Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq293582 118 1e-21
seq294625 109 7e-19
seq161111 98.7 1e-15
seq180108 96.9 4e-15
>seq293582
Length=2029
Score = 118 bits (130), Expect = 1e-21
Identities = 402/620 (65%), Gaps = 6/620 (1%)
Strand=Plus/Plus
Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357
||||| || ||||||||||||||||| || ||||| || || | ||||||||| |||
Sbjct 1291 ATCAAGCACGCGAAATCGCAGTGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAAC 1350
Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417
|| || || ||||| ||||| ||||| || ||||| || |||| ||| ||| ||
Sbjct 1351 GTTAGGCCCGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTTCCGGAG 1410
Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA 33477
|||||||| || || || || ||||| | | || | |||| | | | | | |
Sbjct 1411 AAGAAGATGCCCTCGACACAGGCGAAGGCGACGA-TC-CGCTCCGCGAAGGACTCGGACC 1468
Query 33478 TGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33535
|| ||||| | ||||| | ||||||| | | || || || || || | ||
Sbjct 1469 CGTCGATCCAGCGGAGGGCCCACTGGGCCTTCCGCTGGATGCAGGGGATGGTCTCCACGG 1528
Query 33536 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33595
| | || || ||| || || || || || | || | || | | || || |
Sbjct 1529 CGTGGAACAGCCGGTTCTTCTCGTTGGAGTCCTTGATGTAGGACTCCAGGAGGAGGCTGT 1588
Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655
|||| ||||| || ||||| || ||||| ||||| || |||||||| | ||||| |
Sbjct 1589 ACATCTCCGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCCG 1648
Query 33656 TAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGG 33715
| ||| || || | || ||| | || | ||| || || || ||||| ||
Sbjct 1649 CGACCTGGACCTCCTTCATGAAGCGTCCGGCAAGATTCTCCAGGACGATGCCGTCCGAGG 1708
Query 33716 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 33775
| ||||| || || | || || | || || | ||| | | | | | |||
Sbjct 1709 CGGCAAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCG-CCGTCGGTCAACGACTCC 1767
Query 33776 AATCATTGAT-ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834
|| | | || | |||| || |||||||| | |||||||| || || || ||
Sbjct 1768 CATTGGCGCTGGTCCTGCGATAGGTCGACTTCTTCAGCCGTCCAAAACGAGGCTTCGGCT 1827
Query 33835 TTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGA 33894
||||| ||||| | |||||| | |||| ||||||||| || |||| || |||
Sbjct 1828 TTTTTGTACATTTCCCAGATTTGGGGGTATTTGATTGGGAACATGCAGAATCGATCGGGA 1887
Query 33895 TTTGGTGCAAGGATGGGTTC 33914
||||| || |||| ||||||
Sbjct 1888 TTTGGGGCGAGGAGGGGTTC 1907
>seq294625
Length=4757
Score = 109 bits (120), Expect = 7e-19
Identities = 397/613 (65%), Gaps = 10/613 (2%)
Strand=Plus/Plus
Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359
||| || |||||||||||||| | || ||||||| ||| | |||||||| || ||
Sbjct 4077 CAAGCAGGCGAAATCGCAGTGTAATCCTTCGTCTCGTGAAATCAACTCGTTGGAGAAGGT 4136
Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419
| ||| ||||| | || || || || | ||| || || | ||| ||| || ||
Sbjct 4137 CAATCCAGGCATCAAACCGCGTTTCTTCAACCAGAAGATAGCGCAGAAGCTTCCCGAGAA 4196
Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGCTGTCA 33477
||| || ||||| || ||| |||||||| | | || || ||| | || | ||
Sbjct 4197 GAATATCCCTTCGACGCAAGCGAAGGCAATGATACGTTCCGCA-AACGACTCCG-AGCCA 4254
Query 33478 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537
| |||||| | ||||||| ||||||||| | || ||||| || || || | ||
Sbjct 4255 TCGATCCACCTCATCGCCCAATTGGCCTTCTTCTGGACGCAAGGAATGGTCTCCACAGCG 4314
Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597
||| || | || || || || || | || || |||| | | || |||
Sbjct 4315 CGAAACAGCCTCATCTTGTCGTTGGAGTCCTTGATGTAGGTCTCGAGGAGCAAGCTGTAC 4374
Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657
|| || || |||||||| || || || ||||| |||||||||||| | ||||||||
Sbjct 4375 ATCTCGGAGTGAATGTTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGAGCCTCGGCG 4434
Query 33658 ATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGC 33716
| || || ||| | || | | |||| || | ||||| || |||||||| |||
Sbjct 4435 ACTTGAACCTCT-TTCATGAACCTTCCGGCTAGGTTTTCCAATACGATTCCGTCGGAGGC 4493
Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 33776
|| || || || | || || | || || | | |||| | || || | |||
Sbjct 4494 GGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGTCGTTCGCCGTCGGTGAGGGAGTCCCA 4553
Query 33777 AT--CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834
| | ||| || | || | ||| || || || | ||||| || || || || |||
Sbjct 4554 GTGGCGTTG--GTCCTGTGACAAATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCGGCC 4611
Query 33835 TTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGA 33894
|| || ||||| | ||| || | | || | || ||||| ||| ||||||| ||
Sbjct 4612 TTCTTGTACATTTCCCAAATCTGAGGGTAGCGAATAGGGAACATACAGAATCTATCGGGG 4671
Query 33895 TTTGGTGCAAGGA 33907
|| || |||||||
Sbjct 4672 TTAGGAGCAAGGA 4684
>seq161111
Length=12134
Score = 98.7 bits (108), Expect = 1e-15
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431
||||| || || | || | ||| || | ||| | || | ||||||||||||||| ||
Sbjct 5271 CCTCCTTGGTCAACATAACGAGCTGTATCATTGAAGACACGCAACATTGGAATAATGCCA 5212
Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63491
|| ||| | ||||| || || || || |||||| | | ||| |||||| || ||
Sbjct 5211 TTGGATGTGCCATTTGTTCCACGTATGTAACTTCCAGTTGAACGGATATTATGAACAGAG 5152
Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551
| ||| ||||| ||||| ||| ||| | || ||| || || |||||||| ||
Sbjct 5151 ACACCAATTCCTCCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTGTCATATATG 5092
Query 63552 CCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593
|| || ||||||||||| ||||| | ||||| ||||||
Sbjct 5091 CCTTCAATGCTATCATCTTTCATGCATATCAGAAAGCAGCTA 5050
>seq180108
Length=14591
Score = 96.9 bits (106), Expect = 4e-15
Identities = 155/222 (70%), Gaps = 3/222 (1%)
Strand=Plus/Plus
Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431
||||| || || | || | || || | ||| | || | ||||||||||||||| ||
Sbjct 8328 CCTCCTTGGTCAACATAACGGGCAGTATCATTGAAGACACGCAACATTGGAATAATGCCA 8387
Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63491
|| ||| ||||||| || || || || |||||| | |||||||||||| || ||
Sbjct 8388 TTGGATGTACCATTTGTTCCACGTATGTAACTTCCAGTTGCACGAATATTATGAACAGAG 8447
Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551
| ||| ||||| ||||| ||| ||| | || ||| || || |||||||| ||
Sbjct 8448 ACACCAATTCCTCCTGC---TTTGCTGATAACAGCACATTCCTTGAAAGTGTCATATATG 8504
Query 63552 CCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593
|| || ||||||||| | ||||| | || || ||||||
Sbjct 8505 CCTTCAATGCTATCACCTTTCATGCATATCAGGAAGCAGCTA 8546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 619334838202960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |