Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq294625 91.5 4e-13
seq102735 91.5 4e-13
seq180108 86.0 2e-11
>seq294625
Length=4757
Score = 91.5 bits (100), Expect = 4e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 22738 TGCGAGGCGTTACCAGTAAG-TCTCATTGGTATCAATGCCGAATCAATGAGTACATATAT 22796
||||| |||||||| || | |||| | || || |||| || ||||||| || ||
Sbjct 3989 TGCGACGCGTTACC-GTGCGCTCTCGTGGGGATGAATGGTGACCTCATGAGTAAGTACAT 3931
Query 22797 TAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGT 22856
| || ||||| || | || || | ||| | || | || || || ||||
Sbjct 3930 CGAGTTCGTTGCTGACAGGCTTTTGGTGTCATTGGGATGTGGGAAATTGTACAACGCACA 3871
Query 22857 TAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAA 22916
|||||||| || |||||||| || ||||| | |||| ||||| ||||||||||| ||
Sbjct 3870 GAATCCATTCGATTGGATGGAGCTGATTTCGTTACAAGGGAAGACGAATTTCTTCGAGAA 3811
Query 22917 AAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950
||||||||| || || || |||||| ||| |||
Sbjct 3810 AAGAGTTGGAGAGTATCAGAAAGCATCTGTGATG 3777
>seq102735
Length=7826
Score = 91.5 bits (100), Expect = 4e-13
Identities = 96/124 (77%), Gaps = 2/124 (2%)
Strand=Plus/Minus
Query 111702 CAGTTTTATGTA-CACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATAT 111760
||||| ||||| ||| |||| | | || || ||||||||||| ||||||||||||||
Sbjct 7057 CAGTTCTATGTGGCAC-ACGGAGAGTTATCTTGTCAAATGTATCAACGATCTGCTGATAT 6999
Query 111761 TGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820
||||||||||||||||||||||| ||| || || | | || ||| | ||||| ||
Sbjct 6998 GGGTCTTGGTGTTCCGTTTAATATAGCATCGTATGCCTTGTTGACATGCATGATCGCCCA 6939
Query 111821 TTTT 111824
| ||
Sbjct 6938 TGTT 6935
>seq180108
Length=14591
Score = 86.0 bits (94), Expect = 2e-11
Identities = 156/221 (71%), Gaps = 8/221 (4%)
Strand=Plus/Minus
Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681
||||| | ||| ||| || || || | |||||| | ||| | |||||| |||| |
Sbjct 8527 ATGAAAGGTGATAGCATTGAAGGCATATATGACACTTTCAAGGAATGTGCTGTTAT---C 8471
Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740
| || ||||| ||||||||||| || | || ||| ||||||| || | | ||||||||
Sbjct 8470 AGCAAAGCAGGAGGAATTGGTGTCTCTGTTCATAATATTCGTGCAACTGGA-AGTTACAT 8412
Query 363741 TCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799
|| || ||| || ||| || ||||| | |||| ||| | ||||| || | |||
Sbjct 8411 ACGTGGAACAAATGG-TACATCCAATGGCATTATTCCAATGTTGCGTGTCTTCAATGATA 8353
Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840
|||| | || || ||||| || || || ||| | ||||||
Sbjct 8352 CTGCCCGTTATGTTGACCAAGGAGGTGGCAAGAG-AAAGGG 8313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1295606732574492
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |