Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq228143 111 1e-19
seq284040 105 5e-18
seq25275 105 5e-18
seq277754 104 2e-17
seq259261 102 7e-17
seq243249 98.7 8e-16
seq62239 91.5 1e-13
seq13062 89.7 4e-13
seq141081 86.0 5e-12
>seq228143
Length=6931
Score = 111 bits (122), Expect = 1e-19
Identities = 154/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || || |||||||| || |||||||||||||| | |||| | ||||
Sbjct 2852 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCGGCCGTCT 2793
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| || || || || ||||||| | ||| ||||| ||| | ||| ||||||||
Sbjct 2792 TCCAGCTGCTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCT 2733
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || ||| || | | | | |||||| | || ||| | |||||||
Sbjct 2732 TGGATCTTGGC--CTTGACGTTGTCAATGGTGTCGGAGCTTTCAACTTCTAATGTGATGG 2675
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| |||||||||| ||||| ||||||||||||||
Sbjct 2674 TCTTTCCGGTCAAGGTTTTCACAAAAATCTGCAT 2641
Score = 93.3 bits (102), Expect = 3e-14
Identities = 163/232 (70%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
|||||| | ||||| || || | ||| || || |||||||| || |||||||| || ||
Sbjct 3324 CCCTCCCCTTAGCCGAAGCACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGC 3265
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
|| || | || |||||||| || || ||| | || | || ||| |||||| ||
Sbjct 3264 CAACGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGG 3205
Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC- 16884
| ||| || || || || || || |||||| | | | | ||||| || |||
Sbjct 3204 GATGCCTTCCTTATCCTGGATCTTAGC--CTTCACATTGTCAATGGTGTC--CGAACTCT 3149
Query 16885 CGTT-TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| |||| |||||||| ||||| |||| ||| || ||||||||||||||
Sbjct 3148 CGACCTCCAAAGTGATGGTCTTTCCAGTCAACGTCTTAACAAAAATCTGCAT 3097
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||| || ||||| ||||| || ||||||||||| || | |||| | |||||
Sbjct 2624 AGGACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTTCGGCCGTCC 2565
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|| | ||||| || ||| | || || | ||| ||||| || | ||| || |||||
Sbjct 2564 TCGAGCTGTTTACCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 2505
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || ||| || | | | |||||| | ||| |||| |||||||
Sbjct 2504 TGGATCTTGGC--CTTGACGTTATCGATGGTGTCGGAGCTCTCGACCTCCAAAGTGATGG 2447
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| || || || || ||||| || ||||||||
Sbjct 2446 TTTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 2413
>seq284040
Length=2693
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
|||||| | | || ||| |||| ||||| |||||||||||| || |||||||| |||||
Sbjct 986 CCCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGC 927
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
|| || | |||| || | || ||||| || | || | ||||| |||||| ||
Sbjct 926 CAAAGTCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGG 867
Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887
| || || ||||| ||| | | |||||| | | | |||||| | |||
Sbjct 866 GATTCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCAC 807
Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| ||||| ||||||||||||| ||| || || || ||||||||
Sbjct 806 CTCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 759
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
||| || || |||| || |||| ||| || || || ||||| || ||||||||||| ||
Sbjct 530 CCCGCCGCGAAGCCGTAGCACCAGATGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGC 471
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
| |||| || ||||||||| || || || || | || || ||||| || || |||
Sbjct 470 TAGGGTTCTGCCGTCCTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCGGGAGG 411
Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887
| || || ||||| || | | ||| || | | | | || ||| | |||
Sbjct 410 AATTCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTATCGGAGCTCTCGAC 351
Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| ||||| ||||| ||||| || |||||||| || ||||||||
Sbjct 350 CTCCAGAGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 303
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || || |||||||| || ||||||||||| || | |||| || ||||||||| ||
Sbjct 733 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCTGCCGTCCTCCAGCTGC 674
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852
|| || || | || || ||||| || ||| ||| | || || ||||| || | |
Sbjct 673 TTCCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTC 614
Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912
||| || | | | || ||| | ||| |||| |||||||| || |||||
Sbjct 613 GCCTTGACGTTATCGATCGTATCGGAGCTCTCGACCTCCAGAGTGATGGTCTTGCCGGTT 554
Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935
|| |||||||| || ||||||||
Sbjct 553 AGGGTTTTGACGAAGATCTGCAT 531
>seq25275
Length=8276
Score = 105 bits (116), Expect = 5e-18
Identities = 154/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || ||||||||||| ||||||||||| ||||||| || |||||
Sbjct 5230 AGAACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCCAAAGTGCGACCGTCC 5171
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|| | || ||||| ||| | || | || ||| ||||| || | ||||| |||||
Sbjct 5170 TCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCT 5111
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-CGT-TTCCACGGTGATGG 16901
|||| | |||||| | | | |||||| || |||| || ||||| |||||||
Sbjct 5110 TGGATTTTCGCCTTCACGTTATCGATAGTGTC--CGAGCTCTCGACTTCCAACGTGATGG 5053
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| || || || ||||||||||| || |||||
Sbjct 5052 TTTTCCCTGTTAGGGTTTTGACAAAGATTTGCAT 5019
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || || || ||||| || ||||||||||| || | ||| | | |||
Sbjct 5458 AGCACCAAGTGAAGGGTTGATTCCTTCTGAATGTTGTAGTCTGCAAGGGTACGGCCATCC 5399
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|| | || ||||| ||| | || | | |||||||| || | |||||||| ||
Sbjct 5398 TCAAGCTGCTTGCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATTCCCTCTTTATCT 5339
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
|||| | |||||| | | | | |||||| | ||| ||||| ||||||||
Sbjct 5338 TGGATTTTCGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAACTTCCAGTGTGATGGTC 5279
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||||||||| || || ||||| ||||||||
Sbjct 5278 TTTCCGGTCAAAGTCTTCACAAAGATCTGCAT 5247
>seq277754
Length=2847
Score = 104 bits (114), Expect = 2e-17
Identities = 145/205 (71%), Gaps = 9/205 (4%)
Strand=Plus/Minus
Query 16729 CATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAA 16788
|| ||| ||||| ||||||||||| |||||||||||||| | |||| | ||||||| |
Sbjct 2784 CAGATGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCCTCGAG 2725
Query 16789 TTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAAT 16848
|||||| || || | || ||||| || |||||| || | ||| || ||||||||
Sbjct 2724 TTGTTTTCCGGCGAAGATGAGCCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCGGC--- 2668
Query 16849 TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCC 16908
||||| | | | |||||| || ||| |||| || ||||| || ||
Sbjct 2667 ------TTTCACGTTGTAGATGGTGTCGGAGGACTCAACCTCCAGCGTTATGGTCTTGCC 2614
Query 16909 GGTCAGCGTTTTGACAAAAATCTGC 16933
||| || ||||| || || ||||||
Sbjct 2613 GGTTAGGGTTTTCACGAAGATCTGC 2589
>seq259261
Length=7884
Score = 102 bits (112), Expect = 7e-17
Identities = 154/217 (71%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || ||||||||||| || |||||||||||||| | ||| || |||||
Sbjct 2587 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCCGTCC 2528
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|| | ||||| || || | || || ||||| |||||| || | ||| || |||||
Sbjct 2527 TCGAGCTGTTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCC 2468
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || |||||| | | | | |||||| || || |||| ||||| |
Sbjct 2467 TGGATCTTGGC--CTTCACGTTGTCGATCGTGTCGGAGGATTCGACCTCCAACGTGATCG 2410
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938
| || || || || ||||| || || |||||||||||
Sbjct 2409 TCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2373
>seq243249
Length=1014
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/205 (70%), Gaps = 9/205 (4%)
Strand=Plus/Plus
Query 16729 CATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAA 16788
||||| | | ||||||||||||| ||| |||||||||| | |||| || ||||||| |
Sbjct 746 CATATAGACCATGGACTCCTTTTGGATGCTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAG 805
Query 16789 TTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAAT 16848
||||| || || | || ||||| || |||||| || | ||| || ||||||||
Sbjct 806 CTGTTTTCCGGCGAAGATGAGCCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCGGC--- 862
Query 16849 TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCC 16908
||||| | | | |||||| || ||| |||| || ||||| || ||
Sbjct 863 ------TTTCACGTTGTAGATGGTGTCGGAGGACTCAACCTCCAACGTTATGGTCTTGCC 916
Query 16909 GGTCAGCGTTTTGACAAAAATCTGC 16933
||| || ||||| ||||| ||||||
Sbjct 917 GGTTAGAGTTTTCACAAAGATCTGC 941
>seq62239
Length=9780
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/208 (70%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || ||||||||||| || |||||||||||||| | ||| || ||||||| | ||
Sbjct 5355 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCCGTCCTCGAGCTGC 5414
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850
|| || || | || || || || |||||| || | ||| || ||||| || ||
Sbjct 5415 TTCCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCTTG 5474
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
|| ||| || | | | | |||||| || || || | ||| |||||||| ||||
Sbjct 5475 GC--CTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCTAGGGTTATGGTTTTCCCGG 5532
Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTT 16938
| || ||||| || || |||||||| ||
Sbjct 5533 TTAGGGTTTTCACGAAGATCTGCATCTT 5560
>seq13062
Length=30343
Score = 89.7 bits (98), Expect = 4e-13
Identities = 140/202 (69%), Gaps = 9/202 (4%)
Strand=Plus/Plus
Query 16732 ATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTG 16791
||| |||||||||||||| | |||||||||||||| | ||||||| ||||||| | |
Sbjct 28576 ATGGAGCGTGGACTCCTTCTAGATGTTGTAGTCGGCTAGGGTTTTGCCGTCCTCGAGCTA 28635
Query 16792 TTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTG 16851
||| | | | || || || || ||||||| || | ||| || ||||||||
Sbjct 28636 TTTTTCGTCGAAGATGAGGCGTTGCTGGTCCAACGGGATGCCTTCCTTGTCGGC------ 28689
Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911
||||| | | | |||||| || ||| |||| || ||||| || |||||
Sbjct 28690 ---TTTCACGTTGTAGATGGTGTCGGAGGACTCAACCTCCAATGTTATGGTCTTGCCGGT 28746
Query 16912 CAGCGTTTTGACAAAAATCTGC 16933
|| ||||| || || ||||||
Sbjct 28747 TAGGGTTTTTACGAAGATCTGC 28768
>seq141081
Length=4874
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/210 (70%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||| || ||||||||||| || | ||||||||| || | |||| ||||
Sbjct 2008 AGGACCAAATGGAGAGTGGACTCCTTCTGGACGTTGTAGTCAGCAAGGGTTCGACCGTCT 2067
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| |||||| | ||| ||||||| | ||| ||||| | ||| | || ||||||||
Sbjct 2068 TCCAGTTGTTTTCTAGCAAAAATAAGTCTCTGCTGGTCTAGAGGGATGCATTCTTTGTCT 2127
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || ||||| | | | |||||||| | || || | |||||||
Sbjct 2128 TGGATCTTGGC--CTTCATGTTGTCAACAGTGTCTGAGCTTTCGACCTCTAAAGTGATGG 2185
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCT 16931
| ||| | |||| || || || |||| ||
Sbjct 2186 TCTTTTCAGTCAAAGTCTTCACCAAAACCT 2215
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 402797691438940
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |