Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq294625 159 4e-34
seq266830 91.5 2e-13
seq274877 84.2 2e-11
seq239267 84.2 2e-11
seq153427 84.2 2e-11
seq61581 84.2 2e-11
>seq294625
Length=4757
Score = 159 bits (176), Expect = 4e-34
Identities = 554/851 (65%), Gaps = 15/851 (2%)
Strand=Plus/Plus
Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861
||| || || || |||||| |||| || |||||||| ||||| |||| || || |||
Sbjct 3789 TTTCTGATACTCTCCAACTCTTTTCTCGAAGAAATTCGTCTTCCCTTGTAACGAAATCAG 3848
Query 92862 ATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAA 92919
| || | | || |||||||| ||||| || | || ||| ||| |||
Sbjct 3849 CTCCATCCAATCGAATGGATTCTGTGCGTTGTACAATTTCCCACATCCCAATGACACCAA 3908
Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979
| || ||||| || || || ||||||| | ||| | |||| |||||| || | ||
Sbjct 3909 AAGCCTGTCAGCAACGAACTCGATGTACTTACTCATGAGGTCACCATTCATCCCCACGAG 3968
Query 92980 A-CGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGA 93038
| || || |||| |||||| | ||| ||| ||||||| | || | || | ||
Sbjct 3969 AGCGCAC-GGTAACGCGTCGCAGACGAACTCTCTCTCGATCTCCACCGAGTCGGAAACGA 4027
Query 93039 TTTCTATTACTCTACTATTTGGTGGTTTT--TGTACGACATAATTGTACATTAAGCACGC 93096
|||| | |||| || | | || ||| | || || ||| | ||||| ||
Sbjct 4028 TTTCCTTAACTCG-CTCCTCACTCACCTTCGTGTTCAGCA-AACCGTAGAGCAAGCAGGC 4085
Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156
|| ||| ||||| |||||||||||||| |||||||| ||| ||| || || || ||
Sbjct 4086 GAAATCGCAGTGTAATCCTTCGTCTCGTGAAATCAACTCGTTGGAGAAGGTCAATCCAGG 4145
Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATAC 93215
| || || |||||||| | ||| || || | ||| || || || || || ||||| |
Sbjct 4146 CATCAAACCGCGTTTCTTCAACCAGAAGATAG-CGCAGAAGCTTCCCGAGAAGAATATCC 4204
Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275
|||| ||| || || || | |||||||| ||||| | || | |||||
Sbjct 4205 CTTCGACGCAAGCGAAGGCAATGATACGTTCCGCAAACGACTCCGA---GCCATCGATCC 4261
Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335
| | | ||||||| ||| || |||| | ||||| | || || | |||| ||| |
Sbjct 4262 ACCTCATCGCCCAATTGGCCTTCTTCTGGACGCAAGGAATGGTCTCCACAGCGCGAAACA 4321
Query 93336 G-GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCA 93394
| | |||| | |||| || || ||||| || |||| | || ||||| ||
Sbjct 4322 GCCTCATCTTG-TCGTTGGAGTCCTTGATGTAGGTCTCGAGGAGCAAGCTGTACATCTCG 4380
Query 93395 GAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGC 93454
|| || | ||||| ||||| || ||||||||||||||| | ||| || | || ||
Sbjct 4381 GAGTGAATGTTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGAGCCTCGGCGACTTGA 4440
Query 93455 ACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaa 93514
|| |||| || || | | || ||||| || || || ||||| || || ||
Sbjct 4441 ACCTCTTTCATGAACCTTCCGGCTAGGTTTTCCAATACGATTCCGTCGGAGGCGGCGAAG 4500
Query 93515 aaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGAT 93574
|| || | | || | || || ||| || | || | || ||||| | | |
Sbjct 4501 AAGGCGAGGACGTGAGTGATGAAGTGTCGTTCGCCGTCGGTGAGGGAGTCCCAGTGGCGT 4560
Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634
| || | ||| | |||||| || ||| | ||||| || || ||||| || || ||||||
Sbjct 4561 TGGTCCTGTGACAAATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCGGCCTTCTTGTAC 4620
Query 93635 ATATCCCATAT 93645
|| ||||| ||
Sbjct 4621 ATTTCCCAAAT 4631
>seq266830
Length=2599
Score = 91.5 bits (100), Expect = 2e-13
Identities = 73/87 (84%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320
||||||||| ||||||||||||||||||||||||| | ||| |||||||| | | ||
Sbjct 1539 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTAAGAGA 1598
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || ||||| ||||||
Sbjct 1599 GCGTGGGTTCAAATCCCACTTCTGACA 1625
>seq274877
Length=1954
Score = 84.2 bits (92), Expect = 2e-11
Identities = 83/105 (79%), Gaps = 8/105 (8%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || |
Sbjct 711 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGGG 654
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366
||||||||| || ||||| ||||| ||| | ||| |||||||
Sbjct 653 CGTGGGTTCAAATCCCACTTCTGAC--ATTCTCATTTTAATTTTT 611
>seq239267
Length=1505
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/88 (82%), Gaps = 6/88 (7%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || |
Sbjct 906 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGGG 849
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA 126349
||||||||| || ||||| ||||||||
Sbjct 848 CGTGGGTTCAAATCCCACTTCTGACAAA 821
>seq153427
Length=5022
Score = 84.2 bits (92), Expect = 2e-11
Identities = 86/109 (79%), Gaps = 4/109 (4%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||
Sbjct 4736 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 4795
Query 126323 GTGGGTTCGAACCCCACACCTGACA-AATTATTATTGGA-ATTTTTGTT 126369
|||||||| || ||||| |||||| |||| || || | |||||| ||
Sbjct 4796 GTGGGTTCAAATCCCACTTCTGACATAATTTTTTTTATATATTTTTTTT 4844
>seq61581
Length=2344
Score = 84.2 bits (92), Expect = 2e-11
Identities = 75/93 (81%), Gaps = 2/93 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 1449 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1506
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||| || |||||| ||| || ||| || ||
Sbjct 1507 GGGTTCAAATCCCACAGCTGTCATATTGTTTTT 1539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 553631661671440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |