Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq228143 89.7 5e-13
seq277754 87.8 2e-12
seq62239 86.0 6e-12
>seq228143
Length=6931
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| ||||| || || ||||| | ||||| | ||| | ||| |
Sbjct 2641 ATGCAGATTTTTGTGAAAACCTTGACCGGAAAGACCATCACATTAGAAGTTGAAAGCTCC 2700
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| || | ||||| ||||| ||||||||||| || ||||| || ||
Sbjct 2701 GACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCAG 2760
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| ||||| |||| || ||| || || || ||||| | ||| | | |||||| |||
Sbjct 2761 CAGAGACTTATTTTCGCCGGAAAGCAGCTGGAAGACGGCCGAACCCTTGCCGACTACAAC 2820
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|| || || || || || | || |||||||
Sbjct 2821 ATCCAGAAGGAGTCGACCCTTCACTTGGTCCT 2852
Score = 82.4 bits (90), Expect = 7e-11
Identities = 110/153 (72%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887
|||||||||||| | ||||| ||||| ||||| ||||| || || || || ||
Sbjct 2472 CGACACCATCGATAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCA 2531
Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947
|| |||||||| | | ||| ||||| ||||| || | ||| | || ||||| ||
Sbjct 2532 GCAGAGACTCATCTTTGCCGGTAAACAGCTCGAGGACGGCCGAACCCTCGCAGACTACAA 2591
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||| || || ||||| || ||||| |||||||
Sbjct 2592 CATCCAGAAGGAATCCACCCTCCATTTGGTCCT 2624
>seq277754
Length=2847
Score = 87.8 bits (96), Expect = 2e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 26860 CCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCG 26919
||||||| ||||| || || || || || ||| | ||||| | || ||| ||||||||||
Sbjct 2669 CCGACAAGGAAGGCATCCCACCGGACCAGCAACGGCTCATCTTCGCCGGAAAACAACTCG 2728
Query 26920 AAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTG 26975
| || | ||||| | | |||||| ||||| ||||| || ||||| ||||||||
Sbjct 2729 AGGACGGTAGAACCCTAGCCGACTACAACATCCAAAAGGAGTCTACGCTCCATCTG 2784
>seq62239
Length=9780
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|| ||||| | || || ||||| |||| || ||| | || ||| | || | |||||
Sbjct 5560 AAGATGCAGATCTTCGTGAAAACCCTAACCGGGAAAACCATAACCCTAGAGGTCGAATCC 5501
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
|||||||||||| | ||||| ||||| ||||| ||||| || || || ||
Sbjct 5500 TCCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCGCCGGAC 5441
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
|| ||| | ||||| | || ||| || || ||||| || | || | | | ||||||
Sbjct 5440 CAGCAACGCCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGCAGGACCCTAGCCGACTAC 5381
Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||||| || || || || || |||| || |||||
Sbjct 5380 AACATCCAGAAGGAGTCCACCCTCCACCTCGTCCT 5346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475886720508320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |