Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq228143 89.7 5e-13 seq277754 87.8 2e-12 seq62239 86.0 6e-12 >seq228143 Length=6931 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || || ||||| | ||||| | ||| | ||| | Sbjct 2641 ATGCAGATTTTTGTGAAAACCTTGACCGGAAAGACCATCACATTAGAAGTTGAAAGCTCC 2700 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| ||||| ||||||||||| || ||||| || || Sbjct 2701 GACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCAG 2760 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| |||| || ||| || || || ||||| | ||| | | |||||| ||| Sbjct 2761 CAGAGACTTATTTTCGCCGGAAAGCAGCTGGAAGACGGCCGAACCCTTGCCGACTACAAC 2820 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || | || ||||||| Sbjct 2821 ATCCAGAAGGAGTCGACCCTTCACTTGGTCCT 2852 Score = 82.4 bits (90), Expect = 7e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 2472 CGACACCATCGATAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCA 2531 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || |||||||| | | ||| ||||| ||||| || | ||| | || ||||| || Sbjct 2532 GCAGAGACTCATCTTTGCCGGTAAACAGCTCGAGGACGGCCGAACCCTCGCAGACTACAA 2591 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || ||||| || ||||| ||||||| Sbjct 2592 CATCCAGAAGGAATCCACCCTCCATTTGGTCCT 2624 >seq277754 Length=2847 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 26860 CCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCG 26919 ||||||| ||||| || || || || || ||| | ||||| | || ||| |||||||||| Sbjct 2669 CCGACAAGGAAGGCATCCCACCGGACCAGCAACGGCTCATCTTCGCCGGAAAACAACTCG 2728 Query 26920 AAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTG 26975 | || | ||||| | | |||||| ||||| ||||| || ||||| |||||||| Sbjct 2729 AGGACGGTAGAACCCTAGCCGACTACAACATCCAAAAGGAGTCTACGCTCCATCTG 2784 >seq62239 Length=9780 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || ||| | || ||| | || | ||||| Sbjct 5560 AAGATGCAGATCTTCGTGAAAACCCTAACCGGGAAAACCATAACCCTAGAGGTCGAATCC 5501 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | ||||| ||||| ||||| ||||| || || || || Sbjct 5500 TCCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCGCCGGAC 5441 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || ||| | ||||| | || ||| || || ||||| || | || | | | |||||| Sbjct 5440 CAGCAACGCCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGCAGGACCCTAGCCGACTAC 5381 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || || |||| || ||||| Sbjct 5380 AACATCCAGAAGGAGTCCACCCTCCACCTCGTCCT 5346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475886720508320