Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq52643 127 1e-24 seq228143 98.7 7e-16 seq25275 95.1 8e-15 seq156932 89.7 3e-13 seq284040 87.8 1e-12 seq121238 87.8 1e-12 seq297527 82.4 5e-11 seq279119 82.4 5e-11 >seq52643 Length=978 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 811 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 870 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||| ||||||| Sbjct 871 TAATCCATTCATGCGCGTCACTAATTACATGACGA 905 >seq228143 Length=6931 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| ||||| || |||||| || || ||||| || | Sbjct 2869 TACCACCACGAAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 2810 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || |||| || | || |||||||| || || || | || || || | | Sbjct 2809 CAAGGGTTCGGCCGTCTTCCAGCTGCTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGAG 2750 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||||||| || || ||| || || | | || || ||||||| Sbjct 2749 GGATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAA 2690 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||||| || || || || |||||||||||||| || |||||||| Sbjct 2689 CTTCTAATGTGATGGTCTTTCCGGTCAAGGTTTTCACAAAAATCTGCAT 2641 >seq25275 Length=8276 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||||||| || | |||||| ||||| || ||||| ||||| ||||| || | Sbjct 5473 CCACCTCTCAATCGAAGCACCAAGTGAAGGGTTGATTCCTTCTGAATGTTGTAGTCTGCA 5414 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | || || |||||||| || | | |||||| || | ||| Sbjct 5413 AGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCTTTGTTGGTCTGGTGGG 5354 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || ||||| || ||||| |||||| || | || || || || |||||| Sbjct 5353 ATTCCCTCTTTATCTTGGATTTTCGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAACT 5294 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||| || || || || ||||| || ||||| || |||||||| Sbjct 5293 TCCAGTGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAGATCTGCAT 5247 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||| ||||| | ||||| ||||| || |||||| || || || || || | Sbjct 5019 TACCGCCTCTTAAACGAAGAACCAAGTGAAGGGTTGACTCCTTCTGGATGTTATAGTCGG 4960 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| |||| || | || ||||||||||| || || | || || || | || Sbjct 4959 CAAGAGTACGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGGG 4900 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| |||||| |||||| || | | || || ||||| | Sbjct 4899 GAATACCTTCCTTGTCTTGAATTTTAGCCTTCACGTTGTCAATGGTGTCAGAGCTTTCGA 4840 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || ||||| || || | |||||| || || || ||||| Sbjct 4839 CCTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 4791 >seq156932 Length=6713 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || ||||| | || ||| | ||| || || ||||| || || |||||||| | Sbjct 3757 CCTCCCCTCAACCTCAGCACAAGATGCAGGGTCGATTCCTTCTGGATGTTGTAATCCGCA 3816 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | |||||||||||||| || || | |||||| || | ||| Sbjct 3817 AGAGTCCGCCCATCTTCCAGCTGTTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGG 3876 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| ||||| ||| || ||||| || | || ||||| || || ||| Sbjct 3877 ATTCCTTCCTTGTCTTGAATCTTGGCTTTCACGTTGTCGATGGTATCCGAGCTCTCGACT 3936 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || || || | |||||| ||||| |||||||| Sbjct 3937 TCCAAAGTGATCGTCTTCCCAGTGAGGGTTTTGACGAAAATCTGCAT 3983 >seq284040 Length=2693 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | ||| | || || ||| |||||| || || |||||||| | Sbjct 1214 ACCACCACGAAGACGAAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCCGC 1155 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | || | || || | || |||||||||||||| | | || || || | || Sbjct 1154 CAGAGTCCGGCCATCTTCCAGCTGCTTTCCGGCAAATATCAACCTCTGCTGGTCCGGTGG 1095 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | || ||||| ||| ||| || ||| ||||| | || ||||| || || || Sbjct 1094 AATCCCCTCTTTATCCTGAATCTTGGCCTTGACATTATCGATCGTATCGGAGCTCTCCAC 1035 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||||| || || || ||||| || ||||||||||||||||| Sbjct 1034 CTCCAGAGTAATCGTCTTCCCGGTCAACGTCTTCACGAATATCTGCAT 987 >seq121238 Length=284 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||||| || ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 76 CTCTCTTTTCAATGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCAC 17 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 16 GCCGGTATTTAGCCTT 1 >seq297527 Length=11500 Score = 82.4 bits (90), Expect = 5e-11 Identities = 199/296 (67%), Gaps = 4/296 (1%) Strand=Plus/Minus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 || || ||||| | ||||||||||| || | ||| ||||||| ||||| Sbjct 7678 GATGCCTTCTATAGGTACAAAATGCCCAAAATGATAACGAAGATCGAGGGCCGTGGAAAT 7619 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314 || || || || || ||||||||| ||| || || ||||| | | | | || || Sbjct 7618 GGCATCAAGACGAATATCGTCAACATGATTGATGTTGCCAAGGCTTTGGCAAGACCCGCT 7559 Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374 | ||| | || |||||||| || || || || || || || | |||||||| | ||| Sbjct 7558 TCTTACACAACCAAATATTTTGGATGTGAGCTCGGAGCCCAATCCAAGTTTGATGA-AAA 7500 Query 6375 AACGAGCGCTTCA-TCGTTAACGGATCGCATAACTCTGCCAAGCT-GCAGGACTTACTTG 6432 || |||| || | |||||||| | || || |||| || || || |||||| || | Sbjct 7499 GACTAGCGTGTCCCTTGTTAACGGGGCCCACGACACTGCAAAACTTGCTGGACTT-CTGG 7441 Query 6433 ACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAG 6488 | ||| ||| || | ||| | |||| | || | |||||||||||||||| Sbjct 7440 AGAACTTCATTAAGAAATATGTTCAGTGTTATGGTTGTGGTAACCCGGAGACCGAG 7385 >seq279119 Length=662 Score = 82.4 bits (90), Expect = 5e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC 20004 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| Sbjct 659 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTC 602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333053457307886