884 116 6e-21 seq8631 109 9e-19 seq36621 102 1e-16 >seq107965 Length=6474 Score = 262 bits (290), Expect = 6e-65 Identities = 409/585 (70%), Gaps = 0/585 (0%) Strand=Plus/Plus Query 211738 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACAC 211797 ||||| ||||| || || | ||| | || |||| ||| || || ||||| || Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGTTTGCAT 5935 Query 211798 TTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTAC 211857 || || || || ||||||||| || || ||||||| ||| | ||||||||||||||||| Sbjct 5936 TTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 5995 Query 211858 CAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAA 211917 | | | | | |||||| | | || | | |||||||| | |||||||| Sbjct 5996 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 6055 Query 211918 CTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCA 211977 ||| | ||| | |||||||| ||||||| |||||| |||||||| ||||| || Sbjct 6056 CTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTTGCA 6115 Query 211978 GCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATG 212037 || || | ||| ||| | | |||||| | ||||| || || || || |||||| Sbjct 6116 GCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATG 6175 Query 212038 CCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATC 212097 ||| |||| || || || || |||||||||||| | |||||||| || || || ||||| Sbjct 6176 CCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATT 6235 Query 212098 CTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCT 212157 |||||||||||||| || ||| |||||| || ||| | |||| || | ||||| | Sbjct 6236 CTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTCAGT 6295 Query 212158 GCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCA 212217 |||||||| ||||| | || || |||| | ||| | |||||||| | | || Sbjct 6296 GCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAATCT 6355 Query 212218 CAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACAT 212277 || | ||||||| || || | |||||| || || ||||| ||||| || | ||| Sbjct 6356 GCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTTCAT 6415 Query 212278 GGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAAC 212322 || || || || || | |||||||| ||||| ||||||||| Sbjct 6416 GGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAC 6460 >seq169634 Length=720 Score = 190 bits (210), Expect = 3e-43 Identities = 306/437 (70%), Gaps = 2/437 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||||| | ||| | | | ||||| | ||||| Sbjct 437 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATT 379 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | || ||||| || || ||||| || ||||| || || || |||||||| || ||| Sbjct 378 ATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTATGGA 319 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | ||||| ||||| || || || |||| || |||| |||| || || Sbjct 318 TCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCTACTTCTGCAGCTATA 259 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 ||||| || || || || || |||||||||||| | ||||||| ||| | ||||||||| Sbjct 258 GGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGT 199 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 |||||||| | | | | | |||||| | | || | | |||||||| | Sbjct 198 GGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGT 139 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||||||| | |||| | |||||||| |||||||| |||||| |||||||| Sbjct 138 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTTGTTGCATATTCAGCT 79 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028 |||| |||| || ||||| ||| | | |||||| | ||||| || || || Sbjct 78 TCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCT 19 Query 212029 GACGGTATGCCTTTAGG 212045 || ||||||||| |||| Sbjct 18 GATGGTATGCCTCTAGG 2 >seq250312 Length=8481 Score = 154 bits (170), Expect = 2e-32 Identities = 316/464 (68%), Gaps = 13/464 (3%) Strand=Plus/Plus Query 212086 GAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGA 212145 || || ||||| |||| |||| |||| || ||| ||| || || ||| | | || | Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633 Query 212146 GCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACT 212205 | ||||| |||||||| ||||| | || || || | ||| | |||||||| Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693 Query 212206 GGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATC 212265 || | | || | ||||| | ||||| ||||||| ||| | || || || Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753 Query 212266 GTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGC 212325 || || || ||||| || || ||| || | ||||||| |||| ||||||||| Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813 Query 212326 AGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATG 212385 | |||||| |||||||| || | |||||| ||||| | ||| | | | Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---ATCTG-----GTTTATTGTGT-TA 1864 Query 212386 GGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGAT 212445 |||||| |||| ||||| | |||||||||||| || | ||| | ||||| || || || Sbjct 1865 GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGA- 1923 Query 212446 GCA-TCAG-GTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTA 212503 || ||| || | || || |||||||| |||| | ||||| | || |||||||||| Sbjct 1924 -CAGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTA 1982 Query 212504 TGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGAC 212547 ||||||||||| | ||| | ||||| || || ||||| || ||| Sbjct 1983 TGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026 >seq300680 Length=3790 Score = 140 bits (154), Expect = 5e-28 Identities = 213/301 (71%), Gaps = 2/301 (1%) Strand=Plus/Minus Query 212023 TTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAA 212082 || || || ||||||||| |||| || || || || |||||||||||| | |||||||| Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611 Query 212083 GCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGT 212142 | || || ||||| |||||||||||||| || ||| | | || || ||| | ||| Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551 Query 212143 GGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACC 212202 | | |||| ||||||||| ||||| | || || ||| | ||| | |||||| Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492 Query 212203 ACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAG-AGACATATAA 212261 | | || | || | |||||||| ||||| |||||||||| | || ||||| Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432 Query 212262 CATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAA 212321 ||||| || || ||||| || || || || | ||||||||||||| |||||||| Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372 Query 212322 C 212322 | Sbjct 371 C 371 >seq10884 Length=5042 Score = 116 bits (128), Expect = 6e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 212023 TTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAA 212082 || || || ||||||||| |||| || || || || |||||||||||| | |||||||| Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848 Query 212083 GCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGT 212142 || || || ||||| |||||||||||||| || ||| ||| || || ||| | ||||| Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908 Query 212143 GGAGCATTATTCTCTGCTATGCACGGTTC 212171 || | ||||| |||||| || ||||| Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTC 3937 >seq8631 Length=609 Score = 109 bits (120), Expect = 9e-19 Identities = 117/152 (77%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 || ||||||||| |||| || || || || |||||||||||| | |||||||| || || Sbjct 329 GATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGAG 270 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGG-AGC 212147 || ||||| |||||||||||||| || ||| || || || ||| | ||||| || | Sbjct 269 CACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTCC 210 Query 212148 ATTATTCTCTGCTATGCACGGTTCTCTTGTTA 212179 | |||| ||||||||| ||||| |||| || Sbjct 209 CTAATTCAGTGCTATGCATGGTTC-CTTGGTA 179 >seq36621 Length=13842 Score = 102 bits (112), Expect = 1e-16 Identities = 212/309 (69%), Gaps = 9/309 (3%) Strand=Plus/Minus Query 212248 GAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTAT 212307 ||||| || ||||| ||||| ||| ||||| || || | | || | |||||| | ||| Sbjct 7968 GAAGAAACTTATAATATCGTATATGCTCATGGTTATTTGGCT-GATTGATCTTCTAATAT 7910 Query 212308 GCATCATTCAACAACAGCAGAAGTT-TACACTTCTTCCTCGCATCATGGCCTGTTATCTG 212366 || |||||| || | | || || | || || || || | ||||||||| | | Sbjct 7909 GCTAGTTTCAACGACT-CTCATTTTATATATTTTTTTCTAGCTGCTTGGCCTGTTTTTGG 7851 Query 212367 TGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTT 212426 | ||||||| || | |||||| ||| ||||| |||||||||||||| | || Sbjct 7850 TATATGGTTCACTGCGTTGGGTACTAGCATTATGGCTTTCAACCTAAATGGTTGAAATCG 7791 Query 212427 CAACCAATCAGTTGTTGAT-GCATCAG--GTAAGGTTGTTCCTACTTGGGGTGATGTTCT 212483 ||||||| || |||||| | ||| || || | |||||| |||||| | Sbjct 7790 AAACCAATTGGTAGTTGATAGTCACAGCCGT---GTAATGAATACTTGAGGTGATATCAG 7734 Query 212484 TAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACT 212543 |||| || ||||||| |||| | |||||||| ||| | ||||| || || | ||| || Sbjct 7733 TAACCATGCTAACCTTGTTATGAATGTTATGCATGAACGTAATGCTCATAATTCCCCTCT 7674 Query 212544 TGACTTAGC 212552 ||||| || Sbjct 7673 AGACTTGGC 7665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 802872328717360