Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq293582 260 3e-64 seq294625 181 2e-40 >seq293582 Length=2029 Score = 260 bits (288), Expect = 3e-64 Identities = 502/731 (69%), Gaps = 22/731 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||| |||||||| |||||||| ||| ||||| || ||| | |||||| Sbjct 1724 CTCGCCTTCTTTGCCGCCTCGGACGGCATCGTCCTGGAGAATCTTGCCGGACGCTTCATG 1665 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || ||||| ||| | ||||||||| ||||||||| |||||||| ||||| |||||| Sbjct 1664 AAGGAGGTCCAGGTCGCGGAGGCGCGCGCCTTCTACGGGTTCCAGATCGCCATCGAGAAC 1605 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | || || | | |||||| ||| || |||| Sbjct 1604 ATCCACTCGGAGATGTACAGCCTCCTCCTGGAGTCCTACATCAAGGACTCCAACGAGAAG 1545 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 ||| |||||||| | ||| ||||||| || ||||||||| || |||||| | ||||| Sbjct 1544 AACCGGCTGTTCCACGCCGTGGAGACCATCCCCTGCATCCAGCGGAAGGCCCAGTGGGCC 1485 Query 42663 CTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 ||| ||||||||| | |||| | |||| ||| || | || ||||| || Sbjct 1484 CTCCGCTGGATCGACGGGTCCGAGTCC---TTCGCGGAGCGGATCGTCGCCTTCGCCTGT 1428 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782 |||||||||||||||||||| || |||| | ||||||||||||||||| || | Sbjct 1427 GTCGAGGGCATCTTCTTCTCCGGAAGCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGC 1368 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 |||||| || || || ||||| |||||| | ||| |||||||| || ||||| | Sbjct 1367 CTGATGCCGGGCCTAACGTTCTCCAACGAATTGATCTCGAGGGACGAAGGCCTGCACTGC 1308 Query 42843 GACTTTGCCTGC-----CTCCTG-TTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAG 42896 || || || ||| || | | || | || || | | || ||| ||||| Sbjct 1307 GATTTCGCGTGCTTGATCTACGGTTTGTTGA---ACATGAAGC-TGAGC-----GAGGAG 1257 Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCG 42956 ||||| | || | |||| || ||||||||||||| |||||| | | || Sbjct 1256 CGGGTTAAGAAGATTGTGGCGGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCG 1197 Query 42957 CTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGT 43015 ||| |||||| ||||| || |||||| ||| || ||| ||| ||| ||| ||| ||| Sbjct 1196 CTG-CCGTGTGGTCTGGTGGGGATGAACGGCGATCTGATGAGCACGTATATCGAGTTCGT 1138 Query 43016 CGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCT 43074 || || | | | ||| | | |||| | | | ||||| || | || | Sbjct 1137 GGCGGATCGGTTGTTGGTGGC-GTTGGGGTACGGGAAGATGTACAAGGTGCAGAATCCGT 1079 Query 43075 TCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCG 43134 | || | |||||| || |||||| |||| ||||| ||||| ||||||||| | || | Sbjct 1078 TTGATTGGATGGAGCTGATTTCGTTGCAGGGGAAGACGAACTTCTTCGAGAAGAGGGTTG 1019 Query 43135 CCGACTACCAG 43145 || |||||| Sbjct 1018 GGGAGTACCAG 1008 >seq294625 Length=4757 Score = 181 bits (200), Expect = 2e-40 Identities = 484/723 (67%), Gaps = 24/723 (3%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| | |||| |||||||||||||||| | || || | ||||| Sbjct 4622 ATGTACAAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAGGAGGTCGATTTGTCACAGGAC 4563 Query 42369 -ACGGCCGGCTGGGAGTCACTGTCTGA----GAACGAAAAGTTTTTCCTCAAAAACATAC 42423 | ||| |||||| || || | || |||||| | ||| ||| || | | Sbjct 4562 CAACGCCA-CTGGGACTCCCTCACCGACGGCGAACGACAC----TTCATCACTCACGTCC 4508 Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 | ||||||||||||||||| ||||| || || || ||||| ||| |||||||||| Sbjct 4507 TCGCCTTCTTCGCCGCCTCCGACGGAATCGTATTGGAAAACCTAGCCGGAAGGTTCATGA 4448 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 ||||||| || | ||||| || ||| |||||||| |||||||| || || |||||| Sbjct 4447 AAGAGGTTCAAGTCGCCGAGGCTCG-TGCTTTCTACGGATTCCAGATCGCAATCGAGAAC 4389 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | || ||| | || |||||| ||| || ||| Sbjct 4388 ATTCACTCCGAGATGTACAGCTTGCTCCTCGAGACCTACATCAAGGACTCCAACGACAAG 4329 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | ||||||| || ||||||| || || ||| || |||||||||| | |||||| Sbjct 4328 ATGAGGCTGTTTCGCGCTGTGGAGACCATTCCTTGCGTCCAGAAGAAGGCCAATTGGGCG 4269 Query 42663 CTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 | | |||||||| | | || | |||| | || | | | ||||| | | Sbjct 4268 ATGAGGTGGATCGA-TGGCTCG--GAGTCGTTTGCGGAACGTATCATTGCCTTCGCTTGC 4212 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782 ||||| || || ||||||||||| |||| | | ||||||||| | ||| | | Sbjct 4211 GTCGAAGGGATATTCTTCTCGGGAAGCTTCTGCGCTATCTTCTGGTTGAAGAAACGCGGT 4152 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 | |||||| ||| | |||||||| ||||| | || | ||||| || | || | Sbjct 4151 TTGATGCCTGGATTGACCTTCTCCAACGAGTTGATTTCACGAGACGAAGGATTACACTGC 4092 Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC-AAGCCCTCGAAGGAGCGGGT 42901 || || ||||| | || ||| | || | ||| ||| ||||||| || Sbjct 4091 GATTTCGCCTG---CTTGCTCTACGGTTTGCTGA-ACACGAAGGTGAGTGAGGAGCGAGT 4036 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGC-TGC 42960 || ||| | | || | ||||||||||||| |||||| || || | ||| | Sbjct 4035 TAAGGAAATCGTTTCCGACTCGGTGGAGATCGAGAGAGAGTTCGTC-TGC-GACGCGTTA 3978 Query 42961 CCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCC 43019 ||||| | || || || ||||| ||||||||| | ||||||||| ||| ||| || Sbjct 3977 CCGTGCGCTCTCGTGGGGATGAATGGTGACCTCATGAGTAAGTACATCGAGTTCGTTGCT 3918 Query 43020 GAC 43022 ||| Sbjct 3917 GAC 3915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 938863142238560