Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq294625 113 6e-20 seq161111 107 2e-18 seq180108 105 8e-18 seq293582 100 4e-16 >seq294625 Length=4757 Score = 113 bits (124), Expect = 6e-20 Identities = 400/614 (65%), Gaps = 12/614 (2%) Strand=Plus/Plus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 ||| || |||||||||||||||| || ||||||| ||| || |||||||| || || Sbjct 4077 CAAGCAGGCGAAATCGCAGTGTAATCCTTCGTCTCGTGAAATCAACTCGTTGGAGAAGGT 4136 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 32775 | ||| ||||| | || || || || | ||| || || | |||| || ||| || | Sbjct 4137 CAATCCAGGCATCAAACCGCGTTTCTTCAACCAGAAGATAG-CGCAGAAGCTTCCCGAGA 4195 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGCTGTC 32833 |||| || ||||| || || |||||||| | | || || ||| | || | | Sbjct 4196 AGAATATCCCTTCGACGCAAGCGAAGGCAATGATACGTTCCGCA-AACGACTCCG-AGCC 4253 Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 || |||||| | ||||||| ||||||||| | || ||||| || ||||| | ||| Sbjct 4254 ATCGATCCACCTCATCGCCCAATTGGCCTTCTTCTGGACGCAAGGAATGGTCTCCACAGC 4313 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 ||| || | || || || || || | || || || | | | || || Sbjct 4314 GCGAAACAGCCTCATCTTGTCGTTGGAGTCCTTGATGTAGGTCTCGAGGAGCAAGCTGTA 4373 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCGG 33012 ||| || || |||||||| || || || || || ||||||||| ||||| | |||||||| Sbjct 4374 CATCTCGGAGTGAATGTTCTCGATTGCGATCTGGAATCCGTAGAAAGCA-CGAGCCTCGG 4432 Query 33013 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 33072 | || || ||| | || | | | |||| ||||| || |||||||| || Sbjct 4433 CGACTTGAACCTCTTTCATGAACCTTCCGGCTAGGTTTTCCAATACGATTCCGTCGGAGG 4492 Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 33132 | || || || || | || || | || || | | |||| | || || | || Sbjct 4493 CGGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGTCGTTCGCCGTCGGTGAGGGAGTCCC 4552 Query 33133 AAT--CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190 | | | ||| || | || | ||| || || || | ||||| || || || || || Sbjct 4553 AGTGGCGTTG--GTCCTGTGACAAATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCGGC 4610 Query 33191 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 33250 ||| || ||||| | ||| || | | | || |||| || || ||| ||||||| || Sbjct 4611 CTTCTTGTACATTTCCCAAATCTGAGGGTAGCGAATAGGGAACATACAGAATCTATCGGG 4670 Query 33251 ATTTTTTGCAAGGA 33264 || ||||||| Sbjct 4671 GTTAGGAGCAAGGA 4684 >seq161111 Length=12134 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| || || | || | ||| || | ||| | || | ||||||||||||||| ||| Sbjct 5271 CCTCCTTGGTCAACATAACGAGCTGTATCATTGAAGACACGCAACATTGGAATAATGCCA 5212 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 |||||||| ||||| || || || || |||||| | | ||| |||||| || || Sbjct 5211 TTGGATGTGCCATTTGTTCCACGTATGTAACTTCCAGTTGAACGGATATTATGAACAGAG 5152 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| ||||| ||| ||| | || ||| || || || ||||| ||| Sbjct 5151 ACACCAATTCCTCCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTGTCATATATG 5092 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 || || || |||||||| ||||| | ||||| |||||| Sbjct 5091 CCTTCAATGCTATCATCTTTCATGCATATCAGAAAGCAGCTA 5050 >seq180108 Length=14591 Score = 105 bits (116), Expect = 8e-18 Identities = 157/222 (71%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| || || | || | || || | ||| | || | ||||||||||||||| ||| Sbjct 8328 CCTCCTTGGTCAACATAACGGGCAGTATCATTGAAGACACGCAACATTGGAATAATGCCA 8387 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 |||||||||||||| || || || || |||||| | |||||||||||| || || Sbjct 8388 TTGGATGTACCATTTGTTCCACGTATGTAACTTCCAGTTGCACGAATATTATGAACAGAG 8447 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||| ||||| ||| ||| | || ||| || || || ||||| ||| Sbjct 8448 ACACCAATTCCTCCTGC---TTTGCTGATAACAGCACATTCCTTGAAAGTGTCATATATG 8504 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 || || || |||||| | ||||| | || || |||||| Sbjct 8505 CCTTCAATGCTATCACCTTTCATGCATATCAGGAAGCAGCTA 8546 >seq293582 Length=2029 Score = 100 bits (110), Expect = 4e-16 Identities = 400/621 (64%), Gaps = 8/621 (1%) Strand=Plus/Plus Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714 ||||| || |||||||||||||| || || ||||| || || ||||||||||| ||| Sbjct 1291 ATCAAGCACGCGAAATCGCAGTGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAAC 1350 Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGA 32773 || || || ||||| ||||| ||||| || ||||| || |||| |||| || ||| || Sbjct 1351 GTTAGGCCCGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGCTTCCGGA 1409 Query 32774 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC 32833 ||||| || || || || || ||||| | | || | |||| | | | | | | Sbjct 1410 GAAGAAGATGCCCTCGACACAGGCGAAGGCGACGA-TC-CGCTCCGCGAAGGACTCGGAC 1467 Query 32834 ATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891 || ||||| | ||||| | ||||||| | | || || || ||||| | Sbjct 1468 CCGTCGATCCAGCGGAGGGCCCACTGGGCCTTCCGCTGGATGCAGGGGATGGTCTCCACG 1527 Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951 || | || || ||| || || || || || | || | || | | || || Sbjct 1528 GCGTGGAACAGCCGGTTCTTCTCGTTGGAGTCCTTGATGTAGGACTCCAGGAGGAGGCTG 1587 Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCG 33011 ||||| ||||| || ||||| || ||||| || || || ||||||||| | ||||| Sbjct 1588 TACATCTCCGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCC 1647 Query 33012 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 33071 | | ||| || || | || ||| | || | ||| || || || ||||| | Sbjct 1648 GCGACCTGGACCTCCTTCATGAAGCGTCCGGCAAGATTCTCCAGGACGATGCCGTCCGAG 1707 Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33131 || ||||| || || | || || | || || | ||| | | | | | || Sbjct 1708 GCGGCAAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCG-CCGTCGGTCAACGACTC 1766 Query 33132 CAATCATTGAT-ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190 | || | | || | |||| || |||||||| | |||||||| || || || || Sbjct 1767 CCATTGGCGCTGGTCCTGCGATAGGTCGACTTCTTCAGCCGTCCAAAACGAGGCTTCGGC 1826 Query 33191 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 33250 ||||| ||||| | |||||| | | |||| ||||| || || |||| || || Sbjct 1827 TTTTTTGTACATTTCCCAGATTTGGGGGTATTTGATTGGGAACATGCAGAATCGATCGGG 1886 Query 33251 ATTTTTTGCAAGGATTGGTTC 33271 |||| || |||| ||||| Sbjct 1887 ATTTGGGGCGAGGAGGGGTTC 1907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629957678917600