Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_006883.2
Length=252401
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 262 6e-65
seq169634 190 3e-43
seq250312 154 2e-32
seq300680 140 5e-28
seq10884 116 6e-21
seq8631 109 9e-19
seq36621 102 1e-16
>seq107965
Length=6474
Score = 262 bits (290), Expect = 6e-65
Identities = 409/585 (70%), Gaps = 0/585 (0%)
Strand=Plus/Plus
Query 211738 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACAC 211797
||||| ||||| || || | ||| | || |||| ||| || || ||||| ||
Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGTTTGCAT 5935
Query 211798 TTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTAC 211857
|| || || || ||||||||| || || ||||||| ||| | |||||||||||||||||
Sbjct 5936 TTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 5995
Query 211858 CAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAA 211917
| | | | | |||||| | | || | | |||||||| | ||||||||
Sbjct 5996 GAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 6055
Query 211918 CTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCA 211977
||| | ||| | |||||||| ||||||| |||||| |||||||| ||||| ||
Sbjct 6056 CTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTTGCA 6115
Query 211978 GCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATG 212037
|| || | ||| ||| | | |||||| | ||||| || || || || ||||||
Sbjct 6116 GCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATG 6175
Query 212038 CCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATC 212097
||| |||| || || || || |||||||||||| | |||||||| || || || |||||
Sbjct 6176 CCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATT 6235
Query 212098 CTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCT 212157
|||||||||||||| || ||| |||||| || ||| | |||| || | ||||| |
Sbjct 6236 CTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTCAGT 6295
Query 212158 GCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCA 212217
|||||||| ||||| | || || |||| | ||| | |||||||| | | ||
Sbjct 6296 GCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAATCT 6355
Query 212218 CAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACAT 212277
|| | ||||||| || || | |||||| || || ||||| ||||| || | |||
Sbjct 6356 GCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTTCAT 6415
Query 212278 GGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAAC 212322
|| || || || || | |||||||| ||||| |||||||||
Sbjct 6416 GGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAC 6460
>seq169634
Length=720
Score = 190 bits (210), Expect = 3e-43
Identities = 306/437 (70%), Gaps = 2/437 (0%)
Strand=Plus/Minus
Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668
|||| |||||||||||| | |||||||| | ||| | | | ||||| | |||||
Sbjct 437 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATT 379
Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728
| || ||||| || || ||||| || ||||| || || || |||||||| || |||
Sbjct 378 ATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTATGGA 319
Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788
|| | | ||||| ||||| || || || |||| || |||| |||| || ||
Sbjct 318 TCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCTACTTCTGCAGCTATA 259
Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848
||||| || || || || || |||||||||||| | ||||||| ||| | |||||||||
Sbjct 258 GGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGT 199
Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908
|||||||| | | | | | |||||| | | || | | |||||||| |
Sbjct 198 GGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGT 139
Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968
||||||||||| | |||| | |||||||| |||||||| |||||| ||||||||
Sbjct 138 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTTGTTGCATATTCAGCT 79
Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028
|||| |||| || ||||| ||| | | |||||| | ||||| || || ||
Sbjct 78 TCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCT 19
Query 212029 GACGGTATGCCTTTAGG 212045
|| ||||||||| ||||
Sbjct 18 GATGGTATGCCTCTAGG 2
>seq250312
Length=8481
Score = 154 bits (170), Expect = 2e-32
Identities = 316/464 (68%), Gaps = 13/464 (3%)
Strand=Plus/Plus
Query 212086 GAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGA 212145
|| || ||||| |||| |||| |||| || ||| ||| || || ||| | | || |
Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633
Query 212146 GCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACT 212205
| ||||| |||||||| ||||| | || || || | ||| | ||||||||
Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693
Query 212206 GGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATC 212265
|| | | || | ||||| | ||||| ||||||| ||| | || || ||
Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753
Query 212266 GTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGC 212325
|| || || ||||| || || ||| || | ||||||| |||| |||||||||
Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813
Query 212326 AGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATG 212385
| |||||| |||||||| || | |||||| ||||| | ||| | | |
Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---ATCTG-----GTTTATTGTGT-TA 1864
Query 212386 GGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGAT 212445
|||||| |||| ||||| | |||||||||||| || | ||| | ||||| || || ||
Sbjct 1865 GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGA- 1923
Query 212446 GCA-TCAG-GTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTA 212503
|| ||| || | || || |||||||| |||| | ||||| | || ||||||||||
Sbjct 1924 -CAGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTA 1982
Query 212504 TGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGAC 212547
||||||||||| | ||| | ||||| || || ||||| || |||
Sbjct 1983 TGGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026
>seq300680
Length=3790
Score = 140 bits (154), Expect = 5e-28
Identities = 213/301 (71%), Gaps = 2/301 (1%)
Strand=Plus/Minus
Query 212023 TTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAA 212082
|| || || ||||||||| |||| || || || || |||||||||||| | ||||||||
Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611
Query 212083 GCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGT 212142
| || || ||||| |||||||||||||| || ||| | | || || ||| | |||
Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551
Query 212143 GGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACC 212202
| | |||| ||||||||| ||||| | || || ||| | ||| | ||||||
Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492
Query 212203 ACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAG-AGACATATAA 212261
| | || | || | |||||||| ||||| |||||||||| | || |||||
Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432
Query 212262 CATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAA 212321
||||| || || ||||| || || || || | ||||||||||||| ||||||||
Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372
Query 212322 C 212322
|
Sbjct 371 C 371
>seq10884
Length=5042
Score = 116 bits (128), Expect = 6e-21
Identities = 115/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 212023 TTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAA 212082
|| || || ||||||||| |||| || || || || |||||||||||| | ||||||||
Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848
Query 212083 GCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGT 212142
|| || || ||||| |||||||||||||| || ||| ||| || || ||| | |||||
Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908
Query 212143 GGAGCATTATTCTCTGCTATGCACGGTTC 212171
|| | ||||| |||||| || |||||
Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTC 3937
>seq8631
Length=609
Score = 109 bits (120), Expect = 9e-19
Identities = 117/152 (77%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088
|| ||||||||| |||| || || || || |||||||||||| | |||||||| || ||
Sbjct 329 GATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGAG 270
Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGG-AGC 212147
|| ||||| |||||||||||||| || ||| || || || ||| | ||||| || |
Sbjct 269 CACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTCC 210
Query 212148 ATTATTCTCTGCTATGCACGGTTCTCTTGTTA 212179
| |||| ||||||||| ||||| |||| ||
Sbjct 209 CTAATTCAGTGCTATGCATGGTTC-CTTGGTA 179
>seq36621
Length=13842
Score = 102 bits (112), Expect = 1e-16
Identities = 212/309 (69%), Gaps = 9/309 (3%)
Strand=Plus/Minus
Query 212248 GAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTAT 212307
||||| || ||||| ||||| ||| ||||| || || | | || | |||||| | |||
Sbjct 7968 GAAGAAACTTATAATATCGTATATGCTCATGGTTATTTGGCT-GATTGATCTTCTAATAT 7910
Query 212308 GCATCATTCAACAACAGCAGAAGTT-TACACTTCTTCCTCGCATCATGGCCTGTTATCTG 212366
|| |||||| || | | || || | || || || || | ||||||||| | |
Sbjct 7909 GCTAGTTTCAACGACT-CTCATTTTATATATTTTTTTCTAGCTGCTTGGCCTGTTTTTGG 7851
Query 212367 TGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTT 212426
| ||||||| || | |||||| ||| ||||| |||||||||||||| | ||
Sbjct 7850 TATATGGTTCACTGCGTTGGGTACTAGCATTATGGCTTTCAACCTAAATGGTTGAAATCG 7791
Query 212427 CAACCAATCAGTTGTTGAT-GCATCAG--GTAAGGTTGTTCCTACTTGGGGTGATGTTCT 212483
||||||| || |||||| | ||| || || | |||||| |||||| |
Sbjct 7790 AAACCAATTGGTAGTTGATAGTCACAGCCGT---GTAATGAATACTTGAGGTGATATCAG 7734
Query 212484 TAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACT 212543
|||| || ||||||| |||| | |||||||| ||| | ||||| || || | ||| ||
Sbjct 7733 TAACCATGCTAACCTTGTTATGAATGTTATGCATGAACGTAATGCTCATAATTCCCCTCT 7674
Query 212544 TGACTTAGC 212552
||||| ||
Sbjct 7673 AGACTTGGC 7665
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 802872328717360
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