Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq228143 102 7e-17 seq284040 91.5 1e-13 seq25275 91.5 1e-13 seq145598 86.0 5e-12 seq62239 82.4 7e-11 >seq228143 Length=6931 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || || ||||| | || || | ||||| || | | Sbjct 2641 ATGCAGATTTTTGTGAAAACCTTGACCGGAAAGACCATCACATTAGAAGTTGAAAGCTCC 2700 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||||| |||||||||||||| ||||| || || Sbjct 2701 GACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCAG 2760 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| |||| || ||| ||||| || ||||| | | ||| | | ||| || ||| Sbjct 2761 CAGAGACTTATTTTCGCCGGAAAGCAGCTGGAAGACGGCCGAACCCTTGCCGACTACAAC 2820 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || || || || || |||| || || Sbjct 2821 ATCCAGAAGGAGTCGACCCTTCACTTGGT 2849 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| ||| | || || | || |||||| | | Sbjct 2413 ATGCAGATCTTCGTCAAGACCCTCACTGGGAAAACCATCACTTTGGAGGTCGAGAGCTCC 2472 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| |||||||| || || || || Sbjct 2473 GACACCATCGATAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 2532 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | | ||| || || ||||| || | | ||| | || || || ||| Sbjct 2533 CAGAGACTCATCTTTGCCGGTAAACAGCTCGAGGACGGCCGAACCCTCGCAGACTACAAC 2592 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || || ||||| || | ||||| || Sbjct 2593 ATCCAGAAGGAATCCACCCTCCATTTGGT 2621 >seq284040 Length=2693 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || ||| | || || | || |||||| | | Sbjct 303 ATGCAGATCTTCGTCAAAACCCTAACCGGCAAAACAATCACTCTGGAGGTCGAGAGCTCC 362 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | ||||| ||||| ||||| ||||| || ||||||||||| Sbjct 363 GATACGATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCCGATCAG 422 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||| | || || | || ||| ||||| || || || | ||||| | | ||| || || || Sbjct 423 CAGCGCCTCATCTTCGCCGGAAAGCAGCTGGAGGACGGCAGAACCCT-AGCGGACTACAA 481 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 ||| || || ||||| || ||||| | ||| || Sbjct 482 CATCCAGAAGGAATCGACTCTTCATCTGGTGCTA 515 >seq25275 Length=8276 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||||| || ||||| | || || |||| || ||| | | Sbjct 5475 ATGCAGATCTTTGTGAAGACATTGACCGGAAAGACCATCACTCTCGAGGTTGAGAGCTCC 5534 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| || || || || || || || || || Sbjct 5535 GACACCATCGACAACGTGAAGGCTAAGATTCAAGATAAGGAGGGTATCCCACCAGACCAG 5594 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| ||||| | | || ||||| ||||| |||| | ||| || || || || Sbjct 5595 CAGAGGCTGATCTTTGCGGGTAAGCAGCTCGAGGATGGTCG-TACGCTTGCTGACTACAA 5653 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||| || ||||| || ||||||| || | |||||||||| ||| Sbjct 5654 CATTCAGAAGGAATCGACCCTTCATTTGGTTCTTCGATTGAGAGGTGGA 5702 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || ||||| | || || | ||||| ||| | | Sbjct 5247 ATGCAGATCTTTGTGAAGACTTTGACCGGAAAGACCATCACACTGGAAGTTGAGAGCTCC 5306 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || || || || ||||| || || || || || ||| Sbjct 5307 GACACCATCGACAACGTGAAGGCGAAAATCCAAGATAAAGAGGGAATCCCACCAGACCAA 5366 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||| | | ||||||||| || || |||| | | | | | || || ||| Sbjct 5367 CAAAGATTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTTGCAGACTACAAC 5426 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || ||||| || |||| || ||| | |||||||||| || Sbjct 5427 ATTCAGAAGGAATCAACCCTTCACTTGGTGCTTCGATTGAGAGGTGG 5473 >seq145598 Length=10865 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/145 (75%), Gaps = 5/145 (3%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 |||||||| || || ||||| ||||||||||| |||||| | ||||||||| | || Sbjct 9643 GACAAAGAGGGTATCCCTCCAGATCAACAGAGGTTGATTTTTGCTGGCAAGCAATTAGAG 9584 Query 24144 GAT-GACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGT 24201 ||| ||| | || | || || || ||||| || |||||||| ||| | ||| | || Sbjct 9583 GATGGACGAACACTT--GCTGACTACAACATCCAGAAAGAATCAACACTCCATCTTGTTC 9526 Query 24202 TAAGATTGAGAGGAGG-ACTATAAT 24225 ||||| |||| ||||| ||||| || Sbjct 9525 TAAGACTGAGGGGAGGAACTATGAT 9501 >seq62239 Length=9780 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || ||| | || ||| | || ||||| || Sbjct 5560 AAGATGCAGATCTTCGTGAAAACCCTAACCGGGAAAACCATAACCCTAGAGGTCGAATCC 5501 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| |||||||| || || || Sbjct 5500 TCCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCGCCGGAC 5441 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || || | || || | || ||| ||||| ||||| || | ||| | | | ||| || Sbjct 5440 CAGCAACGCCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGCAGGACCCTAGCCGACTAC 5381 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 5380 AACATCCAGAAGGAGTCCAC 5361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427505204465430