Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_006884.2
Length=178249
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 279 6e-70
seq169634 188 8e-43
seq300680 185 1e-41
seq250312 150 2e-31
seq10884 120 3e-22
seq8631 114 1e-20
>seq107965
Length=6474
Score = 279 bits (308), Expect = 6e-70
Identities = 394/554 (71%), Gaps = 0/554 (0%)
Strand=Plus/Plus
Query 170879 GCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTAC 170938
|| ||||| || || || || || || ||||||||| | || | || || ||||| |||
Sbjct 5921 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATAC 5980
Query 170939 AACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATG 170998
|| || |||||||| | || || || | |||||| | |||| | || ||||||
Sbjct 5981 AATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 6040
Query 170999 GGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATAC 171058
||| | |||||||||| | | || || ||| || ||||||| ||| |||||
Sbjct 6041 GGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATAT 6100
Query 171059 TCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCA 171118
||||| ||||| | || || || || ||| | | || ||| | ||||| ||
Sbjct 6101 TCAGCTCCTGTTGCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGC 6160
Query 171119 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 171178
|| |||||||||||||| ||||| || || ||||| |||||||||||| | || |||||
Sbjct 6161 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 6220
Query 171179 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 171238
|| || |||||||| || |||||||| || || ||| ||||||||| ||| | ||||
Sbjct 6221 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGC 6280
Query 171239 GGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACA 171298
|| || |||||||| ||||| ||||| | || || |||| | | ||||| || ||
Sbjct 6281 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACC 6340
Query 171299 ACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAAC 171358
|| || || | | || | || || | || || | |||||| ||||| |||||
Sbjct 6341 ACAGAAAATAAATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAAT 6400
Query 171359 ATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAAC 171418
|| || || | |||||| || || || |||| |||||||| ||||| |||||||||
Sbjct 6401 ATCGTAGCCGTTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAC 6460
Query 171419 TCTCGTTCATTACA 171432
|||||||| |||||
Sbjct 6461 TCTCGTTCTTTACA 6474
>seq169634
Length=720
Score = 188 bits (208), Expect = 8e-43
Identities = 308/441 (70%), Gaps = 2/441 (0%)
Strand=Plus/Minus
Query 170702 TACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTT 170760
||| |||| ||||||||||| || |||||||| | ||| | || || || || ||
Sbjct 441 TACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATT 383
Query 170761 CATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGC 170820
||| | || ||||| |||||||||||||| ||||| || || || | ||||| |||
Sbjct 382 TATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTA 323
Query 170821 GGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGC 170880
|| ||| | ||||| ||||| || || || |||| | |||| |||| ||
Sbjct 322 TGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCTACTTCTGCAGC 263
Query 170881 AATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAA 170940
||||| || || || || || || ||||||||||| | | || || ||||| |||||
Sbjct 262 TATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATGGTTATACAA 203
Query 170941 CGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGG 171000
|| |||||||| | || || || | |||||| | |||| | || ||||||||
Sbjct 202 TGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGG 143
Query 171001 TAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTC 171060
| | |||||||||| | | | || || ||| |||||||||| ||| ||||| ||
Sbjct 142 TCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTTGTTGCATATTC 83
Query 171061 AGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATT 171120
||| |||| | || ||| ||| || ||| | | || ||| | ||||| || ||
Sbjct 82 AGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTT 23
Query 171121 CTCTGATGGTATGCCACTAGG 171141
|||||||||||||| |||||
Sbjct 22 TTCTGATGGTATGCCTCTAGG 2
>seq300680
Length=3790
Score = 185 bits (204), Expect = 1e-41
Identities = 234/319 (73%), Gaps = 2/319 (1%)
Strand=Plus/Minus
Query 171119 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 171178
|| |||||||||||||| ||||| || || ||||| |||||||||||| | || |||||
Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611
Query 171179 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 171238
| || |||||||| || |||||||| || || ||| | | ||||| ||| | |||
Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551
Query 171239 GGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACA 171298
| || || | ||| ||||| ||||| | || || ||| | ||||||| || ||
Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492
Query 171299 ACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAG-AAACATATAA 171357
| || || || | || | || || || ||||| |||||||||| |||| |||||
Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432
Query 171358 CATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAA 171417
|| || || |||||||| || || || |||| ||||||||||||| ||||||||
Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372
Query 171418 CTCTCGTTCATTACACTTC 171436
||||||||| ||||| |||
Sbjct 371 CTCTCGTTCTTTACATTTC 353
>seq250312
Length=8481
Score = 150 bits (166), Expect = 2e-31
Identities = 314/463 (68%), Gaps = 11/463 (2%)
Strand=Plus/Plus
Query 171182 GAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGT 171241
|| |||||||| || | |||| | || || ||| ||| ||||| ||| | | || |
Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633
Query 171242 AGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACT 171301
|| |||||||| |||| ||||| | || || || | | ||||| || || ||
Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693
Query 171302 GAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATT 171361
|||| || || | || |||| ||||| ||||||| ||||| || || |||
Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753
Query 171362 GTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCT 171421
|| || |||||||| || || ||| |||| ||||||| |||| |||||||||||
Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813
Query 171422 CGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATG 171481
|||| ||||| |||||||| ||| | ||| |||| | ||| | | |
Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---ATCTG-----GTTTATTGTGT-TA 1864
Query 171482 GGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGA- 171540
|||||| | || ||||| | |||||| || || || | ||| | ||||| || || ||
Sbjct 1865 GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGAC 1924
Query 171541 TGCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAAT 171600
| || | | | | | || |||| ||| | ||||| | || |||||||| ||
Sbjct 1925 AGTCAATGTCATG-TAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTAT 1983
Query 171601 GGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGAC 171643
|||||||||| ||||| | ||||| || || ||||| ||||||
Sbjct 1984 GGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026
>seq10884
Length=5042
Score = 120 bits (132), Expect = 3e-22
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 171119 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 171178
|| |||||||||||||| ||||| || || ||||| |||||||||||| | || |||||
Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848
Query 171179 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 171238
|| || |||||||| || |||||||| || || ||| ||| ||||| ||| | |||||
Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908
Query 171239 GGTAGTCTCTTCAGTGCAATGCACGGTTC 171267
|| || |||| ||| || || |||||
Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTC 3937
>seq8631
Length=609
Score = 114 bits (126), Expect = 1e-20
Identities = 121/158 (77%), Gaps = 1/158 (1%)
Strand=Plus/Minus
Query 171124 TGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGA 171183
|||||||||||| ||||| || || ||||| |||||||||||| | || ||||| || ||
Sbjct 330 TGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGA 271
Query 171184 ACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAG 171243
|||||||| || |||||||| || || ||| || ||||| ||| | ||||| ||
Sbjct 270 GCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTC 211
Query 171244 TCT-CTTCAGTGCAATGCACGGTTCTCTAGTGACATCT 171280
|| |||||||| ||||| ||||| | || || |||
Sbjct 210 CCTAATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 173
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 566961911025840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |