Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq293582 260 3e-64
seq294625 181 2e-40
>seq293582
Length=2029
Score = 260 bits (288), Expect = 3e-64
Identities = 502/731 (69%), Gaps = 22/731 (3%)
Strand=Plus/Minus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| |||||||| |||||||| |||||||| ||| ||||| || ||| | ||||||
Sbjct 1724 CTCGCCTTCTTTGCCGCCTCGGACGGCATCGTCCTGGAGAATCTTGCCGGACGCTTCATG 1665
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542
|| ||||| ||| | ||||||||| ||||||||| |||||||| ||||| ||||||
Sbjct 1664 AAGGAGGTCCAGGTCGCGGAGGCGCGCGCCTTCTACGGGTTCCAGATCGCCATCGAGAAC 1605
Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602
| ||||| ||| ||||| | || || | | |||||| ||| || ||||
Sbjct 1604 ATCCACTCGGAGATGTACAGCCTCCTCCTGGAGTCCTACATCAAGGACTCCAACGAGAAG 1545
Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662
||| |||||||| | ||| ||||||| || ||||||||| || |||||| | |||||
Sbjct 1544 AACCGGCTGTTCCACGCCGTGGAGACCATCCCCTGCATCCAGCGGAAGGCCCAGTGGGCC 1485
Query 42663 CTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722
||| ||||||||| | |||| | |||| ||| || | || ||||| ||
Sbjct 1484 CTCCGCTGGATCGACGGGTCCGAGTCC---TTCGCGGAGCGGATCGTCGCCTTCGCCTGT 1428
Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782
|||||||||||||||||||| || |||| | ||||||||||||||||| || |
Sbjct 1427 GTCGAGGGCATCTTCTTCTCCGGAAGCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGC 1368
Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842
|||||| || || || ||||| |||||| | ||| |||||||| || ||||| |
Sbjct 1367 CTGATGCCGGGCCTAACGTTCTCCAACGAATTGATCTCGAGGGACGAAGGCCTGCACTGC 1308
Query 42843 GACTTTGCCTGC-----CTCCTG-TTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAG 42896
|| || || ||| || | | || | || || | | || ||| |||||
Sbjct 1307 GATTTCGCGTGCTTGATCTACGGTTTGTTGA---ACATGAAGC-TGAGC-----GAGGAG 1257
Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCG 42956
||||| | || | |||| || ||||||||||||| |||||| | | ||
Sbjct 1256 CGGGTTAAGAAGATTGTGGCGGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCG 1197
Query 42957 CTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGT 43015
||| |||||| ||||| || |||||| ||| || ||| ||| ||| ||| ||| |||
Sbjct 1196 CTG-CCGTGTGGTCTGGTGGGGATGAACGGCGATCTGATGAGCACGTATATCGAGTTCGT 1138
Query 43016 CGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCT 43074
|| || | | | ||| | | |||| | | | ||||| || | || |
Sbjct 1137 GGCGGATCGGTTGTTGGTGGC-GTTGGGGTACGGGAAGATGTACAAGGTGCAGAATCCGT 1079
Query 43075 TCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCG 43134
| || | |||||| || |||||| |||| ||||| ||||| ||||||||| | || |
Sbjct 1078 TTGATTGGATGGAGCTGATTTCGTTGCAGGGGAAGACGAACTTCTTCGAGAAGAGGGTTG 1019
Query 43135 CCGACTACCAG 43145
|| ||||||
Sbjct 1018 GGGAGTACCAG 1008
>seq294625
Length=4757
Score = 181 bits (200), Expect = 2e-40
Identities = 484/723 (67%), Gaps = 24/723 (3%)
Strand=Plus/Minus
Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368
|||||||||||||| | |||| |||||||||||||||| | || || | |||||
Sbjct 4622 ATGTACAAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAGGAGGTCGATTTGTCACAGGAC 4563
Query 42369 -ACGGCCGGCTGGGAGTCACTGTCTGA----GAACGAAAAGTTTTTCCTCAAAAACATAC 42423
| ||| |||||| || || | || |||||| | ||| ||| || | |
Sbjct 4562 CAACGCCA-CTGGGACTCCCTCACCGACGGCGAACGACAC----TTCATCACTCACGTCC 4508
Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483
| ||||||||||||||||| ||||| || || || ||||| ||| ||||||||||
Sbjct 4507 TCGCCTTCTTCGCCGCCTCCGACGGAATCGTATTGGAAAACCTAGCCGGAAGGTTCATGA 4448
Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAAC 42542
||||||| || | ||||| || ||| |||||||| |||||||| || || ||||||
Sbjct 4447 AAGAGGTTCAAGTCGCCGAGGCTCG-TGCTTTCTACGGATTCCAGATCGCAATCGAGAAC 4389
Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602
| ||||| ||| ||||| | || ||| | || |||||| ||| || |||
Sbjct 4388 ATTCACTCCGAGATGTACAGCTTGCTCCTCGAGACCTACATCAAGGACTCCAACGACAAG 4329
Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662
| ||||||| || ||||||| || || ||| || |||||||||| | ||||||
Sbjct 4328 ATGAGGCTGTTTCGCGCTGTGGAGACCATTCCTTGCGTCCAGAAGAAGGCCAATTGGGCG 4269
Query 42663 CTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722
| | |||||||| | | || | |||| | || | | | ||||| | |
Sbjct 4268 ATGAGGTGGATCGA-TGGCTCG--GAGTCGTTTGCGGAACGTATCATTGCCTTCGCTTGC 4212
Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782
||||| || || ||||||||||| |||| | | ||||||||| | ||| | |
Sbjct 4211 GTCGAAGGGATATTCTTCTCGGGAAGCTTCTGCGCTATCTTCTGGTTGAAGAAACGCGGT 4152
Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842
| |||||| ||| | |||||||| ||||| | || | ||||| || | || |
Sbjct 4151 TTGATGCCTGGATTGACCTTCTCCAACGAGTTGATTTCACGAGACGAAGGATTACACTGC 4092
Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC-AAGCCCTCGAAGGAGCGGGT 42901
|| || ||||| | || ||| | || | ||| ||| ||||||| ||
Sbjct 4091 GATTTCGCCTG---CTTGCTCTACGGTTTGCTGA-ACACGAAGGTGAGTGAGGAGCGAGT 4036
Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGC-TGC 42960
|| ||| | | || | ||||||||||||| |||||| || || | ||| |
Sbjct 4035 TAAGGAAATCGTTTCCGACTCGGTGGAGATCGAGAGAGAGTTCGTC-TGC-GACGCGTTA 3978
Query 42961 CCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCC 43019
||||| | || || || ||||| ||||||||| | ||||||||| ||| ||| ||
Sbjct 3977 CCGTGCGCTCTCGTGGGGATGAATGGTGACCTCATGAGTAAGTACATCGAGTTCGTTGCT 3918
Query 43020 GAC 43022
|||
Sbjct 3917 GAC 3915
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 938863142238560
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