Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq294625 91.5 4e-13 seq102735 91.5 4e-13 seq180108 86.0 2e-11 >seq294625 Length=4757 Score = 91.5 bits (100), Expect = 4e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 22738 TGCGAGGCGTTACCAGTAAG-TCTCATTGGTATCAATGCCGAATCAATGAGTACATATAT 22796 ||||| |||||||| || | |||| | || || |||| || ||||||| || || Sbjct 3989 TGCGACGCGTTACC-GTGCGCTCTCGTGGGGATGAATGGTGACCTCATGAGTAAGTACAT 3931 Query 22797 TAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGT 22856 | || ||||| || | || || | ||| | || | || || || |||| Sbjct 3930 CGAGTTCGTTGCTGACAGGCTTTTGGTGTCATTGGGATGTGGGAAATTGTACAACGCACA 3871 Query 22857 TAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAA 22916 |||||||| || |||||||| || ||||| | |||| ||||| ||||||||||| || Sbjct 3870 GAATCCATTCGATTGGATGGAGCTGATTTCGTTACAAGGGAAGACGAATTTCTTCGAGAA 3811 Query 22917 AAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 ||||||||| || || || |||||| ||| ||| Sbjct 3810 AAGAGTTGGAGAGTATCAGAAAGCATCTGTGATG 3777 >seq102735 Length=7826 Score = 91.5 bits (100), Expect = 4e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 111702 CAGTTTTATGTA-CACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATAT 111760 ||||| ||||| ||| |||| | | || || ||||||||||| |||||||||||||| Sbjct 7057 CAGTTCTATGTGGCAC-ACGGAGAGTTATCTTGTCAAATGTATCAACGATCTGCTGATAT 6999 Query 111761 TGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 ||||||||||||||||||||||| ||| || || | | || ||| | ||||| || Sbjct 6998 GGGTCTTGGTGTTCCGTTTAATATAGCATCGTATGCCTTGTTGACATGCATGATCGCCCA 6939 Query 111821 TTTT 111824 | || Sbjct 6938 TGTT 6935 >seq180108 Length=14591 Score = 86.0 bits (94), Expect = 2e-11 Identities = 156/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| | ||| ||| || || || | |||||| | ||| | |||||| |||| | Sbjct 8527 ATGAAAGGTGATAGCATTGAAGGCATATATGACACTTTCAAGGAATGTGCTGTTAT---C 8471 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 | || ||||| ||||||||||| || | || ||| ||||||| || | | |||||||| Sbjct 8470 AGCAAAGCAGGAGGAATTGGTGTCTCTGTTCATAATATTCGTGCAACTGGA-AGTTACAT 8412 Query 363741 TCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 || || ||| || ||| || ||||| | |||| ||| | ||||| || | ||| Sbjct 8411 ACGTGGAACAAATGG-TACATCCAATGGCATTATTCCAATGTTGCGTGTCTTCAATGATA 8353 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 |||| | || || ||||| || || || ||| | |||||| Sbjct 8352 CTGCCCGTTATGTTGACCAAGGAGGTGGCAAGAG-AAAGGG 8313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1295606732574492