Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq294625 113 6e-20
seq161111 107 2e-18
seq180108 105 8e-18
seq293582 100 4e-16
>seq294625
Length=4757
Score = 113 bits (124), Expect = 6e-20
Identities = 400/614 (65%), Gaps = 12/614 (2%)
Strand=Plus/Plus
Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716
||| || |||||||||||||||| || ||||||| ||| || |||||||| || ||
Sbjct 4077 CAAGCAGGCGAAATCGCAGTGTAATCCTTCGTCTCGTGAAATCAACTCGTTGGAGAAGGT 4136
Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 32775
| ||| ||||| | || || || || | ||| || || | |||| || ||| || |
Sbjct 4137 CAATCCAGGCATCAAACCGCGTTTCTTCAACCAGAAGATAG-CGCAGAAGCTTCCCGAGA 4195
Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGCTGTC 32833
|||| || ||||| || || |||||||| | | || || ||| | || | |
Sbjct 4196 AGAATATCCCTTCGACGCAAGCGAAGGCAATGATACGTTCCGCA-AACGACTCCG-AGCC 4253
Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893
|| |||||| | ||||||| ||||||||| | || ||||| || ||||| | |||
Sbjct 4254 ATCGATCCACCTCATCGCCCAATTGGCCTTCTTCTGGACGCAAGGAATGGTCTCCACAGC 4313
Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953
||| || | || || || || || | || || || | | | || ||
Sbjct 4314 GCGAAACAGCCTCATCTTGTCGTTGGAGTCCTTGATGTAGGTCTCGAGGAGCAAGCTGTA 4373
Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCGG 33012
||| || || |||||||| || || || || || ||||||||| ||||| | ||||||||
Sbjct 4374 CATCTCGGAGTGAATGTTCTCGATTGCGATCTGGAATCCGTAGAAAGCA-CGAGCCTCGG 4432
Query 33013 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 33072
| || || ||| | || | | | |||| ||||| || |||||||| ||
Sbjct 4433 CGACTTGAACCTCTTTCATGAACCTTCCGGCTAGGTTTTCCAATACGATTCCGTCGGAGG 4492
Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 33132
| || || || || | || || | || || | | |||| | || || | ||
Sbjct 4493 CGGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGTCGTTCGCCGTCGGTGAGGGAGTCCC 4552
Query 33133 AAT--CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190
| | | ||| || | || | ||| || || || | ||||| || || || || ||
Sbjct 4553 AGTGGCGTTG--GTCCTGTGACAAATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCGGC 4610
Query 33191 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 33250
||| || ||||| | ||| || | | | || |||| || || ||| ||||||| ||
Sbjct 4611 CTTCTTGTACATTTCCCAAATCTGAGGGTAGCGAATAGGGAACATACAGAATCTATCGGG 4670
Query 33251 ATTTTTTGCAAGGA 33264
|| |||||||
Sbjct 4671 GTTAGGAGCAAGGA 4684
>seq161111
Length=12134
Score = 107 bits (118), Expect = 2e-18
Identities = 157/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286
||||| || || | || | ||| || | ||| | || | ||||||||||||||| |||
Sbjct 5271 CCTCCTTGGTCAACATAACGAGCTGTATCATTGAAGACACGCAACATTGGAATAATGCCA 5212
Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346
|||||||| ||||| || || || || |||||| | | ||| |||||| || ||
Sbjct 5211 TTGGATGTGCCATTTGTTCCACGTATGTAACTTCCAGTTGAACGGATATTATGAACAGAG 5152
Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406
| ||| ||||| ||||| ||| ||| | || ||| || || || ||||| |||
Sbjct 5151 ACACCAATTCCTCCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTGTCATATATG 5092
Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448
|| || || |||||||| ||||| | ||||| ||||||
Sbjct 5091 CCTTCAATGCTATCATCTTTCATGCATATCAGAAAGCAGCTA 5050
>seq180108
Length=14591
Score = 105 bits (116), Expect = 8e-18
Identities = 157/222 (71%), Gaps = 3/222 (1%)
Strand=Plus/Plus
Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286
||||| || || | || | || || | ||| | || | ||||||||||||||| |||
Sbjct 8328 CCTCCTTGGTCAACATAACGGGCAGTATCATTGAAGACACGCAACATTGGAATAATGCCA 8387
Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346
|||||||||||||| || || || || |||||| | |||||||||||| || ||
Sbjct 8388 TTGGATGTACCATTTGTTCCACGTATGTAACTTCCAGTTGCACGAATATTATGAACAGAG 8447
Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406
| ||| ||||| ||||| ||| ||| | || ||| || || || ||||| |||
Sbjct 8448 ACACCAATTCCTCCTGC---TTTGCTGATAACAGCACATTCCTTGAAAGTGTCATATATG 8504
Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448
|| || || |||||| | ||||| | || || ||||||
Sbjct 8505 CCTTCAATGCTATCACCTTTCATGCATATCAGGAAGCAGCTA 8546
>seq293582
Length=2029
Score = 100 bits (110), Expect = 4e-16
Identities = 400/621 (64%), Gaps = 8/621 (1%)
Strand=Plus/Plus
Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714
||||| || |||||||||||||| || || ||||| || || ||||||||||| |||
Sbjct 1291 ATCAAGCACGCGAAATCGCAGTGCAGGCCTTCGTCCCTCGAGATCAATTCGTTGGAGAAC 1350
Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGA 32773
|| || || ||||| ||||| ||||| || ||||| || |||| |||| || ||| ||
Sbjct 1351 GTTAGGCCCGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGCTTCCGGA 1409
Query 32774 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC 32833
||||| || || || || || ||||| | | || | |||| | | | | | |
Sbjct 1410 GAAGAAGATGCCCTCGACACAGGCGAAGGCGACGA-TC-CGCTCCGCGAAGGACTCGGAC 1467
Query 32834 ATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891
|| ||||| | ||||| | ||||||| | | || || || ||||| |
Sbjct 1468 CCGTCGATCCAGCGGAGGGCCCACTGGGCCTTCCGCTGGATGCAGGGGATGGTCTCCACG 1527
Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951
|| | || || ||| || || || || || | || | || | | || ||
Sbjct 1528 GCGTGGAACAGCCGGTTCTTCTCGTTGGAGTCCTTGATGTAGGACTCCAGGAGGAGGCTG 1587
Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCG 33011
||||| ||||| || ||||| || ||||| || || || ||||||||| | |||||
Sbjct 1588 TACATCTCCGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCC 1647
Query 33012 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 33071
| | ||| || || | || ||| | || | ||| || || || ||||| |
Sbjct 1648 GCGACCTGGACCTCCTTCATGAAGCGTCCGGCAAGATTCTCCAGGACGATGCCGTCCGAG 1707
Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33131
|| ||||| || || | || || | || || | ||| | | | | | ||
Sbjct 1708 GCGGCAAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCG-CCGTCGGTCAACGACTC 1766
Query 33132 CAATCATTGAT-ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190
| || | | || | |||| || |||||||| | |||||||| || || || ||
Sbjct 1767 CCATTGGCGCTGGTCCTGCGATAGGTCGACTTCTTCAGCCGTCCAAAACGAGGCTTCGGC 1826
Query 33191 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 33250
||||| ||||| | |||||| | | |||| ||||| || || |||| || ||
Sbjct 1827 TTTTTTGTACATTTCCCAGATTTGGGGGTATTTGATTGGGAACATGCAGAATCGATCGGG 1886
Query 33251 ATTTTTTGCAAGGATTGGTTC 33271
|||| || |||| |||||
Sbjct 1887 ATTTGGGGCGAGGAGGGGTTC 1907
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629957678917600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |