Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq228143 102 7e-17
seq284040 91.5 1e-13
seq25275 91.5 1e-13
seq145598 86.0 5e-12
seq62239 82.4 7e-11
>seq228143
Length=6931
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| ||||| || || ||||| | || || | ||||| || | |
Sbjct 2641 ATGCAGATTTTTGTGAAAACCTTGACCGGAAAGACCATCACATTAGAAGTTGAAAGCTCC 2700
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | ||||| ||||| |||||||||||||| ||||| || ||
Sbjct 2701 GACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCAG 2760
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|||||||| |||| || ||| ||||| || ||||| | | ||| | | ||| || |||
Sbjct 2761 CAGAGACTTATTTTCGCCGGAAAGCAGCTGGAAGACGGCCGAACCCTTGCCGACTACAAC 2820
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199
|| || || || || || |||| || ||
Sbjct 2821 ATCCAGAAGGAGTCGACCCTTCACTTGGT 2849
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || || || | ||||| ||| | || || | || |||||| | |
Sbjct 2413 ATGCAGATCTTCGTCAAGACCCTCACTGGGAAAACCATCACTTTGGAGGTCGAGAGCTCC 2472
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | ||||| ||||| ||||| |||||||| || || || ||
Sbjct 2473 GACACCATCGATAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 2532
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|||||||| || | | ||| || || ||||| || | | ||| | || || || |||
Sbjct 2533 CAGAGACTCATCTTTGCCGGTAAACAGCTCGAGGACGGCCGAACCCTCGCAGACTACAAC 2592
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199
|| || || ||||| || | ||||| ||
Sbjct 2593 ATCCAGAAGGAATCCACCCTCCATTTGGT 2621
>seq284040
Length=2693
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || ||||| |||| || ||| | || || | || |||||| | |
Sbjct 303 ATGCAGATCTTCGTCAAAACCCTAACCGGCAAAACAATCACTCTGGAGGTCGAGAGCTCC 362
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| || ||||| | ||||| ||||| ||||| ||||| || |||||||||||
Sbjct 363 GATACGATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCCGATCAG 422
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169
||| | || || | || ||| ||||| || || || | ||||| | | ||| || || ||
Sbjct 423 CAGCGCCTCATCTTCGCCGGAAAGCAGCTGGAGGACGGCAGAACCCT-AGCGGACTACAA 481
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203
||| || || ||||| || ||||| | ||| ||
Sbjct 482 CATCCAGAAGGAATCGACTCTTCATCTGGTGCTA 515
>seq25275
Length=8276
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || ||||| || ||||| | || || |||| || ||| | |
Sbjct 5475 ATGCAGATCTTTGTGAAGACATTGACCGGAAAGACCATCACTCTCGAGGTTGAGAGCTCC 5534
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | || || |||||| || || || || || || || || ||
Sbjct 5535 GACACCATCGACAACGTGAAGGCTAAGATTCAAGATAAGGAGGGTATCCCACCAGACCAG 5594
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169
||||| ||||| | | || ||||| ||||| |||| | ||| || || || ||
Sbjct 5595 CAGAGGCTGATCTTTGCGGGTAAGCAGCTCGAGGATGGTCG-TACGCTTGCTGACTACAA 5653
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218
|||||| || ||||| || ||||||| || | |||||||||| |||
Sbjct 5654 CATTCAGAAGGAATCGACCCTTCATTTGGTTCTTCGATTGAGAGGTGGA 5702
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || || || ||||| | || || | ||||| ||| | |
Sbjct 5247 ATGCAGATCTTTGTGAAGACTTTGACCGGAAAGACCATCACACTGGAAGTTGAGAGCTCC 5306
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | || || || || || ||||| || || || || || |||
Sbjct 5307 GACACCATCGACAACGTGAAGGCGAAAATCCAAGATAAAGAGGGAATCCCACCAGACCAA 5366
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| ||| |||| | | ||||||||| || || |||| | | | | | || || |||
Sbjct 5367 CAAAGATTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTTGCAGACTACAAC 5426
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
||||| || ||||| || |||| || ||| | |||||||||| ||
Sbjct 5427 ATTCAGAAGGAATCAACCCTTCACTTGGTGCTTCGATTGAGAGGTGG 5473
>seq145598
Length=10865
Score = 86.0 bits (94), Expect = 5e-12
Identities = 109/145 (75%), Gaps = 5/145 (3%)
Strand=Plus/Minus
Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143
|||||||| || || ||||| ||||||||||| |||||| | ||||||||| | ||
Sbjct 9643 GACAAAGAGGGTATCCCTCCAGATCAACAGAGGTTGATTTTTGCTGGCAAGCAATTAGAG 9584
Query 24144 GAT-GACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGT 24201
||| ||| | || | || || || ||||| || |||||||| ||| | ||| | ||
Sbjct 9583 GATGGACGAACACTT--GCTGACTACAACATCCAGAAAGAATCAACACTCCATCTTGTTC 9526
Query 24202 TAAGATTGAGAGGAGG-ACTATAAT 24225
||||| |||| ||||| ||||| ||
Sbjct 9525 TAAGACTGAGGGGAGGAACTATGAT 9501
>seq62239
Length=9780
Score = 82.4 bits (90), Expect = 7e-11
Identities = 138/200 (69%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|| ||||| | || || ||||| |||| || ||| | || ||| | || ||||| ||
Sbjct 5560 AAGATGCAGATCTTCGTGAAAACCCTAACCGGGAAAACCATAACCCTAGAGGTCGAATCC 5501
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
|||||||||||| | ||||| ||||| ||||| |||||||| || || ||
Sbjct 5500 TCCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCGCCGGAC 5441
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167
|| || | || || | || ||| ||||| ||||| || | ||| | | | ||| ||
Sbjct 5440 CAGCAACGCCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGCAGGACCCTAGCCGACTAC 5381
Query 24168 AACATTCAAAAAGAATCTAC 24187
||||| || || || || ||
Sbjct 5380 AACATCCAGAAGGAGTCCAC 5361
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427505204465430
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |