Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq228143 111 1e-19 seq284040 105 5e-18 seq25275 105 5e-18 seq277754 104 2e-17 seq259261 102 7e-17 seq243249 98.7 8e-16 seq62239 91.5 1e-13 seq13062 89.7 4e-13 seq141081 86.0 5e-12 >seq228143 Length=6931 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||||||||| | |||| | |||| Sbjct 2852 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCGGCCGTCT 2793 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || || || || ||||||| | ||| ||||| ||| | ||| |||||||| Sbjct 2792 TCCAGCTGCTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCT 2733 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | |||||| | || ||| | ||||||| Sbjct 2732 TGGATCTTGGC--CTTGACGTTGTCAATGGTGTCGGAGCTTTCAACTTCTAATGTGATGG 2675 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | |||||||||| ||||| |||||||||||||| Sbjct 2674 TCTTTCCGGTCAAGGTTTTCACAAAAATCTGCAT 2641 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| | ||||| || || | ||| || || |||||||| || |||||||| || || Sbjct 3324 CCCTCCCCTTAGCCGAAGCACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGC 3265 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | || |||||||| || || ||| | || | || ||| |||||| || Sbjct 3264 CAACGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGG 3205 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC- 16884 | ||| || || || || || || |||||| | | | | ||||| || ||| Sbjct 3204 GATGCCTTCCTTATCCTGGATCTTAGC--CTTCACATTGTCAATGGTGTC--CGAACTCT 3149 Query 16885 CGTT-TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || |||| |||||||| ||||| |||| ||| || |||||||||||||| Sbjct 3148 CGACCTCCAAAGTGATGGTCTTTCCAGTCAACGTCTTAACAAAAATCTGCAT 3097 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||| ||||| || ||||||||||| || | |||| | ||||| Sbjct 2624 AGGACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCGAGGGTTCGGCCGTCC 2565 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || ||| | || || | ||| ||||| || | ||| || ||||| Sbjct 2564 TCGAGCTGTTTACCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 2505 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | |||||| | ||| |||| ||||||| Sbjct 2504 TGGATCTTGGC--CTTGACGTTATCGATGGTGTCGGAGCTCTCGACCTCCAAAGTGATGG 2447 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || ||||| || |||||||| Sbjct 2446 TTTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 2413 >seq284040 Length=2693 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| | | || ||| |||| ||||| |||||||||||| || |||||||| ||||| Sbjct 986 CCCTCCCCTCAACCGCAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGC 927 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | |||| || | || ||||| || | || | ||||| |||||| || Sbjct 926 CAAAGTCCTTCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGG 867 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | || || ||||| ||| | | |||||| | | | |||||| | ||| Sbjct 866 GATTCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCAC 807 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| ||||||||||||| ||| || || || |||||||| Sbjct 806 CTCCAACGTGATCGTTTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 759 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || |||| || |||| ||| || || || ||||| || ||||||||||| || Sbjct 530 CCCGCCGCGAAGCCGTAGCACCAGATGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGC 471 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | |||| || ||||||||| || || || || | || || ||||| || || ||| Sbjct 470 TAGGGTTCTGCCGTCCTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCGGGAGG 411 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | || || ||||| || | | ||| || | | | | || ||| | ||| Sbjct 410 AATTCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTATCGGAGCTCTCGAC 351 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| ||||| ||||| || |||||||| || |||||||| Sbjct 350 CTCCAGAGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 303 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || ||||||||||| || | |||| || ||||||||| || Sbjct 733 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCTGCCGTCCTCCAGCTGC 674 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || || | || || ||||| || ||| ||| | || || ||||| || | | Sbjct 673 TTCCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTC 614 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | || ||| | ||| |||| |||||||| || ||||| Sbjct 613 GCCTTGACGTTATCGATCGTATCGGAGCTCTCGACCTCCAGAGTGATGGTCTTGCCGGTT 554 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || |||||||| || |||||||| Sbjct 553 AGGGTTTTGACGAAGATCTGCAT 531 >seq25275 Length=8276 Score = 105 bits (116), Expect = 5e-18 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| ||||||||||| ||||||| || ||||| Sbjct 5230 AGAACCAAGTGAAGGGTGGACTCCTTCTGTATGTTGTAATCGGCCAAAGTGCGACCGTCC 5171 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| ||| | || | || ||| ||||| || | ||||| ||||| Sbjct 5170 TCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCT 5111 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-CGT-TTCCACGGTGATGG 16901 |||| | |||||| | | | |||||| || |||| || ||||| ||||||| Sbjct 5110 TGGATTTTCGCCTTCACGTTATCGATAGTGTC--CGAGCTCTCGACTTCCAACGTGATGG 5053 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || ||||||||||| || ||||| Sbjct 5052 TTTTCCCTGTTAGGGTTTTGACAAAGATTTGCAT 5019 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || || ||||| || ||||||||||| || | ||| | | ||| Sbjct 5458 AGCACCAAGTGAAGGGTTGATTCCTTCTGAATGTTGTAGTCTGCAAGGGTACGGCCATCC 5399 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| ||| | || | | |||||||| || | |||||||| || Sbjct 5398 TCAAGCTGCTTGCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATTCCCTCTTTATCT 5339 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| | |||||| | | | | |||||| | ||| ||||| |||||||| Sbjct 5338 TGGATTTTCGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAACTTCCAGTGTGATGGTC 5279 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||||| || || ||||| |||||||| Sbjct 5278 TTTCCGGTCAAAGTCTTCACAAAGATCTGCAT 5247 >seq277754 Length=2847 Score = 104 bits (114), Expect = 2e-17 Identities = 145/205 (71%), Gaps = 9/205 (4%) Strand=Plus/Minus Query 16729 CATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAA 16788 || ||| ||||| ||||||||||| |||||||||||||| | |||| | ||||||| | Sbjct 2784 CAGATGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCCTCGAG 2725 Query 16789 TTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAAT 16848 |||||| || || | || ||||| || |||||| || | ||| || |||||||| Sbjct 2724 TTGTTTTCCGGCGAAGATGAGCCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCGGC--- 2668 Query 16849 TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCC 16908 ||||| | | | |||||| || ||| |||| || ||||| || || Sbjct 2667 ------TTTCACGTTGTAGATGGTGTCGGAGGACTCAACCTCCAGCGTTATGGTCTTGCC 2614 Query 16909 GGTCAGCGTTTTGACAAAAATCTGC 16933 ||| || ||||| || || |||||| Sbjct 2613 GGTTAGGGTTTTCACGAAGATCTGC 2589 >seq259261 Length=7884 Score = 102 bits (112), Expect = 7e-17 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || |||||||||||||| | ||| || ||||| Sbjct 2587 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCCGTCC 2528 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || || | || || ||||| |||||| || | ||| || ||||| Sbjct 2527 TCGAGCTGTTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCC 2468 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | | |||||| || || |||| ||||| | Sbjct 2467 TGGATCTTGGC--CTTCACGTTGTCGATCGTGTCGGAGGATTCGACCTCCAACGTGATCG 2410 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || || || || ||||| || || ||||||||||| Sbjct 2409 TCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2373 >seq243249 Length=1014 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/205 (70%), Gaps = 9/205 (4%) Strand=Plus/Plus Query 16729 CATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAA 16788 ||||| | | ||||||||||||| ||| |||||||||| | |||| || ||||||| | Sbjct 746 CATATAGACCATGGACTCCTTTTGGATGCTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAG 805 Query 16789 TTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAAT 16848 ||||| || || | || ||||| || |||||| || | ||| || |||||||| Sbjct 806 CTGTTTTCCGGCGAAGATGAGCCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCGGC--- 862 Query 16849 TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCC 16908 ||||| | | | |||||| || ||| |||| || ||||| || || Sbjct 863 ------TTTCACGTTGTAGATGGTGTCGGAGGACTCAACCTCCAACGTTATGGTCTTGCC 916 Query 16909 GGTCAGCGTTTTGACAAAAATCTGC 16933 ||| || ||||| ||||| |||||| Sbjct 917 GGTTAGAGTTTTCACAAAGATCTGC 941 >seq62239 Length=9780 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||||||||| | ||| || ||||||| | || Sbjct 5355 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCTGCCGTCCTCGAGCTGC 5414 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || || || || |||||| || | ||| || ||||| || || Sbjct 5415 TTCCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCTTG 5474 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | |||||| || || || | ||| |||||||| |||| Sbjct 5475 GC--CTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCTAGGGTTATGGTTTTCCCGG 5532 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || ||||| || || |||||||| || Sbjct 5533 TTAGGGTTTTCACGAAGATCTGCATCTT 5560 >seq13062 Length=30343 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/202 (69%), Gaps = 9/202 (4%) Strand=Plus/Plus Query 16732 ATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTG 16791 ||| |||||||||||||| | |||||||||||||| | ||||||| ||||||| | | Sbjct 28576 ATGGAGCGTGGACTCCTTCTAGATGTTGTAGTCGGCTAGGGTTTTGCCGTCCTCGAGCTA 28635 Query 16792 TTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTG 16851 ||| | | | || || || || ||||||| || | ||| || |||||||| Sbjct 28636 TTTTTCGTCGAAGATGAGGCGTTGCTGGTCCAACGGGATGCCTTCCTTGTCGGC------ 28689 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 ||||| | | | |||||| || ||| |||| || ||||| || ||||| Sbjct 28690 ---TTTCACGTTGTAGATGGTGTCGGAGGACTCAACCTCCAATGTTATGGTCTTGCCGGT 28746 Query 16912 CAGCGTTTTGACAAAAATCTGC 16933 || ||||| || || |||||| Sbjct 28747 TAGGGTTTTTACGAAGATCTGC 28768 >seq141081 Length=4874 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || | ||||||||| || | |||| |||| Sbjct 2008 AGGACCAAATGGAGAGTGGACTCCTTCTGGACGTTGTAGTCAGCAAGGGTTCGACCGTCT 2067 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| |||||| | ||| ||||||| | ||| ||||| | ||| | || |||||||| Sbjct 2068 TCCAGTTGTTTTCTAGCAAAAATAAGTCTCTGCTGGTCTAGAGGGATGCATTCTTTGTCT 2127 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||||| | | | |||||||| | || || | ||||||| Sbjct 2128 TGGATCTTGGC--CTTCATGTTGTCAACAGTGTCTGAGCTTTCGACCTCTAAAGTGATGG 2185 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCT 16931 | ||| | |||| || || || |||| || Sbjct 2186 TCTTTTCAGTCAAAGTCTTCACCAAAACCT 2215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402797691438940