Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq107965 279 6e-70 seq169634 188 8e-43 seq300680 185 1e-41 seq250312 150 2e-31 seq10884 120 3e-22 seq8631 114 1e-20 >seq107965 Length=6474 Score = 279 bits (308), Expect = 6e-70 Identities = 394/554 (71%), Gaps = 0/554 (0%) Strand=Plus/Plus Query 170879 GCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTAC 170938 || ||||| || || || || || || ||||||||| | || | || || ||||| ||| Sbjct 5921 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATAC 5980 Query 170939 AACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATG 170998 || || |||||||| | || || || | |||||| | |||| | || |||||| Sbjct 5981 AATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 6040 Query 170999 GGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATAC 171058 ||| | |||||||||| | | || || ||| || ||||||| ||| ||||| Sbjct 6041 GGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATAT 6100 Query 171059 TCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCA 171118 ||||| ||||| | || || || || ||| | | || ||| | ||||| || Sbjct 6101 TCAGCTCCTGTTGCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGC 6160 Query 171119 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 171178 || |||||||||||||| ||||| || || ||||| |||||||||||| | || ||||| Sbjct 6161 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 6220 Query 171179 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 171238 || || |||||||| || |||||||| || || ||| ||||||||| ||| | |||| Sbjct 6221 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGC 6280 Query 171239 GGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACA 171298 || || |||||||| ||||| ||||| | || || |||| | | ||||| || || Sbjct 6281 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACC 6340 Query 171299 ACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAAC 171358 || || || | | || | || || | || || | |||||| ||||| ||||| Sbjct 6341 ACAGAAAATAAATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAAT 6400 Query 171359 ATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAAC 171418 || || || | |||||| || || || |||| |||||||| ||||| ||||||||| Sbjct 6401 ATCGTAGCCGTTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAC 6460 Query 171419 TCTCGTTCATTACA 171432 |||||||| ||||| Sbjct 6461 TCTCGTTCTTTACA 6474 >seq169634 Length=720 Score = 188 bits (208), Expect = 8e-43 Identities = 308/441 (70%), Gaps = 2/441 (0%) Strand=Plus/Minus Query 170702 TACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTT 170760 ||| |||| ||||||||||| || |||||||| | ||| | || || || || || Sbjct 441 TACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATT 383 Query 170761 CATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGC 170820 ||| | || ||||| |||||||||||||| ||||| || || || | ||||| ||| Sbjct 382 TATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTA 323 Query 170821 GGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGC 170880 || ||| | ||||| ||||| || || || |||| | |||| |||| || Sbjct 322 TGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCTACTTCTGCAGC 263 Query 170881 AATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAA 170940 ||||| || || || || || || ||||||||||| | | || || ||||| ||||| Sbjct 262 TATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATGGTTATACAA 203 Query 170941 CGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGG 171000 || |||||||| | || || || | |||||| | |||| | || |||||||| Sbjct 202 TGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGG 143 Query 171001 TAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTC 171060 | | |||||||||| | | | || || ||| |||||||||| ||| ||||| || Sbjct 142 TCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTTGTTGCATATTC 83 Query 171061 AGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATT 171120 ||| |||| | || ||| ||| || ||| | | || ||| | ||||| || || Sbjct 82 AGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTT 23 Query 171121 CTCTGATGGTATGCCACTAGG 171141 |||||||||||||| ||||| Sbjct 22 TTCTGATGGTATGCCTCTAGG 2 >seq300680 Length=3790 Score = 185 bits (204), Expect = 1e-41 Identities = 234/319 (73%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 171119 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 171178 || |||||||||||||| ||||| || || ||||| |||||||||||| | || ||||| Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611 Query 171179 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 171238 | || |||||||| || |||||||| || || ||| | | ||||| ||| | ||| Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551 Query 171239 GGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACA 171298 | || || | ||| ||||| ||||| | || || ||| | ||||||| || || Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492 Query 171299 ACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAG-AAACATATAA 171357 | || || || | || | || || || ||||| |||||||||| |||| ||||| Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432 Query 171358 CATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAA 171417 || || || |||||||| || || || |||| ||||||||||||| |||||||| Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372 Query 171418 CTCTCGTTCATTACACTTC 171436 ||||||||| ||||| ||| Sbjct 371 CTCTCGTTCTTTACATTTC 353 >seq250312 Length=8481 Score = 150 bits (166), Expect = 2e-31 Identities = 314/463 (68%), Gaps = 11/463 (2%) Strand=Plus/Plus Query 171182 GAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGT 171241 || |||||||| || | |||| | || || ||| ||| ||||| ||| | | || | Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633 Query 171242 AGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACT 171301 || |||||||| |||| ||||| | || || || | | ||||| || || || Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693 Query 171302 GAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATT 171361 |||| || || | || |||| ||||| ||||||| ||||| || || ||| Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753 Query 171362 GTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCT 171421 || || |||||||| || || ||| |||| ||||||| |||| ||||||||||| Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813 Query 171422 CGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATG 171481 |||| ||||| |||||||| ||| | ||| |||| | ||| | | | Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---ATCTG-----GTTTATTGTGT-TA 1864 Query 171482 GGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGA- 171540 |||||| | || ||||| | |||||| || || || | ||| | ||||| || || || Sbjct 1865 GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGAC 1924 Query 171541 TGCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAAT 171600 | || | | | | | || |||| ||| | ||||| | || |||||||| || Sbjct 1925 AGTCAATGTCATG-TAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTAT 1983 Query 171601 GGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGAC 171643 |||||||||| ||||| | ||||| || || ||||| |||||| Sbjct 1984 GGAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026 >seq10884 Length=5042 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 171119 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 171178 || |||||||||||||| ||||| || || ||||| |||||||||||| | || ||||| Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848 Query 171179 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 171238 || || |||||||| || |||||||| || || ||| ||| ||||| ||| | ||||| Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908 Query 171239 GGTAGTCTCTTCAGTGCAATGCACGGTTC 171267 || || |||| ||| || || ||||| Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTC 3937 >seq8631 Length=609 Score = 114 bits (126), Expect = 1e-20 Identities = 121/158 (77%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 171124 TGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGA 171183 |||||||||||| ||||| || || ||||| |||||||||||| | || ||||| || || Sbjct 330 TGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGA 271 Query 171184 ACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAG 171243 |||||||| || |||||||| || || ||| || ||||| ||| | ||||| || Sbjct 270 GCACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTC 211 Query 171244 TCT-CTTCAGTGCAATGCACGGTTCTCTAGTGACATCT 171280 || |||||||| ||||| ||||| | || || ||| Sbjct 210 CCTAATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566961911025840