Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq52643 127 1e-24
seq228143 98.7 7e-16
seq25275 95.1 8e-15
seq156932 89.7 3e-13
seq284040 87.8 1e-12
seq121238 87.8 1e-12
seq297527 82.4 5e-11
seq279119 82.4 5e-11
>seq52643
Length=978
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||
Sbjct 811 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 870
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| |||||||||||||||||||| |||||||
Sbjct 871 TAATCCATTCATGCGCGTCACTAATTACATGACGA 905
>seq228143
Length=6931
Score = 98.7 bits (108), Expect = 7e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | ||| | ||||| ||||| || |||||| || || ||||| || |
Sbjct 2869 TACCACCACGAAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 2810
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| || |||| || | || |||||||| || || || | || || || | |
Sbjct 2809 CAAGGGTTCGGCCGTCTTCCAGCTGCTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGAG 2750
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| |||||||||||| || || ||| || || | | || || |||||||
Sbjct 2749 GGATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAA 2690
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||||||||| || || || || |||||||||||||| || ||||||||
Sbjct 2689 CTTCTAATGTGATGGTCTTTCCGGTCAAGGTTTTCACAAAAATCTGCAT 2641
>seq25275
Length=8276
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||||||||| || | |||||| ||||| || ||||| ||||| ||||| || |
Sbjct 5473 CCACCTCTCAATCGAAGCACCAAGTGAAGGGTTGATTCCTTCTGAATGTTGTAGTCTGCA 5414
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| ||| | || || | || || |||||||| || | | |||||| || | |||
Sbjct 5413 AGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGG 5354
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| || ||||| || ||||| |||||| || | || || || || ||||||
Sbjct 5353 ATTCCCTCTTTATCTTGGATTTTCGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAACT 5294
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | ||| || || || || ||||| || ||||| || ||||||||
Sbjct 5293 TCCAGTGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAGATCTGCAT 5247
Score = 84.2 bits (92), Expect = 1e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||| ||||| ||||| | ||||| ||||| || |||||| || || || || || |
Sbjct 5019 TACCGCCTCTTAAACGAAGAACCAAGTGAAGGGTTGACTCCTTCTGGATGTTATAGTCGG 4960
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | ||| |||| || | || ||||||||||| || || | || || || | ||
Sbjct 4959 CAAGAGTACGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGGG 4900
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | ||||| ||||| |||||| |||||| || | | || || ||||| |
Sbjct 4899 GAATACCTTCCTTGTCTTGAATTTTAGCCTTCACGTTGTCAATGGTGTCAGAGCTTTCGA 4840
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || | || || ||||| || || | |||||| || || || |||||
Sbjct 4839 CCTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 4791
>seq156932
Length=6713
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|| || ||||| | || ||| | ||| || || ||||| || || |||||||| |
Sbjct 3757 CCTCCCCTCAACCTCAGCACAAGATGCAGGGTCGATTCCTTCTGGATGTTGTAATCCGCA 3816
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | || | || || | |||||||||||||| || || | |||||| || | |||
Sbjct 3817 AGAGTCCGCCCATCTTCCAGCTGTTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGG 3876
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||||| ||||| ||| || ||||| || | || ||||| || || |||
Sbjct 3877 ATTCCTTCCTTGTCTTGAATCTTGGCTTTCACGTTGTCGATGGTATCCGAGCTCTCGACT 3936
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || || || || || || || | |||||| ||||| ||||||||
Sbjct 3937 TCCAAAGTGATCGTCTTCCCAGTGAGGGTTTTGACGAAAATCTGCAT 3983
>seq284040
Length=2693
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | | ||| | ||| | || || ||| |||||| || || |||||||| |
Sbjct 1214 ACCACCACGAAGACGAAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCCGC 1155
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
|| | || | || || | || |||||||||||||| | | || || || | ||
Sbjct 1154 CAGAGTCCGGCCATCTTCCAGCTGCTTTCCGGCAAATATCAACCTCTGCTGGTCCGGTGG 1095
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| || ||||| ||| ||| || ||| ||||| | || ||||| || || ||
Sbjct 1094 AATCCCCTCTTTATCCTGAATCTTGGCCTTGACATTATCGATCGTATCGGAGCTCTCCAC 1035
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | ||||| || || || ||||| || |||||||||||||||||
Sbjct 1034 CTCCAGAGTAATCGTCTTCCCGGTCAACGTCTTCACGAATATCTGCAT 987
>seq121238
Length=284
Score = 87.8 bits (96), Expect = 1e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| ||||| || ||||||| ||||||||| ||||||||||| |||||||||||| |
Sbjct 76 CTCTCTTTTCAATGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCAC 17
Query 20007 GGTAATATTTAGCCTT 20022
| |||||||||||
Sbjct 16 GCCGGTATTTAGCCTT 1
>seq297527
Length=11500
Score = 82.4 bits (90), Expect = 5e-11
Identities = 199/296 (67%), Gaps = 4/296 (1%)
Strand=Plus/Minus
Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254
|| || ||||| | ||||||||||| || | ||| ||||||| |||||
Sbjct 7678 GATGCCTTCTATAGGTACAAAATGCCCAAAATGATAACGAAGATCGAGGGCCGTGGAAAT 7619
Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314
|| || || || || ||||||||| ||| || || ||||| | | | | || ||
Sbjct 7618 GGCATCAAGACGAATATCGTCAACATGATTGATGTTGCCAAGGCTTTGGCAAGACCCGCT 7559
Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374
| ||| | || |||||||| || || || || || || || | |||||||| | |||
Sbjct 7558 TCTTACACAACCAAATATTTTGGATGTGAGCTCGGAGCCCAATCCAAGTTTGATGA-AAA 7500
Query 6375 AACGAGCGCTTCA-TCGTTAACGGATCGCATAACTCTGCCAAGCT-GCAGGACTTACTTG 6432
|| |||| || | |||||||| | || || |||| || || || |||||| || |
Sbjct 7499 GACTAGCGTGTCCCTTGTTAACGGGGCCCACGACACTGCAAAACTTGCTGGACTT-CTGG 7441
Query 6433 ACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAG 6488
| ||| ||| || | ||| | |||| | || | ||||||||||||||||
Sbjct 7440 AGAACTTCATTAAGAAATATGTTCAGTGTTATGGTTGTGGTAACCCGGAGACCGAG 7385
>seq279119
Length=662
Score = 82.4 bits (90), Expect = 5e-11
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC 20004
|||||| |||||||| ||||||| ||||||||| ||||||||||| ||||||||||||
Sbjct 659 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTC 602
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 333053457307886
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |