Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq25275 134 1e-26 seq284040 109 5e-19 seq156932 100 2e-16 seq276382 95.1 1e-14 seq228143 89.7 4e-13 >seq25275 Length=8276 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || || ||| ||||||| | ||||| ||| || Sbjct 5019 ATGCAAATCTTTGTCAAAACCCTAACAGGGAAAACCATCACGTTGGAAGTCGAGAGCTCG 5078 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | || ||||| |||||| ||||| || || ||||| || ||||| Sbjct 5079 GACACTATCGA-TAACGTGAAGGCGAAAATCCAAGACAAGGAGGGTATTCCCCCAGACCA 5137 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||||||||| || | || || | ||||||| ||| ||||||||| Sbjct 5138 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACTTTGGCCGATTACAA 5197 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || || || || | ||||||| || Sbjct 5198 CATACAGAAGGAGTCCACCCTTCACTTGGTTCTTCGTTTAAGAGGCGG 5245 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||||||||||| || |||||||| | ||||| ||| || Sbjct 5247 ATGCAGATCTTTGTGAAGACTTTGACCGGAAAGACCATCACACTGGAAGTTGAGAGCTCC 5306 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| |||||| || ||||| || || ||||| |||||| Sbjct 5307 GACACCATCGACAACGTGAAGGCGAAAATCCAAGATAAAGAGGGAATCCCACCAGACCAA 5366 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || ||||||||||| || | || |||| || || | | || ||||| Sbjct 5367 CAAAGATTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTTGCAGACTACAAC 5426 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || ||||| || || || || ||||| Sbjct 5427 ATTCAGAAGGAATCAACCCTTCACTTGGTGCT 5458 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || ||| || Sbjct 4563 ATGCAGATCTTCGTTAAGACACTAACTGGAAAGACCATCACCCTAGAGGTCGAGAGTTCC 4622 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| | ||| |||||| ||||| ||||||||||| || || || Sbjct 4623 GATACAATCGACAACGTCAAGGCCAAAATCCAGGACAAGGAAGGGATTCCCCCAGATCAG 4682 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||||||||| || | || || | || ||| ||| ||| |||||| Sbjct 4683 CAAAGGCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGAACTTTGGCCGACTACAAT 4742 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | || ||| | || | ||||| Sbjct 4743 ATCCAGAAGGAGTCCACACTCCACCTCGTCCTACGTCTCCGTGGAGG 4789 >seq284040 Length=2693 Score = 109 bits (120), Expect = 5e-19 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| || ||||| |||||||| || | || || | || |||||| || Sbjct 987 ATGCAGATATTCGTGAAGACGTTGACCGGGAAGACGATTACTCTGGAGGTGGAGAGCTCC 1046 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||| |||| | || || | ||| || ||||| ||||||||||| || Sbjct 1047 GATACGATCGATAATGTCA---AGGCCAAGATTCAG-GATAAAGAGGGGATTCCACCGGA 1102 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || |||||||| || || | ||||||| || ||| ||| ||||| Sbjct 1103 CCAGCAGAGGTTGATATTTGCCGGAAAGCAGCTGGAAGATGGCCGGACTCTGGCGGATTA 1162 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || ||||| || || | ||||| Sbjct 1163 CAACATCCAGAAGGAGTCCACCCTGCACCTTGTGCT 1198 >seq156932 Length=6713 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||| ||||| || | ||||| | || |||||| || Sbjct 3755 ATGCAGATTTTCGTCAAGACTTTAACCGGGAAGACGATCACCTTGGAGGTGGAGAGCTCG 3696 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| |||| | ||| || || |||||||||||||| ||||| Sbjct 3695 GATACCATTGACAATGTGAAGGCAAAGATTCAG-GATAAGGAAGGGATTCCACCAGACCA 3637 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || || || || || || |||| ||| ||| | | |||||||| Sbjct 3636 GCAGAGGTTGATATTCGCAGGGAAGCAGTTGGAGGATGGTCGTACTCTTGCGGATTACAA 3577 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||| || || || || || || || Sbjct 3576 TATCCAGAAGGAGTCGACTCTTCA 3553 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| ||||| ||||| || ||||| | || || || ||||||| |||| || ||| Sbjct 4444 AACAGATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAGA 4385 Query 25054 CGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || || || || || | ||| || ||| ||||| ||||||||||| || | Sbjct 4384 GTTCCGATACAATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCTCCAG 4325 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || ||| || | || |||||||| ||||| | || || | || ||| | | ||| | Sbjct 4324 ATCAGCAGAGGCTGATCTTTGCCGGTAAACAGCTCGAGGACGGCCGAACTCTAGCCGACT 4265 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || ||||| || ||||| || || || || || Sbjct 4264 ACAACATCCAAAAGGAGTCCACCCTCCACTTGGTCCT 4228 >seq276382 Length=2823 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || ||||||| | || || ||| || Sbjct 1921 ATGCAGATTTTTGTTAAGACTTTGACTGGAAAGACCATCACTTTGGAGGTTGAGAGTTCG 1980 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| | || ||||| | ||| || || ||||| || ||||| ||| | Sbjct 1981 GACACCGTTGACAACGTGAAGGCTATGATCCAGGATAAGGAAGGCATCCCACCGGACTAG 2040 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || |||| ||| || ||||| ||||||| || || ||| |||||||| Sbjct 2041 AAGAGGTTGATCTTTGTCGGGAAGCAATTGGAAGATGGCCGTACGTTGGCTGATTACAAC 2100 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || | || ||| | ||||| |||||| ||||| Sbjct 2101 ATCCAGAAGGAGTCGGCCCTTCATCTTGTGCTTTAGCTAAGGGGAGG 2147 >seq228143 Length=6931 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || |||||||| || |||||||| | ||||| || || Sbjct 2641 ATGCAGATTTTTGTGAAAACCTTGACCGGAAAGACCATCACATTAGAAGTTGAAAGCTCC 2700 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||||||||| || || || ||||| Sbjct 2701 GACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCAG 2760 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | ||||||| ||||| || || | ||||| | || || | | ||| ||||| Sbjct 2761 CAGAGACTTATTTTCGCCGGAAAGCAGCTGGAAGACGGCCGAACCCTTGCCGACTACAAC 2820 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 2821 ATCCAGAAGGAGTCGACCCTTCACTTGGTCCT 2852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430878026591390