Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq294625 159 4e-34 seq266830 91.5 2e-13 seq274877 84.2 2e-11 seq239267 84.2 2e-11 seq153427 84.2 2e-11 seq61581 84.2 2e-11 >seq294625 Length=4757 Score = 159 bits (176), Expect = 4e-34 Identities = 554/851 (65%), Gaps = 15/851 (2%) Strand=Plus/Plus Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||| || || || |||||| |||| || |||||||| ||||| |||| || || ||| Sbjct 3789 TTTCTGATACTCTCCAACTCTTTTCTCGAAGAAATTCGTCTTCCCTTGTAACGAAATCAG 3848 Query 92862 ATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAA 92919 | || | | || |||||||| ||||| || | || ||| ||| ||| Sbjct 3849 CTCCATCCAATCGAATGGATTCTGTGCGTTGTACAATTTCCCACATCCCAATGACACCAA 3908 Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979 | || ||||| || || || ||||||| | ||| | |||| |||||| || | || Sbjct 3909 AAGCCTGTCAGCAACGAACTCGATGTACTTACTCATGAGGTCACCATTCATCCCCACGAG 3968 Query 92980 A-CGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGA 93038 | || || |||| |||||| | ||| ||| ||||||| | || | || | || Sbjct 3969 AGCGCAC-GGTAACGCGTCGCAGACGAACTCTCTCTCGATCTCCACCGAGTCGGAAACGA 4027 Query 93039 TTTCTATTACTCTACTATTTGGTGGTTTT--TGTACGACATAATTGTACATTAAGCACGC 93096 |||| | |||| || | | || ||| | || || ||| | ||||| || Sbjct 4028 TTTCCTTAACTCG-CTCCTCACTCACCTTCGTGTTCAGCA-AACCGTAGAGCAAGCAGGC 4085 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156 || ||| ||||| |||||||||||||| |||||||| ||| ||| || || || || Sbjct 4086 GAAATCGCAGTGTAATCCTTCGTCTCGTGAAATCAACTCGTTGGAGAAGGTCAATCCAGG 4145 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATAC 93215 | || || |||||||| | ||| || || | ||| || || || || || ||||| | Sbjct 4146 CATCAAACCGCGTTTCTTCAACCAGAAGATAG-CGCAGAAGCTTCCCGAGAAGAATATCC 4204 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275 |||| ||| || || || | |||||||| ||||| | || | ||||| Sbjct 4205 CTTCGACGCAAGCGAAGGCAATGATACGTTCCGCAAACGACTCCGA---GCCATCGATCC 4261 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 | | | ||||||| ||| || |||| | ||||| | || || | |||| ||| | Sbjct 4262 ACCTCATCGCCCAATTGGCCTTCTTCTGGACGCAAGGAATGGTCTCCACAGCGCGAAACA 4321 Query 93336 G-GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCA 93394 | | |||| | |||| || || ||||| || |||| | || ||||| || Sbjct 4322 GCCTCATCTTG-TCGTTGGAGTCCTTGATGTAGGTCTCGAGGAGCAAGCTGTACATCTCG 4380 Query 93395 GAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGC 93454 || || | ||||| ||||| || ||||||||||||||| | ||| || | || || Sbjct 4381 GAGTGAATGTTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGAGCCTCGGCGACTTGA 4440 Query 93455 ACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaa 93514 || |||| || || | | || ||||| || || || ||||| || || || Sbjct 4441 ACCTCTTTCATGAACCTTCCGGCTAGGTTTTCCAATACGATTCCGTCGGAGGCGGCGAAG 4500 Query 93515 aaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGAT 93574 || || | | || | || || ||| || | || | || ||||| | | | Sbjct 4501 AAGGCGAGGACGTGAGTGATGAAGTGTCGTTCGCCGTCGGTGAGGGAGTCCCAGTGGCGT 4560 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634 | || | ||| | |||||| || ||| | ||||| || || ||||| || || |||||| Sbjct 4561 TGGTCCTGTGACAAATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCGGCCTTCTTGTAC 4620 Query 93635 ATATCCCATAT 93645 || ||||| || Sbjct 4621 ATTTCCCAAAT 4631 >seq266830 Length=2599 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||||| | | || Sbjct 1539 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTAAGAGA 1598 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 1599 GCGTGGGTTCAAATCCCACTTCTGACA 1625 >seq274877 Length=1954 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 8/105 (8%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 711 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGGG 654 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 ||||||||| || ||||| ||||| ||| | ||| ||||||| Sbjct 653 CGTGGGTTCAAATCCCACTTCTGAC--ATTCTCATTTTAATTTTT 611 >seq239267 Length=1505 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 906 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGGG 849 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||| || ||||| |||||||| Sbjct 848 CGTGGGTTCAAATCCCACTTCTGACAAA 821 >seq153427 Length=5022 Score = 84.2 bits (92), Expect = 2e-11 Identities = 86/109 (79%), Gaps = 4/109 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 4736 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 4795 Query 126323 GTGGGTTCGAACCCCACACCTGACA-AATTATTATTGGA-ATTTTTGTT 126369 |||||||| || ||||| |||||| |||| || || | |||||| || Sbjct 4796 GTGGGTTCAAATCCCACTTCTGACATAATTTTTTTTATATATTTTTTTT 4844 >seq61581 Length=2344 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1449 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1506 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||| || |||||| ||| || ||| || || Sbjct 1507 GGGTTCAAATCCCACAGCTGTCATATTGTTTTT 1539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553631661671440