Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq284040 100 2e-16
seq228143 95.1 1e-14
seq156932 95.1 1e-14
seq25275 91.5 1e-13
>seq284040
Length=2693
Score = 100 bits (110), Expect = 2e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229
|| ||| | ||| | ||| || || || || |||||||||||| || ||| | ||
Sbjct 971 CAGAACCAGATGCAACGTGGACTCCTTCTGGATGTTGTAATCGGCCAAAGTCCTTCCGTC 912
Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289
||| || || || || ||| |||| | |||||| |||||||| || || ||||| |||||
Sbjct 911 TTCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTC 852
Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349
|||||| || | | || | ||||||| | ||| || |||| || | |||
Sbjct 851 CTGAATCTTCGCCTTCACGTTATCGATCGTGTCGGAGCTTTCCACCTCCAACGTGATCGT 792
Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
||| ||||||| || || || || ||||||||
Sbjct 791 TTTTCCGGTCAACGTCTTCACGAAGATCTGCAT 759
Score = 82.4 bits (90), Expect = 6e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287
|| || || || || || ||| ||||||||||||| || ||||||||||| ||||| |||
Sbjct 685 TCCTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATTCCTTCCTTG 626
Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347
|| ||||| || | | || | || |||| | ||||| |||| || |
Sbjct 625 TCCTGGATCTTCGCCTTGACGTTATCGATCGTATCGGAGCTCTCGACCTCCAGAGTGATG 566
Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||||||| || ||||| || || ||||||||
Sbjct 565 GTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 531
>seq228143
Length=6931
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || || || | || || || || || |||||||| |||
Sbjct 2870 ATACCACCACGAAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 2811
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || ||||| || || || || ||| | || || | ||| ||||| |||
Sbjct 2810 GCAAGGGTTCGGCCGTCTTCCAGCTGCTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGA 2751
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| |||||||||||||| ||||| || | | |||| |||||||| | |||
Sbjct 2750 GGGATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCA 2691
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | || || ||||||| ||||| ||||||||||||||
Sbjct 2690 ACTTCTAATGTGATGGTCTTTCCGGTCAAGGTTTTCACAAAAATCTGCAT 2641
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| |||||||| | | || ||||| | || ||||| || || |||||||| |||
Sbjct 2414 ATACCACCACGTAGACGGAGGACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCG 2355
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| |||||| |||||| || || || || || ||||||| | || ||||| ||
Sbjct 2354 GCTAAAGTACGGCCATCTTCGAGCTGCTTTCCGGCAAAGATGAGCCTTTGCTGGTCTGGG 2295
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||||||||| ||||| ||||| || | | || | ||||||| ||
Sbjct 2294 GGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATTGTGTCGGAACTCTCA 2235
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | || || || || || || || ||||| ||||||||
Sbjct 2234 ACCTCGAGAGTGATTGTCTTTCCAGTGAGGGTCTTAACAAAGATCTGCAT 2185
>seq156932
Length=6713
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 114168 CTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAA 114227
|||| || | ||| | || ||||| || || ||||||||||| | ||| || |
Sbjct 3769 CTCAGCACAAGATGCAGGGTCGATTCCTTCTGGATGTTGTAATCCGCAAGAGTCCGCCCA 3828
Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287
||||| || ||||| || || ||||||| | |||||||| || || || ||||| |||
Sbjct 3829 TCTTCCAGCTGTTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGGATTCCTTCCTTG 3888
Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347
|| |||||| ||| | | || | ||| || | | ||||| |||| || | |
Sbjct 3889 TCTTGAATCTTGGCTTTCACGTTGTCGATGGTATCCGAGCTCTCGACTTCCAAAGTGATC 3948
Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || || || || ||||| || |||||||||||
Sbjct 3949 GTCTTCCCAGTGAGGGTTTTGACGAAAATCTGCAT 3983
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || || || | || || || || || |||||||| ||
Sbjct 3982 ATACCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCC 4041
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| |||||| || || ||||||||||| ||| |||| | ||||| ||||| ||
Sbjct 4042 GCAAGAGTACGGCCGTCCTCGAGTTGTTTACCGGCGAAGATCAATCGCTGCTGGTCTGGG 4101
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| |||||||| ||||| ||||| || | | || | |||||| | | |||
Sbjct 4102 GGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTTTCT 4161
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| || | || | ||||||||||||| || || || || || ||||||
Sbjct 4162 ACTTCAAGAGTGATGGTTTTGCCGGTCAAGGTCTTGACGAAGATTTGCATG 4212
>seq25275
Length=8276
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|||||||| | || | | ||| || || | || || || || || ||||| || |||
Sbjct 5020 ATACCGCCTCTTAAACGAAGAACCAAGTGAAGGGTTGACTCCTTCTGGATGTTATAGTCG 4961
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| |||||| || || || || || || || |||| || | ||| ||||| ||
Sbjct 4960 GCAAGAGTACGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGG 4901
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||| ||||| ||| || || | | |||| |||||| | | ||||
Sbjct 4900 GGAATACCTTCCTTGTCTTGAATTTTAGCCTTCACGTTGTCAATGGTGTCAGAGCTTTCG 4841
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | ||||||||||| || ||||| ||||| || |||||
Sbjct 4840 ACCTCCAGCGTGATGGTTTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 4791
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 417759021284472
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |