Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq25275 134 1e-26
seq284040 109 5e-19
seq156932 100 2e-16
seq276382 95.1 1e-14
seq228143 89.7 4e-13
>seq25275
Length=8276
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| || || | || || ||| ||||||| | ||||| ||| ||
Sbjct 5019 ATGCAAATCTTTGTCAAAACCCTAACAGGGAAAACCATCACGTTGGAAGTCGAGAGCTCG 5078
Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||||||||| | || ||||| |||||| ||||| || || ||||| || |||||
Sbjct 5079 GACACTATCGA-TAACGTGAAGGCGAAAATCCAAGACAAGGAGGGTATTCCCCCAGACCA 5137
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | || ||||||||||| || | || || | ||||||| ||| |||||||||
Sbjct 5138 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACTTTGGCCGATTACAA 5197
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || || ||||| || || || || || | ||||||| ||
Sbjct 5198 CATACAGAAGGAGTCCACCCTTCACTTGGTTCTTCGTTTAAGAGGCGG 5245
Score = 122 bits (134), Expect = 7e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||||||||||| || |||||||| | ||||| ||| ||
Sbjct 5247 ATGCAGATCTTTGTGAAGACTTTGACCGGAAAGACCATCACACTGGAAGTTGAGAGCTCC 5306
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| ||||| |||||| || ||||| || || ||||| ||||||
Sbjct 5307 GACACCATCGACAACGTGAAGGCGAAAATCCAAGATAAAGAGGGAATCCCACCAGACCAA 5366
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| | | || ||||||||||| || | || |||| || || | | || |||||
Sbjct 5367 CAAAGATTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTTGCAGACTACAAC 5426
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || ||||| || || || || |||||
Sbjct 5427 ATTCAGAAGGAATCAACCCTTCACTTGGTGCT 5458
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || ||||||| | || || ||| ||
Sbjct 4563 ATGCAGATCTTCGTTAAGACACTAACTGGAAAGACCATCACCCTAGAGGTCGAGAGTTCC 4622
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| || ||||| | ||| |||||| ||||| ||||||||||| || || ||
Sbjct 4623 GATACAATCGACAACGTCAAGGCCAAAATCCAGGACAAGGAAGGGATTCCCCCAGATCAG 4682
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| || | || ||||||||||| || | || || | || ||| ||| ||| ||||||
Sbjct 4683 CAAAGGCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGAACTTTGGCCGACTACAAT 4742
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || || ||||| || || | || ||| | || | |||||
Sbjct 4743 ATCCAGAAGGAGTCCACACTCCACCTCGTCCTACGTCTCCGTGGAGG 4789
>seq284040
Length=2693
Score = 109 bits (120), Expect = 5e-19
Identities = 155/216 (72%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| ||||| || ||||| |||||||| || | || || | || |||||| ||
Sbjct 987 ATGCAGATATTCGTGAAGACGTTGACCGGGAAGACGATTACTCTGGAGGTGGAGAGCTCC 1046
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || ||||| |||| | || || | ||| || ||||| ||||||||||| ||
Sbjct 1047 GATACGATCGATAATGTCA---AGGCCAAGATTCAG-GATAAAGAGGGGATTCCACCGGA 1102
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| ||| || | || |||||||| || || | ||||||| || ||| ||| |||||
Sbjct 1103 CCAGCAGAGGTTGATATTTGCCGGAAAGCAGCTGGAAGATGGCCGGACTCTGGCGGATTA 1162
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||| || || || || ||||| || || | |||||
Sbjct 1163 CAACATCCAGAAGGAGTCCACCCTGCACCTTGTGCT 1198
>seq156932
Length=6713
Score = 100 bits (110), Expect = 2e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||||| ||||| || | ||||| | || |||||| ||
Sbjct 3755 ATGCAGATTTTCGTCAAGACTTTAACCGGGAAGACGATCACCTTGGAGGTGGAGAGCTCG 3696
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || || ||||| |||| | ||| || || |||||||||||||| |||||
Sbjct 3695 GATACCATTGACAATGTGAAGGCAAAGATTCAG-GATAAGGAAGGGATTCCACCAGACCA 3637
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | || || || || || || || || |||| ||| ||| | | ||||||||
Sbjct 3636 GCAGAGGTTGATATTCGCAGGGAAGCAGTTGGAGGATGGTCGTACTCTTGCGGATTACAA 3577
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
||| || || || || || || ||
Sbjct 3576 TATCCAGAAGGAGTCGACTCTTCA 3553
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/217 (70%), Gaps = 1/217 (0%)
Strand=Plus/Minus
Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053
|||| ||||| ||||| || ||||| | || || || ||||||| |||| || |||
Sbjct 4444 AACAGATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAGA 4385
Query 25054 CGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
|| || || || || | ||| || ||| ||||| ||||||||||| || |
Sbjct 4384 GTTCCGATACAATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCTCCAG 4325
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173
| || ||| || | || |||||||| ||||| | || || | || ||| | | ||| |
Sbjct 4324 ATCAGCAGAGGCTGATCTTTGCCGGTAAACAGCTCGAGGACGGCCGAACTCTAGCCGACT 4265
Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||| || ||||| || ||||| || || || || ||
Sbjct 4264 ACAACATCCAAAAGGAGTCCACCCTCCACTTGGTCCT 4228
>seq276382
Length=2823
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||||||||| || || ||||||| | || || ||| ||
Sbjct 1921 ATGCAGATTTTTGTTAAGACTTTGACTGGAAAGACCATCACTTTGGAGGTTGAGAGTTCG 1980
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| | || ||||| | ||| || || ||||| || ||||| ||| |
Sbjct 1981 GACACCGTTGACAACGTGAAGGCTATGATCCAGGATAAGGAAGGCATCCCACCGGACTAG 2040
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| || | || |||| ||| || ||||| ||||||| || || ||| ||||||||
Sbjct 2041 AAGAGGTTGATCTTTGTCGGGAAGCAATTGGAAGATGGCCGTACGTTGGCTGATTACAAC 2100
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || || || | || ||| | ||||| |||||| |||||
Sbjct 2101 ATCCAGAAGGAGTCGGCCCTTCATCTTGTGCTTTAGCTAAGGGGAGG 2147
>seq228143
Length=6931
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || |||||||| || |||||||| | ||||| || ||
Sbjct 2641 ATGCAGATTTTTGTGAAAACCTTGACCGGAAAGACCATCACATTAGAAGTTGAAAGCTCC 2700
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || | ||| || ||| ||||||||||| || || || |||||
Sbjct 2701 GACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCAG 2760
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| | ||||||| ||||| || || | ||||| | || || | | ||| |||||
Sbjct 2761 CAGAGACTTATTTTCGCCGGAAAGCAGCTGGAAGACGGCCGAACCCTTGCCGACTACAAC 2820
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || || || || || || ||
Sbjct 2821 ATCCAGAAGGAGTCGACCCTTCACTTGGTCCT 2852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430878026591390
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |